Wall clock time and date at job start Mon Mar 8 2021 17:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 O 1.42901 * 109.46823 * 179.97438 * 3 2 1 5 5 C 1.35902 * 116.99722 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.02436 * 0.02562 * 5 4 3 7 7 C 1.38204 * 120.05000 * 179.71961 * 6 5 4 8 8 C 1.38157 * 120.10656 * 0.51733 * 7 6 5 9 9 C 1.50701 * 119.96745 * 179.76324 * 8 7 6 10 10 O 1.42895 * 109.46986 * 254.72121 * 9 8 7 11 11 Si 1.86296 * 109.47224 * 14.72072 * 9 8 7 12 12 H 1.48504 * 109.47066 * 60.00280 * 11 9 8 13 13 H 1.48500 * 109.47013 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47488 * 299.99945 * 11 9 8 15 15 C 1.38792 * 120.05804 * 359.48244 * 8 7 6 16 16 O 1.35890 * 120.02837 * 180.27576 * 15 8 7 17 17 C 1.42902 * 117.00094 * 173.83268 * 16 15 8 18 18 Si 1.86306 * 109.47177 * 282.07564 * 17 16 15 19 19 C 1.86302 * 109.47093 * 66.58255 * 18 17 16 20 20 C 1.86295 * 109.47183 * 186.58295 * 18 17 16 21 21 C 1.86293 * 109.47044 * 306.58490 * 18 17 16 22 22 C 1.38621 * 119.94437 * 0.25927 * 15 8 7 23 23 H 1.09004 * 109.47176 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46928 * 299.99643 * 1 2 3 25 25 H 1.08994 * 109.47476 * 59.99754 * 1 2 3 26 26 H 1.09007 * 109.46674 * 239.99877 * 2 1 3 27 27 H 1.09001 * 109.46890 * 120.00528 * 2 1 3 28 28 H 1.08997 * 109.46856 * 60.00314 * 3 2 1 29 29 H 1.08994 * 109.47075 * 300.00491 * 3 2 1 30 30 H 1.07996 * 119.97270 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.94648 * 180.27439 * 7 6 5 32 32 H 1.08997 * 109.46935 * 134.72213 * 9 8 7 33 33 H 0.96703 * 113.99806 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.46931 * 42.07603 * 17 16 15 35 35 H 1.08999 * 109.47400 * 162.07339 * 17 16 15 36 36 H 1.09004 * 109.46881 * 55.55457 * 19 18 17 37 37 H 1.08994 * 109.47364 * 175.54897 * 19 18 17 38 38 H 1.08998 * 109.47207 * 295.56097 * 19 18 17 39 39 H 1.09010 * 109.47156 * 60.00068 * 20 18 17 40 40 H 1.08998 * 109.47405 * 180.02562 * 20 18 17 41 41 H 1.08996 * 109.47129 * 300.00490 * 20 18 17 42 42 H 1.09002 * 109.47432 * 64.99989 * 21 18 17 43 43 H 1.08998 * 109.47290 * 185.00314 * 21 18 17 44 44 H 1.08999 * 109.47505 * 305.00320 * 21 18 17 45 45 H 1.07990 * 120.05303 * 179.97438 * 22 15 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0861 2.6532 0.0012 6 6 3.3309 3.8173 0.0018 7 6 3.9578 5.0489 0.0083 8 6 5.3373 5.1244 0.0034 9 6 6.0176 6.4692 0.0051 10 8 6.5446 6.7380 -1.2956 11 14 4.7838 7.7887 0.4601 12 1 4.2361 7.5094 1.8119 13 1 5.4543 9.1137 0.4624 14 1 3.6776 7.7950 -0.5305 15 6 6.0970 3.9630 0.0029 16 8 7.4539 4.0379 0.0037 17 6 8.1714 2.8096 0.1399 18 14 8.1543 2.2749 1.9245 19 6 6.4137 1.8385 2.4253 20 6 9.2535 0.7859 2.1372 21 6 8.7783 3.6656 2.9954 22 6 5.4706 2.7264 0.0017 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 2.2524 3.7607 0.0013 31 1 3.3683 5.9539 0.0132 32 1 6.8295 6.4646 0.7323 33 1 6.9978 7.5891 -1.3682 34 1 7.6987 2.0428 -0.4738 35 1 9.2015 2.9524 -0.1867 36 1 6.0203 1.0799 1.7485 37 1 6.4151 1.4508 3.4440 38 1 5.7873 2.7292 2.3762 39 1 10.2719 1.0413 1.8442 40 1 9.2431 0.4728 3.1812 41 1 8.8884 -0.0277 1.5105 42 1 8.0863 4.5059 2.9396 43 1 8.8525 3.3240 4.0279 44 1 9.7614 3.9807 2.6456 45 1 6.0601 1.8215 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_26953_3095236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:01:13 Heat of formation + Delta-G solvation = -121.160772 kcal Electronic energy + Delta-G solvation = -23284.534888 eV Core-core repulsion = 20005.615429 eV Total energy + Delta-G solvation = -3278.919459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60315 -40.00054 -38.12435 -36.99921 -34.91554 -32.17549 -31.15886 -29.71792 -28.47639 -28.37384 -27.94220 -27.50870 -25.89525 -23.57371 -22.44977 -21.89994 -19.69618 -18.34288 -17.72577 -17.29969 -17.24676 -16.80021 -16.50981 -16.00887 -15.63962 -15.20305 -15.09365 -14.63402 -14.33375 -14.13395 -14.05034 -13.87601 -13.80867 -13.70189 -13.46534 -13.34301 -13.22018 -13.13174 -13.06613 -12.96618 -12.66481 -12.53896 -12.16363 -12.08082 -12.04072 -11.69469 -11.60618 -11.50828 -10.94214 -10.83623 -10.64942 -10.13458 -9.34844 -8.83279 0.36746 0.48308 1.23161 1.48229 1.48916 1.54248 1.68263 1.76640 1.95533 2.13248 2.49954 2.53145 2.72269 3.61930 3.77440 3.85595 3.87983 4.05758 4.09377 4.16941 4.21486 4.27377 4.40966 4.43478 4.45584 4.60373 4.63483 4.65432 4.65721 4.70378 4.75419 4.76060 4.77733 4.83004 4.85525 4.97944 5.04766 5.14440 5.20409 5.39743 5.41153 5.44345 5.53151 5.60530 5.64300 6.34945 6.52710 6.77723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.057 3.943 4 O -0.313 6.313 5 C 0.175 3.825 6 C -0.242 4.242 7 C -0.047 4.047 8 C -0.148 4.148 9 C -0.064 4.064 10 O -0.542 6.542 11 Si 0.939 3.061 12 H -0.248 1.248 13 H -0.256 1.256 14 H -0.249 1.249 15 C 0.188 3.812 16 O -0.276 6.276 17 C -0.249 4.249 18 Si 0.985 3.015 19 C -0.447 4.447 20 C -0.447 4.447 21 C -0.441 4.441 22 C -0.242 4.242 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.074 0.926 33 H 0.375 0.625 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 -0.745 1.779 2.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.018 4.018 4 O -0.226 6.226 5 C 0.129 3.871 6 C -0.261 4.261 7 C -0.065 4.065 8 C -0.149 4.149 9 C -0.174 4.174 10 O -0.347 6.347 11 Si 0.762 3.238 12 H -0.172 1.172 13 H -0.180 1.180 14 H -0.173 1.173 15 C 0.141 3.859 16 O -0.188 6.188 17 C -0.369 4.369 18 Si 1.181 2.819 19 C -0.555 4.555 20 C -0.555 4.555 21 C -0.550 4.550 22 C -0.261 4.261 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.092 0.908 33 H 0.222 0.778 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.425 -0.718 1.820 2.421 hybrid contribution 0.345 0.077 -0.153 0.385 sum -1.080 -0.641 1.667 2.087 Atomic orbital electron populations 1.21697 0.94032 1.02789 1.02309 1.21497 0.96214 0.94598 1.03845 1.22955 0.77957 0.99141 1.01757 1.86049 1.21695 1.26829 1.88010 1.18602 0.91395 0.84150 0.92916 1.21046 1.00249 0.91778 1.13039 1.20657 0.92770 0.97754 0.95274 1.18432 0.92213 0.92226 1.12000 1.24464 1.03845 1.00157 0.88984 1.86550 1.76921 1.42172 1.29061 0.85912 0.79380 0.77592 0.80899 1.17159 1.17997 1.17259 1.18383 0.83076 0.92068 0.92366 1.86110 1.14253 1.31651 1.86779 1.28229 0.99106 0.89475 1.20108 0.79907 0.68633 0.67688 0.65627 1.26433 1.17589 1.05781 1.05696 1.26052 1.09958 1.14361 1.05141 1.25988 1.06390 1.13230 1.09372 1.20477 0.92724 0.97865 1.15005 0.91540 0.92283 0.92281 0.90741 0.90728 0.91723 0.91734 0.85040 0.85187 0.90768 0.77788 0.90815 0.87293 0.90707 0.91229 0.90800 0.90995 0.90710 0.91018 0.90898 0.91099 0.91075 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 9.91 37.16 0.37 0.66 16 2 C -0.12 0.11 6.30 -26.73 -0.17 -0.06 16 3 C 0.06 0.00 4.74 37.16 0.18 0.17 16 4 O -0.31 -0.76 10.14 -19.43 -0.20 -0.96 16 5 C 0.18 0.49 6.68 -39.24 -0.26 0.23 16 6 C -0.24 -0.50 9.04 -39.40 -0.36 -0.86 16 7 C -0.05 -0.11 8.65 -39.62 -0.34 -0.45 16 8 C -0.15 -0.47 5.31 -104.45 -0.55 -1.02 16 9 C -0.06 -0.10 2.37 36.01 0.09 -0.02 16 10 O -0.54 -1.21 12.86 -35.23 -0.45 -1.66 16 11 Si 0.94 0.43 25.48 -169.99 -4.33 -3.90 16 12 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 13 H -0.26 -0.12 7.11 56.52 0.40 0.29 16 14 H -0.25 -0.32 6.74 56.52 0.38 0.06 16 15 C 0.19 0.61 5.76 -39.24 -0.23 0.38 16 16 O -0.28 -0.75 9.12 -19.39 -0.18 -0.92 16 17 C -0.25 0.04 5.31 101.05 0.54 0.57 16 18 Si 0.98 -1.71 11.68 -169.99 -1.99 -3.70 16 19 C -0.45 0.10 7.04 101.05 0.71 0.81 16 20 C -0.45 0.72 8.65 101.05 0.87 1.60 16 21 C -0.44 0.30 8.65 101.05 0.87 1.18 16 22 C -0.24 -0.64 5.58 -39.29 -0.22 -0.85 16 23 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 24 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 25 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 28 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 29 H 0.06 -0.05 7.66 -51.93 -0.40 -0.44 16 30 H 0.13 0.00 6.29 -52.49 -0.33 -0.33 16 31 H 0.13 0.10 4.87 -52.49 -0.26 -0.15 16 32 H 0.07 0.03 7.82 -51.93 -0.41 -0.37 16 33 H 0.38 -0.85 8.74 45.56 0.40 -0.45 16 34 H 0.07 -0.04 6.06 -51.93 -0.31 -0.36 16 35 H 0.11 -0.15 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 0.00 6.50 -51.93 -0.34 -0.34 16 37 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 38 H 0.07 0.07 6.55 -51.93 -0.34 -0.27 16 39 H 0.07 -0.13 7.96 -51.92 -0.41 -0.54 16 40 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 41 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 43 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 44 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 45 H 0.14 0.16 4.24 -52.49 -0.22 -0.06 16 LS Contribution 355.03 15.07 5.35 5.35 Total: 0.00 -5.61 355.03 -7.14 -12.75 By element: Atomic # 1 Polarization: -2.45 SS G_CDS: -6.84 Total: -9.30 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 1.50 Total: 2.33 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: -0.83 Total: -3.54 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -6.32 Total: -7.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -5.61 -7.14 -12.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26953_3095236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.407 kcal (2) G-P(sol) polarization free energy of solvation -5.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds