Wall clock time and date at job start Mon Mar 8 2021 15:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.02287 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.05390 * 179.97438 * 5 4 3 7 7 C 1.38155 * 120.11004 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.97362 * 179.97438 * 7 6 5 9 9 O 1.42907 * 109.47480 * 104.99437 * 8 7 6 10 10 Si 1.86303 * 109.47202 * 344.99399 * 8 7 6 11 11 H 1.48504 * 109.47048 * 60.00341 * 10 8 7 12 12 H 1.48502 * 109.47467 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47147 * 300.00523 * 10 8 7 14 14 C 1.38790 * 120.05167 * 359.97313 * 7 6 5 15 15 O 1.35900 * 120.02321 * 180.02562 * 14 7 6 16 16 C 1.42900 * 116.99698 * 180.02562 * 15 14 7 17 17 C 1.53007 * 109.46842 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.47293 * 65.00280 * 17 16 15 19 19 Si 1.63098 * 114.00095 * 179.97438 * 18 17 16 20 20 C 1.86299 * 109.46919 * 299.99762 * 19 18 17 21 21 C 1.86305 * 109.47253 * 59.99651 * 19 18 17 22 22 C 1.86300 * 109.47034 * 179.97438 * 19 18 17 23 23 C 1.52995 * 109.47434 * 59.99870 * 22 19 18 24 24 C 1.53000 * 109.47114 * 180.02562 * 22 19 18 25 25 C 1.53002 * 109.46849 * 299.99454 * 22 19 18 26 26 C 1.38610 * 119.94721 * 359.74859 * 14 7 6 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 32 32 H 1.07999 * 119.97216 * 359.97438 * 5 4 3 33 33 H 1.08007 * 119.94479 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47779 * 224.99748 * 8 7 6 35 35 H 0.96700 * 113.99553 * 300.00102 * 9 8 7 36 36 H 1.08997 * 109.47217 * 299.99449 * 16 15 14 37 37 H 1.08996 * 109.47673 * 60.00102 * 16 15 14 38 38 H 1.09002 * 109.46763 * 184.99841 * 17 16 15 39 39 H 1.09000 * 109.46905 * 304.99417 * 17 16 15 40 40 H 1.08994 * 109.47328 * 60.00302 * 20 19 18 41 41 H 1.09004 * 109.47097 * 180.02562 * 20 19 18 42 42 H 1.09007 * 109.47291 * 299.99915 * 20 19 18 43 43 H 1.08998 * 109.46720 * 59.99925 * 21 19 18 44 44 H 1.08994 * 109.46652 * 180.02562 * 21 19 18 45 45 H 1.08998 * 109.46897 * 300.00172 * 21 19 18 46 46 H 1.08999 * 109.47102 * 59.99666 * 23 22 19 47 47 H 1.09003 * 109.47425 * 180.02562 * 23 22 19 48 48 H 1.09004 * 109.46664 * 300.00139 * 23 22 19 49 49 H 1.09000 * 109.47463 * 59.99570 * 24 22 19 50 50 H 1.08998 * 109.47389 * 179.97438 * 24 22 19 51 51 H 1.08999 * 109.46659 * 299.99866 * 24 22 19 52 52 H 1.09001 * 109.46974 * 60.00769 * 25 22 19 53 53 H 1.09003 * 109.47271 * 179.97438 * 25 22 19 54 54 H 1.08994 * 109.47353 * 300.00607 * 25 22 19 55 55 H 1.08005 * 120.05431 * 180.25384 * 26 14 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1993 0.4253 -0.0005 6 6 5.5694 0.6057 -0.0016 7 6 6.1006 1.8811 -0.0022 8 6 7.5951 2.0742 -0.0028 9 8 8.0224 2.4806 -1.3045 10 14 8.4286 0.4714 0.4522 11 1 8.0643 -0.5743 -0.5374 12 1 9.9014 0.6618 0.4522 13 1 7.9845 0.0491 1.8048 14 6 5.2588 2.9846 -0.0022 15 8 5.7819 4.2389 -0.0033 16 6 4.8564 5.3277 -0.0027 17 6 5.6252 6.6505 -0.0035 18 8 6.3559 6.7761 -1.2251 19 14 7.2194 8.1548 -1.3429 20 6 6.0709 9.6178 -1.2364 21 6 8.4562 8.2337 0.0481 22 6 8.1178 8.1873 -2.9746 23 6 7.1025 8.1222 -4.1173 24 6 8.9283 9.4803 -3.0849 25 6 9.0611 6.9858 -3.0614 26 6 3.8842 2.8062 -0.0070 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7865 -0.5726 0.0003 33 1 6.2261 -0.2518 -0.0012 34 1 7.8627 2.8417 0.7235 35 1 7.8167 1.8439 -2.0025 36 1 4.2286 5.2714 -0.8920 37 1 4.2305 5.2722 0.8879 38 1 4.9227 7.4791 0.0865 39 1 6.3180 6.6685 0.8379 40 1 5.5456 9.5986 -0.2815 41 1 6.6479 10.5392 -1.3155 42 1 5.3472 9.5717 -2.0502 43 1 9.1281 7.3777 -0.0142 44 1 9.0329 9.1552 -0.0305 45 1 7.9309 8.2144 1.0029 46 1 6.4305 8.9782 -4.0554 47 1 7.6282 8.1408 -5.0720 48 1 6.5254 7.2008 -4.0385 49 1 9.6517 9.5262 -2.2708 50 1 9.4543 9.4991 -4.0393 51 1 8.2566 10.3364 -3.0228 52 1 8.4840 6.0644 -2.9827 53 1 9.5865 7.0045 -4.0163 54 1 9.7844 7.0321 -2.2473 55 1 3.2275 3.6637 -0.0112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26952_10264010.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:17:55 Heat of formation + Delta-G solvation = -180.384261 kcal Electronic energy + Delta-G solvation = -31082.458431 eV Core-core repulsion = 27015.675799 eV Total energy + Delta-G solvation = -4066.782631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.66904 -40.15615 -38.65083 -37.58305 -36.89267 -36.80393 -33.13357 -31.64691 -31.34006 -30.17500 -29.29484 -29.04451 -27.82109 -27.36403 -26.27737 -25.10560 -24.28038 -22.40363 -22.19209 -20.39526 -19.97544 -18.28575 -18.06071 -17.72249 -17.36707 -17.13140 -16.71884 -16.37947 -16.06481 -15.85486 -15.67301 -15.53093 -15.11539 -15.06445 -14.83110 -14.72396 -14.55526 -14.22632 -14.00186 -13.87794 -13.63455 -13.50328 -13.36384 -13.24562 -13.16494 -13.00748 -12.94232 -12.93963 -12.90410 -12.61700 -12.38604 -12.17433 -12.16782 -12.04104 -11.94030 -11.77998 -11.67550 -11.55242 -11.51857 -11.43006 -11.23358 -10.29464 -10.27310 -10.03224 -9.65467 -9.04710 0.21192 0.35212 1.21026 1.44671 1.54932 1.55496 1.80425 1.93327 2.04868 2.16118 2.29753 2.49971 2.59981 3.63966 3.67468 3.89021 3.92360 4.03837 4.04180 4.08159 4.10949 4.14245 4.14859 4.23383 4.31572 4.34864 4.36154 4.41294 4.47230 4.49486 4.69335 4.71513 4.76186 4.79933 4.80085 4.81246 4.83997 4.84331 4.86660 4.91767 5.01585 5.04476 5.10663 5.10748 5.18732 5.21841 5.28213 5.29757 5.35112 5.42403 5.44670 5.50659 5.56083 5.61239 5.65899 6.28610 6.44808 6.81694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.330 6.330 4 C 0.164 3.836 5 C -0.245 4.245 6 C -0.051 4.051 7 C -0.202 4.202 8 C -0.068 4.068 9 O -0.550 6.550 10 Si 0.983 3.017 11 H -0.240 1.240 12 H -0.276 1.276 13 H -0.255 1.255 14 C 0.186 3.814 15 O -0.302 6.302 16 C 0.045 3.955 17 C 0.077 3.923 18 O -0.637 6.637 19 Si 1.313 2.687 20 C -0.514 4.514 21 C -0.518 4.518 22 C -0.383 4.383 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.258 4.258 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.383 0.617 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.049 0.951 51 H 0.066 0.934 52 H 0.051 0.949 53 H 0.047 0.953 54 H 0.056 0.944 55 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 -1.418 1.763 4.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.244 6.244 4 C 0.118 3.882 5 C -0.264 4.264 6 C -0.069 4.069 7 C -0.204 4.204 8 C -0.177 4.177 9 O -0.357 6.357 10 Si 0.806 3.194 11 H -0.164 1.164 12 H -0.201 1.201 13 H -0.179 1.179 14 C 0.139 3.861 15 O -0.215 6.215 16 C -0.030 4.030 17 C 0.002 3.998 18 O -0.596 6.596 19 Si 1.443 2.557 20 C -0.616 4.616 21 C -0.619 4.619 22 C -0.425 4.425 23 C -0.192 4.192 24 C -0.197 4.197 25 C -0.191 4.191 26 C -0.277 4.277 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.124 0.876 35 H 0.231 0.769 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.068 0.932 51 H 0.084 0.916 52 H 0.070 0.930 53 H 0.066 0.934 54 H 0.075 0.925 55 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.723 -1.704 2.170 3.876 hybrid contribution -0.319 0.302 -0.462 0.638 sum -3.042 -1.402 1.708 3.760 Atomic orbital electron populations 1.21818 0.91805 1.04144 1.03138 1.23094 0.96646 0.80506 1.02645 1.86059 1.18737 1.31633 1.87995 1.18833 0.82734 0.93684 0.92922 1.21316 0.93765 0.98963 1.12330 1.20934 0.95279 0.95832 0.94825 1.19706 0.96591 0.91363 1.12693 1.24867 0.92055 1.11842 0.88953 1.86539 1.82153 1.50193 1.16773 0.85291 0.78327 0.74989 0.80824 1.16354 1.20085 1.17870 1.18567 0.90369 0.85097 0.92073 1.86223 1.36111 1.11822 1.87333 1.23303 0.92038 0.84473 1.03155 1.22337 0.96080 0.95764 0.85614 1.85412 1.67712 1.65284 1.41228 0.76267 0.61369 0.54130 0.63969 1.27034 1.12180 1.17483 1.04889 1.27109 1.14123 1.04626 1.16050 1.25929 1.03167 0.97747 1.15697 1.21520 0.98328 1.01747 0.97609 1.21595 0.99893 0.96083 1.02096 1.21492 0.98881 0.97204 1.01476 1.20577 0.94026 0.96988 1.16159 0.91979 0.88340 0.91901 0.90799 0.90700 0.83086 0.83419 0.87593 0.76906 0.90841 0.88719 0.87807 0.90864 0.90573 0.90285 0.90963 0.91768 0.90375 0.90949 0.91800 0.93410 0.92923 0.91957 0.93185 0.91551 0.93035 0.93429 0.92493 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.58 10.28 71.98 0.74 1.32 16 2 C 0.05 -0.08 5.46 71.98 0.39 0.31 16 3 O -0.33 -1.53 10.13 -92.39 -0.94 -2.46 16 4 C 0.16 0.85 6.68 22.49 0.15 1.00 16 5 C -0.25 -0.53 9.04 22.38 0.20 -0.33 16 6 C -0.05 -0.11 8.65 22.24 0.19 0.08 16 7 C -0.20 -1.01 5.27 -19.75 -0.10 -1.11 16 8 C -0.07 -0.26 2.37 71.23 0.17 -0.09 16 9 O -0.55 -3.19 12.88 -148.98 -1.92 -5.11 16 10 Si 0.98 0.67 25.49 68.60 1.75 2.42 16 11 H -0.24 0.38 6.73 99.48 0.67 1.05 16 12 H -0.28 -1.16 7.11 99.48 0.71 -0.46 16 13 H -0.25 -0.34 7.11 99.48 0.71 0.37 16 14 C 0.19 1.25 6.66 22.49 0.15 1.40 16 15 O -0.30 -2.11 9.43 -87.79 -0.83 -2.94 16 16 C 0.05 0.04 5.12 71.98 0.37 0.40 16 17 C 0.08 -0.09 5.50 71.98 0.40 0.31 16 18 O -0.64 -1.96 8.52 -144.35 -1.23 -3.19 16 19 Si 1.31 -0.77 8.45 68.60 0.58 -0.19 16 20 C -0.51 1.10 8.50 113.37 0.96 2.06 16 21 C -0.52 -0.20 8.50 113.37 0.96 0.77 16 22 C -0.38 -0.74 0.53 -10.79 -0.01 -0.74 16 23 C -0.13 -0.34 7.85 71.98 0.56 0.22 16 24 C -0.14 -0.05 7.85 71.98 0.56 0.51 16 25 C -0.13 -0.59 7.85 71.98 0.56 -0.03 16 26 C -0.26 -1.45 8.97 22.46 0.20 -1.25 16 27 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.07 -0.29 7.66 -2.39 -0.02 -0.30 16 31 H 0.07 -0.30 7.66 -2.39 -0.02 -0.32 16 32 H 0.15 -0.41 6.29 -2.91 -0.02 -0.42 16 33 H 0.15 -0.32 4.88 -2.91 -0.01 -0.33 16 34 H 0.11 0.51 7.82 -2.39 -0.02 0.49 16 35 H 0.38 -0.42 8.70 -74.06 -0.64 -1.07 16 36 H 0.07 0.06 7.65 -2.39 -0.02 0.04 16 37 H 0.09 -0.35 7.67 -2.39 -0.02 -0.37 16 38 H 0.10 -0.74 7.21 -2.39 -0.02 -0.76 16 39 H 0.07 -0.20 7.22 -2.39 -0.02 -0.22 16 40 H 0.08 -0.30 7.48 -2.39 -0.02 -0.32 16 41 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 42 H 0.07 -0.12 7.79 -2.38 -0.02 -0.14 16 43 H 0.06 0.17 7.79 -2.39 -0.02 0.16 16 44 H 0.08 -0.06 7.79 -2.39 -0.02 -0.08 16 45 H 0.07 -0.08 7.48 -2.39 -0.02 -0.09 16 46 H 0.06 0.01 7.80 -2.39 -0.02 0.00 16 47 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.05 0.21 7.97 -2.39 -0.02 0.19 16 49 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 50 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 51 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 52 H 0.05 0.35 7.97 -2.39 -0.02 0.34 16 53 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 54 H 0.06 0.20 7.79 -2.39 -0.02 0.18 16 55 H 0.14 0.44 6.30 -2.91 -0.02 0.42 16 Total: 0.00 -14.28 432.06 4.81 -9.47 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: 0.92 Total: -2.82 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.48 Total: 4.83 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -4.91 Total: -13.70 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: 2.33 Total: 2.23 kcal Total: -14.28 4.81 -9.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26952_10264010.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.916 kcal (2) G-P(sol) polarization free energy of solvation -14.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds