Wall clock time and date at job start Mon Mar 8 2021 13:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35911 * 117.00088 * 179.97438 * 10 9 8 12 12 C 1.38702 * 120.04812 * 359.73329 * 11 10 9 13 13 C 1.38164 * 119.95597 * 179.69997 * 12 11 10 14 14 C 1.38323 * 120.04110 * 0.56357 * 13 12 11 15 15 Br 1.89100 * 119.95215 * 179.74840 * 14 13 12 16 16 C 1.38368 * 120.09536 * 359.73385 * 14 13 12 17 17 C 1.38118 * 120.04249 * 359.96854 * 16 14 13 18 18 C 1.50701 * 120.02176 * 180.02562 * 17 16 14 19 19 O 1.42893 * 109.47203 * 105.02686 * 18 17 16 20 20 Si 1.86299 * 109.47147 * 345.02084 * 18 17 16 21 21 H 1.48500 * 109.47014 * 60.00281 * 20 18 17 22 22 H 1.48494 * 109.47126 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47236 * 300.00387 * 20 18 17 24 24 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 8 7 26 26 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 27 27 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 28 28 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 31 31 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 32 32 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 33 33 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 34 34 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 35 35 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 36 36 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 38 38 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 39 39 H 1.08006 * 120.02061 * 359.96499 * 12 11 10 40 40 H 1.07995 * 119.97769 * 180.29706 * 13 12 11 41 41 H 1.07998 * 119.97932 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.46969 * 225.02170 * 18 17 16 43 43 H 0.96696 * 114.00665 * 59.99630 * 19 18 17 44 44 H 1.07999 * 119.99927 * 180.24100 * 24 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9374 -3.5033 6.0756 12 6 5.1776 -4.0805 7.0823 13 6 5.8012 -4.7015 8.1474 14 6 7.1822 -4.7378 8.2160 15 35 8.0330 -5.5823 9.6785 16 6 7.9421 -4.1573 7.2159 17 6 7.3226 -3.5408 6.1464 18 6 8.1506 -2.9092 5.0571 19 8 8.1234 -3.7406 3.8953 20 14 9.9085 -2.7196 5.6442 21 1 10.4656 -4.0551 5.9781 22 1 10.7246 -2.0979 4.5707 23 1 9.9367 -1.8556 6.8515 24 6 3.1758 -0.8216 3.8171 25 6 2.7155 -0.1698 2.6883 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1206 2.2703 0.8901 32 1 2.1206 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5214 35 1 2.5356 -2.7987 0.5825 36 1 3.3559 -3.9596 2.5930 37 1 3.5293 -2.3833 5.9053 38 1 3.5332 -3.9242 5.0141 39 1 4.0992 -4.0481 7.0315 40 1 5.2099 -5.1552 8.9290 41 1 9.0202 -4.1863 7.2716 42 1 7.7417 -1.9290 4.8120 43 1 7.2378 -3.8831 3.5342 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26869_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:52:17 Heat of formation + Delta-G solvation = -55.354510 kcal Electronic energy + Delta-G solvation = -25347.867621 eV Core-core repulsion = 21693.298982 eV Total energy + Delta-G solvation = -3654.568639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68317 -40.09059 -38.65433 -37.61991 -33.54980 -32.79326 -32.54794 -31.86322 -29.81930 -29.41133 -28.29475 -28.27151 -27.39317 -26.85817 -23.74327 -23.47232 -22.57845 -21.89225 -19.50588 -18.38859 -18.03000 -17.20590 -17.11496 -16.73849 -16.24003 -15.82381 -15.70821 -15.61108 -15.28446 -14.70227 -14.53539 -14.31708 -14.08587 -14.04398 -13.97986 -13.84710 -13.72530 -13.48738 -13.15031 -13.11825 -13.03648 -12.96857 -12.95011 -12.58958 -12.45955 -12.29603 -11.93833 -11.89198 -11.47704 -11.38428 -11.25033 -11.08668 -10.92068 -10.76494 -10.75863 -10.21828 -9.78744 -9.68219 -9.29356 -0.04427 -0.02567 0.15804 0.54084 0.56676 1.11857 1.42671 1.45134 1.84137 1.88455 1.93949 2.02235 2.23159 2.33460 2.66971 3.01540 3.38463 3.52977 3.74322 3.81611 3.85066 3.91550 4.02491 4.12105 4.19426 4.25585 4.32124 4.38599 4.55039 4.58672 4.73100 4.84495 4.84632 4.87025 4.88465 4.89248 4.89614 4.90482 4.98319 5.02099 5.02745 5.17722 5.35276 5.41873 5.57884 5.59279 5.61335 5.67823 5.71110 6.12744 6.15478 6.57005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.126 2.874 3 C -0.464 4.464 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.105 4.105 7 C -0.118 4.118 8 C -0.102 4.102 9 C 0.097 3.903 10 O -0.311 6.311 11 C 0.157 3.843 12 C -0.197 4.197 13 C -0.045 4.045 14 C -0.135 4.135 15 Br -0.050 7.050 16 C -0.068 4.068 17 C -0.151 4.151 18 C -0.080 4.080 19 O -0.549 6.549 20 Si 1.019 2.981 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.238 1.238 24 C -0.120 4.120 25 C -0.105 4.105 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.139 0.861 42 H 0.086 0.914 43 H 0.376 0.624 44 H 0.128 0.872 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 1.944 -1.351 5.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.313 2.687 3 C -0.571 4.571 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.123 4.123 7 C -0.136 4.136 8 C -0.102 4.102 9 C 0.023 3.977 10 O -0.225 6.225 11 C 0.110 3.890 12 C -0.216 4.216 13 C -0.064 4.064 14 C -0.214 4.214 15 Br 0.035 6.965 16 C -0.088 4.088 17 C -0.153 4.153 18 C -0.189 4.189 19 O -0.355 6.355 20 Si 0.840 3.160 21 H -0.184 1.184 22 H -0.190 1.190 23 H -0.161 1.161 24 C -0.139 4.139 25 C -0.123 4.123 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.182 0.818 40 H 0.174 0.826 41 H 0.156 0.844 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.146 0.854 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.248 1.776 -0.520 3.738 hybrid contribution -1.341 -0.143 -0.195 1.363 sum -4.589 1.632 -0.715 4.923 Atomic orbital electron populations 1.26281 1.21532 1.04493 1.04565 0.77169 0.65205 0.64541 0.61762 1.26298 1.06359 1.19560 1.04836 1.26295 1.06365 1.08529 1.15845 1.27969 1.02426 0.99687 1.11029 1.21387 0.97392 0.95129 0.98345 1.21384 0.98936 1.00572 0.92741 1.19572 1.01541 0.94322 0.94761 1.21859 0.77237 1.01577 0.97021 1.86139 1.22503 1.72369 1.41487 1.18926 0.91235 0.91508 0.87340 1.21552 1.01730 1.03264 0.95056 1.21217 0.91986 0.95341 0.97874 1.21728 0.95684 1.07277 0.96754 1.96758 1.80036 1.78921 1.40783 1.21003 1.00430 0.95160 0.92189 1.19665 0.91853 1.05064 0.98721 1.25180 1.12175 0.95596 0.85923 1.86660 1.34701 1.71218 1.42955 0.84407 0.72049 0.80268 0.79273 1.18422 1.19044 1.16102 1.21382 0.99060 0.93872 0.99538 1.21377 0.97458 1.00702 0.92758 0.91358 0.90754 0.91335 0.91412 0.90742 0.90905 0.90876 0.90753 0.91402 0.84467 0.85151 0.89506 0.89327 0.81811 0.82611 0.84352 0.89627 0.77463 0.85412 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.06 8.65 113.37 0.98 3.04 16 2 Si 1.13 -7.29 12.32 68.60 0.85 -6.44 16 3 C -0.46 2.17 8.53 113.37 0.97 3.13 16 4 C -0.46 2.18 8.53 113.37 0.97 3.14 16 5 C -0.37 0.77 4.59 22.27 0.10 0.87 16 6 C -0.10 0.13 9.29 22.27 0.21 0.34 16 7 C -0.12 0.07 9.70 22.27 0.22 0.28 16 8 C -0.10 0.04 5.51 -19.87 -0.11 -0.07 16 9 C 0.10 -0.32 4.86 71.23 0.35 0.03 16 10 O -0.31 -0.18 9.02 -92.54 -0.84 -1.02 16 11 C 0.16 0.22 6.62 22.50 0.15 0.37 16 12 C -0.20 0.31 9.04 22.36 0.20 0.51 16 13 C -0.04 0.01 9.78 22.27 0.22 0.22 16 14 C -0.13 -0.45 6.22 22.32 0.14 -0.31 16 15 Br -0.05 -0.18 33.70 -20.37 -0.69 -0.87 16 16 C -0.07 -0.30 8.40 22.27 0.19 -0.11 16 17 C -0.15 -0.55 5.28 -19.77 -0.10 -0.66 16 18 C -0.08 -0.27 2.33 71.24 0.17 -0.11 16 19 O -0.55 -2.88 12.65 -148.98 -1.89 -4.76 16 20 Si 1.02 3.41 25.75 68.60 1.77 5.17 16 21 H -0.26 -1.27 6.73 99.48 0.67 -0.60 16 22 H -0.27 -1.43 7.11 99.48 0.71 -0.73 16 23 H -0.24 -0.45 7.11 99.48 0.71 0.25 16 24 C -0.12 0.02 9.70 22.27 0.22 0.23 16 25 C -0.11 0.11 9.29 22.27 0.21 0.32 16 26 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H 0.07 -0.36 7.96 -2.39 -0.02 -0.37 16 28 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.07 -0.38 7.69 -2.38 -0.02 -0.39 16 32 H 0.07 -0.38 7.69 -2.39 -0.02 -0.40 16 33 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 34 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.14 -0.69 7.43 -2.91 -0.02 -0.71 16 36 H 0.13 -0.44 8.06 -2.91 -0.02 -0.46 16 37 H 0.09 -0.52 7.59 -2.39 -0.02 -0.53 16 38 H 0.09 -0.55 7.62 -2.39 -0.02 -0.57 16 39 H 0.16 -1.14 6.30 -2.91 -0.02 -1.16 16 40 H 0.16 -0.63 8.06 -2.91 -0.02 -0.65 16 41 H 0.14 0.52 4.89 -2.91 -0.01 0.50 16 42 H 0.09 0.15 7.83 -2.39 -0.02 0.13 16 43 H 0.38 0.43 8.60 -74.06 -0.64 -0.21 16 44 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 45 H 0.14 -0.65 7.43 -2.91 -0.02 -0.67 16 Total: 0.00 -10.80 393.69 5.34 -5.47 By element: Atomic # 1 Polarization: -9.87 SS G_CDS: 1.08 Total: -8.79 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 5.06 Total: 11.24 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -2.72 Total: -5.78 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.61 Total: -1.27 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.69 Total: -0.87 kcal Total: -10.80 5.34 -5.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26869_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.889 kcal (2) G-P(sol) polarization free energy of solvation -10.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds