Wall clock time and date at job start Mon Mar 8 2021 17:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 O 1.42901 * 109.46823 * 179.97438 * 3 2 1 5 5 C 1.35902 * 116.99722 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.02436 * 0.02562 * 5 4 3 7 7 C 1.38204 * 120.05000 * 179.71961 * 6 5 4 8 8 C 1.38157 * 120.10656 * 0.51733 * 7 6 5 9 9 C 1.50701 * 119.96745 * 179.76324 * 8 7 6 10 10 O 1.42895 * 109.46986 * 254.72121 * 9 8 7 11 11 Si 1.86296 * 109.47224 * 14.72072 * 9 8 7 12 12 H 1.48504 * 109.47066 * 60.00280 * 11 9 8 13 13 H 1.48500 * 109.47013 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47488 * 299.99945 * 11 9 8 15 15 C 1.38792 * 120.05804 * 359.48244 * 8 7 6 16 16 O 1.35890 * 120.02837 * 180.27576 * 15 8 7 17 17 C 1.42902 * 117.00094 * 173.83268 * 16 15 8 18 18 Si 1.86306 * 109.47177 * 282.07564 * 17 16 15 19 19 C 1.86302 * 109.47093 * 66.58255 * 18 17 16 20 20 C 1.86295 * 109.47183 * 186.58295 * 18 17 16 21 21 C 1.86293 * 109.47044 * 306.58490 * 18 17 16 22 22 C 1.38621 * 119.94437 * 0.25927 * 15 8 7 23 23 H 1.09004 * 109.47176 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46928 * 299.99643 * 1 2 3 25 25 H 1.08994 * 109.47476 * 59.99754 * 1 2 3 26 26 H 1.09007 * 109.46674 * 239.99877 * 2 1 3 27 27 H 1.09001 * 109.46890 * 120.00528 * 2 1 3 28 28 H 1.08997 * 109.46856 * 60.00314 * 3 2 1 29 29 H 1.08994 * 109.47075 * 300.00491 * 3 2 1 30 30 H 1.07996 * 119.97270 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.94648 * 180.27439 * 7 6 5 32 32 H 1.08997 * 109.46935 * 134.72213 * 9 8 7 33 33 H 0.96703 * 113.99806 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.46931 * 42.07603 * 17 16 15 35 35 H 1.08999 * 109.47400 * 162.07339 * 17 16 15 36 36 H 1.09004 * 109.46881 * 55.55457 * 19 18 17 37 37 H 1.08994 * 109.47364 * 175.54897 * 19 18 17 38 38 H 1.08998 * 109.47207 * 295.56097 * 19 18 17 39 39 H 1.09010 * 109.47156 * 60.00068 * 20 18 17 40 40 H 1.08998 * 109.47405 * 180.02562 * 20 18 17 41 41 H 1.08996 * 109.47129 * 300.00490 * 20 18 17 42 42 H 1.09002 * 109.47432 * 64.99989 * 21 18 17 43 43 H 1.08998 * 109.47290 * 185.00314 * 21 18 17 44 44 H 1.08999 * 109.47505 * 305.00320 * 21 18 17 45 45 H 1.07990 * 120.05303 * 179.97438 * 22 15 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0861 2.6532 0.0012 6 6 3.3309 3.8173 0.0018 7 6 3.9578 5.0489 0.0083 8 6 5.3373 5.1244 0.0034 9 6 6.0176 6.4692 0.0051 10 8 6.5446 6.7380 -1.2956 11 14 4.7838 7.7887 0.4601 12 1 4.2361 7.5094 1.8119 13 1 5.4543 9.1137 0.4624 14 1 3.6776 7.7950 -0.5305 15 6 6.0970 3.9630 0.0029 16 8 7.4539 4.0379 0.0037 17 6 8.1714 2.8096 0.1399 18 14 8.1543 2.2749 1.9245 19 6 6.4137 1.8385 2.4253 20 6 9.2535 0.7859 2.1372 21 6 8.7783 3.6656 2.9954 22 6 5.4706 2.7264 0.0017 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 2.2524 3.7607 0.0013 31 1 3.3683 5.9539 0.0132 32 1 6.8295 6.4646 0.7323 33 1 6.9978 7.5891 -1.3682 34 1 7.6987 2.0428 -0.4738 35 1 9.2015 2.9524 -0.1867 36 1 6.0203 1.0799 1.7485 37 1 6.4151 1.4508 3.4440 38 1 5.7873 2.7292 2.3762 39 1 10.2719 1.0413 1.8442 40 1 9.2431 0.4728 3.1812 41 1 8.8884 -0.0277 1.5105 42 1 8.0863 4.5059 2.9396 43 1 8.8525 3.3240 4.0279 44 1 9.7614 3.9807 2.6456 45 1 6.0601 1.8215 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_26953_3095236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:01:12 Heat of formation + Delta-G solvation = -114.278241 kcal Electronic energy + Delta-G solvation = -23284.236439 eV Core-core repulsion = 20005.615429 eV Total energy + Delta-G solvation = -3278.621010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71783 -40.09784 -38.22221 -37.09809 -34.87538 -32.27891 -31.27426 -29.65066 -28.38621 -28.32330 -27.93631 -27.49291 -25.98757 -23.61607 -22.51865 -21.94682 -19.79960 -18.43829 -17.83284 -17.36279 -17.30203 -16.90018 -16.56959 -16.07122 -15.69259 -15.28700 -15.07582 -14.67893 -14.32856 -14.10681 -14.02920 -13.83794 -13.75352 -13.68728 -13.53811 -13.26261 -13.17953 -13.06561 -13.00940 -12.94355 -12.67294 -12.56583 -12.18123 -12.08205 -12.05411 -11.74959 -11.65692 -11.51816 -10.85611 -10.77990 -10.66517 -10.20625 -9.48192 -8.96256 0.21219 0.33376 1.17954 1.45861 1.50871 1.57235 1.78306 1.85646 1.89805 2.08064 2.49696 2.54175 2.61017 3.57681 3.69314 3.89013 3.91778 3.98095 4.05163 4.17741 4.22582 4.27390 4.35265 4.39650 4.51776 4.57809 4.65140 4.73403 4.77784 4.78247 4.78549 4.82152 4.82702 4.83359 4.89329 5.03139 5.09961 5.14673 5.26136 5.30362 5.32237 5.51435 5.53208 5.61874 5.63260 6.25746 6.42373 6.88401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.051 3.949 4 O -0.325 6.325 5 C 0.164 3.836 6 C -0.246 4.246 7 C -0.056 4.056 8 C -0.168 4.168 9 C -0.072 4.072 10 O -0.562 6.562 11 Si 0.976 3.024 12 H -0.254 1.254 13 H -0.253 1.253 14 H -0.261 1.261 15 C 0.177 3.823 16 O -0.289 6.289 17 C -0.270 4.270 18 Si 1.049 2.951 19 C -0.460 4.460 20 C -0.453 4.453 21 C -0.456 4.456 22 C -0.248 4.248 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.392 0.608 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 -0.778 2.002 2.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.024 4.024 4 O -0.239 6.239 5 C 0.117 3.883 6 C -0.265 4.265 7 C -0.074 4.074 8 C -0.169 4.169 9 C -0.181 4.181 10 O -0.371 6.371 11 Si 0.799 3.201 12 H -0.178 1.178 13 H -0.177 1.177 14 H -0.186 1.186 15 C 0.130 3.870 16 O -0.201 6.201 17 C -0.388 4.388 18 Si 1.242 2.758 19 C -0.567 4.567 20 C -0.561 4.561 21 C -0.563 4.563 22 C -0.267 4.267 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.098 0.902 33 H 0.242 0.758 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.406 -0.739 2.038 2.583 hybrid contribution 0.349 0.064 -0.239 0.427 sum -1.057 -0.674 1.799 2.193 Atomic orbital electron populations 1.21689 0.93099 1.03120 1.02687 1.21492 0.96933 0.94021 1.03466 1.23145 0.76859 0.99864 1.02494 1.86032 1.22996 1.26815 1.88046 1.18767 0.91672 0.84560 0.93257 1.21287 1.01229 0.91482 1.12505 1.20882 0.92803 0.98422 0.95266 1.18791 0.92806 0.93087 1.12197 1.24642 1.04574 1.00061 0.88868 1.86495 1.77350 1.43716 1.29512 0.85384 0.78136 0.76780 0.79824 1.17817 1.17732 1.18555 1.18540 0.83429 0.92357 0.92715 1.86078 1.14127 1.33090 1.86854 1.28625 0.99414 0.88788 1.21964 0.78934 0.66776 0.66650 0.63460 1.26616 1.19019 1.05100 1.05923 1.26100 1.10273 1.14351 1.05383 1.26158 1.06469 1.13613 1.10070 1.20631 0.93010 0.98142 1.14918 0.91238 0.91850 0.91955 0.91191 0.91049 0.90848 0.91078 0.83267 0.83993 0.90152 0.75821 0.90611 0.86072 0.91089 0.90908 0.92161 0.90424 0.90505 0.90731 0.91763 0.90743 0.90764 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 9.91 71.98 0.71 1.32 16 2 C -0.12 0.19 6.30 30.59 0.19 0.38 16 3 C 0.05 0.00 4.74 71.98 0.34 0.35 16 4 O -0.33 -1.84 10.14 -92.45 -0.94 -2.77 16 5 C 0.16 1.08 6.68 22.49 0.15 1.23 16 6 C -0.25 -1.17 9.04 22.39 0.20 -0.96 16 7 C -0.06 -0.31 8.65 22.24 0.19 -0.12 16 8 C -0.17 -1.24 5.31 -19.75 -0.10 -1.34 16 9 C -0.07 -0.28 2.37 71.24 0.17 -0.11 16 10 O -0.56 -2.84 12.86 -148.98 -1.92 -4.75 16 11 Si 0.98 0.92 25.48 68.60 1.75 2.67 16 12 H -0.25 -0.43 7.11 99.48 0.71 0.27 16 13 H -0.25 -0.07 7.11 99.48 0.71 0.63 16 14 H -0.26 -0.71 6.74 99.48 0.67 -0.04 16 15 C 0.18 1.36 5.76 22.49 0.13 1.49 16 16 O -0.29 -1.85 9.12 -92.31 -0.84 -2.69 16 17 C -0.27 -0.04 5.31 113.37 0.60 0.56 16 18 Si 1.05 -3.48 11.68 68.60 0.80 -2.67 16 19 C -0.46 -0.18 7.04 113.37 0.80 0.62 16 20 C -0.45 1.76 8.65 113.37 0.98 2.74 16 21 C -0.46 0.51 8.65 113.37 0.98 1.49 16 22 C -0.25 -1.60 5.58 22.46 0.13 -1.48 16 23 H 0.07 -0.31 8.14 -2.38 -0.02 -0.33 16 24 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 25 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.07 -0.05 8.14 -2.38 -0.02 -0.07 16 27 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.07 -0.14 7.66 -2.39 -0.02 -0.16 16 29 H 0.07 -0.10 7.66 -2.39 -0.02 -0.12 16 30 H 0.15 0.00 6.29 -2.91 -0.02 -0.02 16 31 H 0.14 0.29 4.87 -2.91 -0.01 0.27 16 32 H 0.08 0.14 7.82 -2.39 -0.02 0.12 16 33 H 0.39 -1.66 8.74 -74.06 -0.65 -2.31 16 34 H 0.08 -0.04 6.06 -2.39 -0.01 -0.05 16 35 H 0.12 -0.35 7.96 -2.39 -0.02 -0.36 16 36 H 0.07 0.07 6.50 -2.38 -0.02 0.06 16 37 H 0.07 -0.05 7.96 -2.39 -0.02 -0.06 16 38 H 0.06 0.20 6.55 -2.39 -0.02 0.19 16 39 H 0.08 -0.36 7.96 -2.38 -0.02 -0.38 16 40 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 42 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 43 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 44 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 45 H 0.15 0.52 4.24 -2.92 -0.01 0.51 16 Total: 0.00 -12.91 355.03 5.37 -7.54 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: 1.04 Total: -3.48 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.47 Total: 6.17 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -3.69 Total: -10.21 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.55 Total: -0.01 kcal Total: -12.91 5.37 -7.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_26953_3095236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.742 kcal (2) G-P(sol) polarization free energy of solvation -12.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds