Wall clock time and date at job start Mon Mar 8 2021 16:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47078 * 2 1 4 4 O 1.42903 * 109.46765 * 179.97438 * 3 2 1 5 5 C 1.35899 * 117.00018 * 180.02562 * 4 3 2 6 6 C 1.38607 * 120.02933 * 179.97438 * 5 4 3 7 7 C 1.38661 * 119.89089 * 179.69496 * 6 5 4 8 8 O 1.35897 * 120.02763 * 180.25693 * 7 6 5 9 9 C 1.42901 * 116.99944 * 359.97438 * 8 7 6 10 10 C 1.53000 * 109.46816 * 180.02562 * 9 8 7 11 11 H 1.09000 * 112.85365 * 316.19724 * 10 9 8 12 12 C 1.53784 * 113.61516 * 87.50848 * 10 9 8 13 13 C 1.53773 * 87.08173 * 139.97810 * 12 10 9 14 14 H 1.08999 * 113.61932 * 89.11248 * 13 12 10 15 15 O 1.42903 * 113.68920 * 220.00759 * 13 12 10 16 16 C 1.53784 * 87.08441 * 334.56465 * 13 12 10 17 17 C 1.38749 * 119.94317 * 0.28018 * 7 6 5 18 18 C 1.50703 * 119.97330 * 179.97438 * 17 7 6 19 19 O 1.42901 * 109.46927 * 285.00392 * 18 17 7 20 20 Si 1.86294 * 109.47316 * 164.99877 * 18 17 7 21 21 C 1.38201 * 120.05677 * 359.97438 * 17 7 6 22 22 C 1.38157 * 120.10718 * 359.97438 * 21 17 7 23 23 H 1.08996 * 109.47318 * 299.99893 * 1 2 3 24 24 H 1.09001 * 109.46853 * 59.99907 * 1 2 3 25 25 H 1.08998 * 109.47414 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46703 * 240.00128 * 2 1 3 27 27 H 1.09001 * 109.46853 * 120.00093 * 2 1 3 28 28 H 1.09004 * 109.47249 * 60.00463 * 3 2 1 29 29 H 1.08993 * 109.47505 * 300.00068 * 3 2 1 30 30 H 1.08002 * 120.05734 * 359.97438 * 6 5 4 31 31 H 1.08998 * 109.47241 * 300.00352 * 9 8 7 32 32 H 1.09007 * 109.46934 * 60.00240 * 9 8 7 33 33 H 1.09000 * 113.60938 * 254.53094 * 12 10 9 34 34 H 1.08995 * 113.61040 * 25.42545 * 12 10 9 35 35 H 0.96703 * 113.99912 * 277.53230 * 15 13 12 36 36 H 1.08999 * 113.61473 * 270.88645 * 16 13 12 37 37 H 1.09002 * 113.61313 * 139.98002 * 16 13 12 38 38 H 1.09002 * 109.46719 * 44.99939 * 18 17 7 39 39 H 0.96703 * 113.99732 * 299.99626 * 19 18 17 40 40 H 1.48503 * 109.99863 * 58.68426 * 20 18 17 41 41 H 1.48497 * 110.00055 * 179.97438 * 20 18 17 42 42 H 1.08001 * 119.94327 * 180.02562 * 21 17 7 43 43 H 1.07998 * 119.96795 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0861 2.6532 0.0012 6 6 5.4702 2.7264 0.0024 7 6 6.0968 3.9633 -0.0034 8 8 7.4537 4.0383 -0.0076 9 6 8.1717 2.8028 -0.0051 10 6 9.6751 3.0866 -0.0099 11 1 9.9548 3.8752 -0.7085 12 6 10.2726 3.2659 1.3958 13 6 11.4868 2.4656 0.8961 14 1 12.2628 3.0849 0.4460 15 8 12.0017 1.5429 1.8582 16 6 10.5405 1.8211 -0.1305 17 6 5.3372 5.1245 -0.0044 18 6 6.0175 6.4692 -0.0101 19 8 6.5475 6.7403 1.2890 20 14 4.7828 7.7879 -0.4648 21 6 3.9573 5.0489 -0.0002 22 6 3.3307 3.8176 0.0045 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 6.0597 1.8215 0.0032 31 1 7.9125 2.2337 0.8876 32 1 7.9074 2.2272 -0.8924 33 1 10.5041 4.3020 1.6428 34 1 9.7076 2.7593 2.1782 35 1 12.5976 1.9424 2.5066 36 1 10.0489 0.9195 0.2347 37 1 10.9885 1.6908 -1.1157 38 1 6.8279 6.4633 -0.7391 39 1 5.8810 6.7607 1.9893 40 1 3.6568 7.7850 0.5035 41 1 5.4412 9.1189 -0.4733 42 1 3.3678 5.9539 -0.0015 43 1 2.2522 3.7612 0.0073 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26953_11354858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:03:59 Heat of formation + Delta-G solvation = -108.744495 kcal Electronic energy + Delta-G solvation = -23935.614555 eV Core-core repulsion = 20334.994276 eV Total energy + Delta-G solvation = -3600.620278 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78134 -40.64080 -39.86558 -38.40129 -37.16587 -36.02749 -34.86067 -32.05555 -31.34232 -29.26518 -27.72412 -26.77133 -26.09511 -24.50437 -23.24788 -22.42002 -22.03504 -20.65801 -19.82259 -18.66334 -18.32086 -17.61608 -17.40274 -17.33690 -17.00660 -16.54518 -16.35334 -15.93430 -15.86612 -15.20130 -15.11092 -15.08802 -14.59198 -14.50664 -13.90717 -13.81941 -13.53261 -13.50409 -13.29953 -12.94865 -12.68405 -12.66683 -12.55578 -12.35522 -12.12112 -12.02929 -11.89224 -11.73541 -11.60270 -11.49211 -11.23875 -10.78172 -10.51581 -9.71415 -9.10723 -4.90888 0.17659 0.30299 1.33169 1.58015 1.94288 1.96272 2.17395 2.54829 3.26144 3.41801 3.48913 3.53494 3.65078 3.76364 3.78948 3.89948 3.91844 3.92094 4.03286 4.10310 4.15526 4.20405 4.26414 4.32565 4.35214 4.44198 4.52534 4.58614 4.65431 4.67750 4.71043 4.75994 4.77583 4.94629 5.01382 5.08769 5.10538 5.14893 5.22544 5.25435 5.32112 5.33483 5.51389 6.21858 6.37674 6.54914 6.83507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.052 3.948 4 O -0.331 6.331 5 C 0.166 3.834 6 C -0.259 4.259 7 C 0.182 3.818 8 O -0.309 6.309 9 C 0.067 3.933 10 C -0.103 4.103 11 H 0.110 0.890 12 C -0.163 4.163 13 C 0.076 3.924 14 H 0.100 0.900 15 O -0.581 6.581 16 C -0.119 4.119 17 C -0.196 4.196 18 C -0.071 4.071 19 O -0.548 6.548 20 Si 0.774 3.226 21 C -0.041 4.041 22 C -0.241 4.241 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.395 0.605 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.381 0.619 40 H -0.269 1.269 41 H -0.303 1.303 42 H 0.157 0.843 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 -0.334 -2.190 4.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.023 4.023 4 O -0.244 6.244 5 C 0.120 3.880 6 C -0.279 4.279 7 C 0.135 3.865 8 O -0.222 6.222 9 C -0.008 4.008 10 C -0.121 4.121 11 H 0.128 0.872 12 C -0.201 4.201 13 C 0.017 3.983 14 H 0.118 0.882 15 O -0.389 6.389 16 C -0.157 4.157 17 C -0.197 4.197 18 C -0.179 4.179 19 O -0.355 6.355 20 Si 0.679 3.321 21 C -0.058 4.058 22 C -0.260 4.260 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.245 0.755 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.230 0.770 40 H -0.195 1.195 41 H -0.231 1.231 42 H 0.174 0.826 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.383 -0.065 -2.612 4.274 hybrid contribution 0.460 -0.101 1.663 1.728 sum -2.923 -0.165 -0.949 3.077 Atomic orbital electron populations 1.21687 0.92945 1.03107 1.02818 1.21503 0.97059 0.94188 1.03331 1.23172 0.76515 0.99803 1.02785 1.86044 1.23355 1.27082 1.87952 1.18832 0.91521 0.84843 0.92824 1.20537 0.93308 0.97704 1.16324 1.18584 0.82698 0.92613 0.92613 1.86145 1.14863 1.33611 1.87621 1.22961 0.91245 0.84549 1.02014 1.22287 0.91161 0.99795 0.98891 0.87227 1.23723 0.98351 1.01248 0.96757 1.23397 0.93763 0.90969 0.90180 0.88198 1.86477 1.67889 1.39029 1.45550 1.23071 0.95875 0.96939 0.99791 1.19630 0.93339 0.94121 1.12611 1.25084 1.06383 0.98851 0.87577 1.86600 1.38567 1.92943 1.17427 0.94069 0.75540 0.73727 0.88791 1.20975 0.92372 0.98526 0.93976 1.21353 1.01378 0.91310 1.11954 0.91865 0.91637 0.91383 0.91162 0.91433 0.90848 0.90369 0.84489 0.91940 0.90660 0.90912 0.90306 0.75492 0.89564 0.88957 0.87406 0.77000 1.19542 1.23146 0.82618 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.76 9.91 71.98 0.71 1.47 16 2 C -0.12 0.29 6.30 30.59 0.19 0.49 16 3 C 0.05 -0.08 4.74 71.98 0.34 0.26 16 4 O -0.33 -1.60 10.13 -92.41 -0.94 -2.53 16 5 C 0.17 0.82 6.68 22.49 0.15 0.97 16 6 C -0.26 -1.58 8.97 22.46 0.20 -1.38 16 7 C 0.18 1.18 6.66 22.49 0.15 1.33 16 8 O -0.31 -2.15 9.46 -92.39 -0.87 -3.02 16 9 C 0.07 0.17 4.58 71.98 0.33 0.50 16 10 C -0.10 -0.05 4.01 -10.26 -0.04 -0.10 16 11 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 12 C -0.16 -0.25 7.47 31.12 0.23 -0.02 16 13 C 0.08 0.01 5.21 31.12 0.16 0.17 16 14 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 15 O -0.58 -1.56 13.67 -148.98 -2.04 -3.60 16 16 C -0.12 0.03 7.47 31.12 0.23 0.26 16 17 C -0.20 -0.75 5.27 -19.75 -0.10 -0.86 16 18 C -0.07 -0.23 2.37 71.24 0.17 -0.06 16 19 O -0.55 -3.55 12.88 -148.98 -1.92 -5.47 16 20 Si 0.77 -0.75 30.24 68.60 2.07 1.33 16 21 C -0.04 -0.02 8.65 22.24 0.19 0.17 16 22 C -0.24 -0.26 9.04 22.38 0.20 -0.06 16 23 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 24 H 0.06 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 27 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.07 -0.25 7.65 -2.38 -0.02 -0.27 16 29 H 0.08 -0.32 7.67 -2.39 -0.02 -0.34 16 30 H 0.14 0.67 6.30 -2.91 -0.02 0.65 16 31 H 0.06 0.18 7.36 -2.39 -0.02 0.16 16 32 H 0.08 0.04 7.66 -2.38 -0.02 0.02 16 33 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.08 0.30 7.89 -2.39 -0.02 0.28 16 35 H 0.40 -2.09 9.12 -74.06 -0.68 -2.77 16 36 H 0.09 0.11 8.10 -2.39 -0.02 0.09 16 37 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.11 0.44 7.82 -2.39 -0.02 0.42 16 39 H 0.38 0.12 8.70 -74.06 -0.64 -0.53 16 40 H -0.27 -0.12 6.68 99.48 0.66 0.55 16 41 H -0.30 -2.04 7.11 99.48 0.71 -1.33 16 42 H 0.16 -0.63 4.85 -2.91 -0.01 -0.65 16 43 H 0.15 -0.59 6.29 -2.91 -0.02 -0.61 16 Total: 0.00 -15.49 350.22 -0.87 -16.36 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: -0.30 Total: -6.24 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 3.12 Total: 3.17 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -5.77 Total: -14.62 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: 2.07 Total: 1.33 kcal Total: -15.49 -0.87 -16.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26953_11354858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.381 kcal (2) G-P(sol) polarization free energy of solvation -15.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds