Wall clock time and date at job start Mon Mar 8 2021 14:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34744 * 116.99945 * 2 1 4 4 O 1.21504 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.47465 * 120.00063 * 179.97438 * 3 2 1 6 6 C 1.39773 * 120.09124 * 179.97438 * 5 3 2 7 7 C 1.37706 * 119.90481 * 179.78734 * 6 5 3 8 8 C 1.50694 * 119.95518 * 180.24972 * 7 6 5 9 9 O 1.42898 * 109.47552 * 255.23740 * 8 7 6 10 10 Si 1.86302 * 109.47143 * 15.24079 * 8 7 6 11 11 C 1.39000 * 120.09213 * 0.48780 * 7 6 5 12 12 O 1.35692 * 119.90817 * 179.76127 * 11 7 6 13 13 C 1.42903 * 117.00182 * 179.72139 * 12 11 7 14 14 C 1.52990 * 109.47168 * 179.97438 * 13 12 11 15 15 H 1.09000 * 112.90908 * 43.75570 * 14 13 12 16 16 C 1.53786 * 113.61464 * 175.00198 * 14 13 12 17 17 C 1.53781 * 87.17350 * 140.02626 * 16 14 13 18 18 H 1.08999 * 113.61567 * 89.07405 * 17 16 14 19 19 O 1.42897 * 113.61404 * 219.97824 * 17 16 14 20 20 C 1.42899 * 114.00083 * 210.00015 * 19 17 16 21 21 C 1.52995 * 109.47121 * 59.99730 * 20 19 17 22 22 C 1.52995 * 109.47392 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47054 * 300.00199 * 20 19 17 24 24 C 1.53781 * 87.08070 * 334.52830 * 17 16 14 25 25 C 1.39043 * 120.18308 * 359.48659 * 11 7 6 26 26 C 1.37657 * 120.09460 * 0.28031 * 25 11 7 27 27 H 1.09003 * 109.47118 * 60.00266 * 1 2 3 28 28 H 1.09006 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47333 * 299.99934 * 1 2 3 30 30 H 1.08001 * 120.05072 * 0.04524 * 6 5 3 31 31 H 1.09005 * 109.47275 * 135.23445 * 8 7 6 32 32 H 0.96696 * 114.00228 * 180.02562 * 9 8 7 33 33 H 1.48498 * 109.99863 * 178.68148 * 10 8 7 34 34 H 1.48496 * 109.99552 * 299.99541 * 10 8 7 35 35 H 1.09007 * 109.46427 * 60.00481 * 13 12 11 36 36 H 1.08994 * 109.47177 * 300.00789 * 13 12 11 37 37 H 1.09002 * 113.61357 * 25.43543 * 16 14 13 38 38 H 1.09002 * 113.61608 * 254.61705 * 16 14 13 39 39 H 1.09005 * 109.46889 * 60.00217 * 21 20 19 40 40 H 1.09006 * 109.47235 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47816 * 300.00195 * 21 20 19 42 42 H 1.08992 * 109.47372 * 59.99697 * 22 20 19 43 43 H 1.08998 * 109.47323 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.46777 * 299.99880 * 22 20 19 45 45 H 1.09002 * 109.47440 * 59.99753 * 23 20 19 46 46 H 1.09000 * 109.47397 * 180.02562 * 23 20 19 47 47 H 1.09000 * 109.47214 * 299.99695 * 23 20 19 48 48 H 1.09005 * 113.61471 * 139.98321 * 24 17 16 49 49 H 1.08996 * 113.61178 * 270.79663 * 24 17 16 50 50 H 1.08003 * 119.94768 * 180.25351 * 25 11 7 51 51 H 1.07996 * 120.04548 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5363 1.2778 0.0006 6 6 4.1729 2.5222 0.0000 7 6 5.5482 2.5898 0.0050 8 6 6.2356 3.9308 0.0101 9 8 6.7630 4.2008 -1.2903 10 14 5.0092 5.2556 0.4702 11 6 6.3034 1.4229 0.0003 12 8 7.6585 1.4939 0.0003 13 6 8.3730 0.2563 0.0016 14 6 9.8772 0.5359 0.0007 15 1 10.1620 1.3273 0.6941 16 6 10.7394 -0.7314 0.1247 17 6 11.6868 -0.0958 -0.9065 18 1 12.4654 0.5232 -0.4607 19 8 12.1957 -1.0250 -1.8653 20 6 13.4950 -0.6959 -2.3608 21 6 14.4892 -0.6564 -1.1985 22 6 13.9370 -1.7527 -3.3749 23 6 13.4498 0.6744 -3.0399 24 6 10.4746 0.7061 -1.4089 25 6 5.6742 0.1830 0.0013 26 6 4.2997 0.1064 0.0012 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.5869 3.4294 -0.0001 31 1 7.0482 3.9199 0.7367 32 1 7.2207 5.0497 -1.3606 33 1 5.6820 6.5788 0.5098 34 1 3.8964 5.2808 -0.5127 35 1 8.1098 -0.3160 -0.8880 36 1 8.1096 -0.3144 0.8919 37 1 10.2442 -1.6334 -0.2351 38 1 11.1885 -0.8594 1.1096 39 1 14.5214 -1.6326 -0.7146 40 1 15.4804 -0.4058 -1.5765 41 1 14.1742 0.0968 -0.4763 42 1 13.2287 -1.7805 -4.2029 43 1 14.9282 -1.5019 -3.7525 44 1 13.9691 -2.7292 -2.8914 45 1 13.1348 1.4277 -2.3177 46 1 14.4408 0.9253 -3.4183 47 1 12.7416 0.6464 -3.8680 48 1 10.7095 1.7401 -1.6619 49 1 9.9079 0.1979 -2.1890 50 1 6.2647 -0.7213 0.0018 51 1 3.8118 -0.8570 0.0016 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_2787264_14598384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:53:23 Heat of formation + Delta-G solvation = -146.225461 kcal Electronic energy + Delta-G solvation = -31327.867061 eV Core-core repulsion = 26967.637916 eV Total energy + Delta-G solvation = -4360.229146 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.186 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.82512 -41.16539 -40.67655 -38.98473 -37.97435 -37.63081 -37.18356 -33.95036 -33.13557 -31.74059 -29.70548 -28.59859 -28.43438 -28.28969 -26.74738 -26.65423 -24.94678 -24.03986 -22.61149 -21.61260 -20.86356 -20.67050 -19.27011 -18.65796 -18.47522 -18.11026 -17.74418 -17.24782 -17.10903 -17.01648 -16.60183 -16.09911 -15.93534 -15.73095 -15.41549 -15.20415 -14.85249 -14.63609 -14.53034 -14.34023 -14.29265 -13.91548 -13.67488 -13.60716 -13.48661 -13.36669 -13.35354 -13.09080 -13.03399 -12.91979 -12.83162 -12.70438 -12.49372 -12.29527 -12.01759 -11.81961 -11.76080 -11.72765 -11.70530 -11.45793 -11.41728 -11.24667 -10.40826 -10.38723 -10.17112 -9.36687 -4.92735 -0.28103 0.11945 1.29477 1.54894 1.61783 1.74811 1.95095 1.99389 2.60017 2.69169 3.32854 3.36880 3.47971 3.63082 3.66208 3.69848 3.74394 3.80195 3.84653 3.91889 4.00324 4.04321 4.05760 4.08420 4.15297 4.22047 4.25464 4.31534 4.32562 4.44264 4.50854 4.52258 4.60185 4.62938 4.68920 4.71663 4.73237 4.77258 4.77885 4.84699 4.87722 4.95634 5.00480 5.05783 5.09475 5.10293 5.17266 5.24820 5.26786 5.32042 5.44363 5.48258 6.21823 6.37427 6.51062 6.82549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.513 3.487 4 O -0.507 6.507 5 C -0.167 4.167 6 C -0.013 4.013 7 C -0.120 4.120 8 C -0.059 4.059 9 O -0.531 6.531 10 Si 0.676 3.324 11 C 0.196 3.804 12 O -0.295 6.295 13 C 0.067 3.933 14 C -0.109 4.109 15 H 0.104 0.896 16 C -0.126 4.126 17 C 0.062 3.938 18 H 0.092 0.908 19 O -0.361 6.361 20 C 0.105 3.895 21 C -0.179 4.179 22 C -0.139 4.139 23 C -0.176 4.176 24 C -0.147 4.147 25 C -0.226 4.226 26 C -0.010 4.010 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.148 0.852 31 H 0.079 0.921 32 H 0.378 0.622 33 H -0.257 1.257 34 H -0.251 1.251 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.141 0.859 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 -2.472 2.880 5.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.396 6.396 5 C -0.168 4.168 6 C -0.030 4.030 7 C -0.121 4.121 8 C -0.168 4.168 9 O -0.338 6.338 10 Si 0.577 3.423 11 C 0.149 3.851 12 O -0.207 6.207 13 C -0.008 4.008 14 C -0.127 4.127 15 H 0.123 0.877 16 C -0.164 4.164 17 C 0.004 3.996 18 H 0.110 0.890 19 O -0.281 6.281 20 C 0.066 3.934 21 C -0.236 4.236 22 C -0.196 4.196 23 C -0.234 4.234 24 C -0.184 4.184 25 C -0.244 4.244 26 C -0.029 4.029 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.097 0.903 32 H 0.226 0.774 33 H -0.182 1.182 34 H -0.175 1.175 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.109 0.891 50 H 0.159 0.841 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.683 -2.028 2.444 4.157 hybrid contribution 0.733 0.396 -0.719 1.101 sum 3.416 -1.631 1.725 4.160 Atomic orbital electron populations 1.23324 0.75518 1.03997 1.02860 1.86525 1.23900 1.32473 1.84380 1.20993 0.88872 0.81587 0.72754 1.90863 1.66747 1.35971 1.45994 1.18816 0.89322 0.94351 1.14311 1.21023 0.92714 0.97592 0.91717 1.18435 0.91788 0.92566 1.09295 1.24519 1.04005 1.00049 0.88270 1.86610 1.75650 1.41980 1.29556 0.95090 0.79741 0.77303 0.90208 1.19080 0.82869 0.93089 0.90075 1.86105 1.14761 1.33232 1.86562 1.22957 0.91141 0.84669 1.02024 1.22347 0.91422 0.99665 0.99280 0.87736 1.23227 0.96367 0.97414 0.99382 1.23562 0.94104 0.91724 0.90233 0.89004 1.88033 1.32338 1.49131 1.58555 1.21538 0.83202 0.95057 0.93610 1.22470 0.99747 1.02774 0.98646 1.21769 1.01339 0.98300 0.98223 1.22471 1.02827 0.96592 1.01499 1.23657 0.97315 1.01027 0.96447 1.21291 0.95663 0.96861 1.10600 1.21297 0.92866 0.98224 0.90470 0.91699 0.87772 0.91584 0.83444 0.90308 0.77397 1.18161 1.17507 0.91210 0.91177 0.88764 0.90349 0.91593 0.91342 0.92233 0.91751 0.91052 0.91756 0.92295 0.91526 0.91666 0.90930 0.89092 0.84124 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.01 10.57 101.05 1.07 1.06 16 2 O -0.36 -0.77 9.81 -40.61 -0.40 -1.16 16 3 C 0.51 1.95 7.89 34.49 0.27 2.23 16 4 O -0.51 -3.21 16.13 -19.27 -0.31 -3.52 16 5 C -0.17 -0.43 5.87 -104.98 -0.62 -1.05 16 6 C -0.01 -0.03 8.20 -39.20 -0.32 -0.36 16 7 C -0.12 -0.28 5.30 -104.54 -0.55 -0.83 16 8 C -0.06 -0.07 2.36 36.00 0.09 0.02 16 9 O -0.53 -1.20 12.86 -35.23 -0.45 -1.65 16 10 Si 0.68 0.32 30.20 -169.99 -5.13 -4.81 16 11 C 0.20 0.34 6.67 -39.00 -0.26 0.08 16 12 O -0.29 -0.39 9.45 -18.78 -0.18 -0.57 16 13 C 0.07 -0.08 4.58 37.15 0.17 0.09 16 14 C -0.11 0.16 4.02 -89.67 -0.36 -0.20 16 15 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 16 C -0.13 0.20 7.46 -25.92 -0.19 0.01 16 17 C 0.06 -0.03 2.82 -25.92 -0.07 -0.11 16 18 H 0.09 -0.12 5.55 -51.93 -0.29 -0.41 16 19 O -0.36 -0.50 10.00 -35.23 -0.35 -0.85 16 20 C 0.10 0.00 1.11 -90.62 -0.10 -0.10 16 21 C -0.18 0.17 8.38 37.16 0.31 0.48 16 22 C -0.14 0.06 8.84 37.15 0.33 0.39 16 23 C -0.18 0.10 8.38 37.16 0.31 0.41 16 24 C -0.15 0.06 7.47 -25.78 -0.19 -0.13 16 25 C -0.23 -0.05 9.01 -39.50 -0.36 -0.41 16 26 C -0.01 -0.01 9.61 -39.20 -0.38 -0.38 16 27 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.15 0.42 4.47 -52.49 -0.23 0.19 16 31 H 0.08 -0.01 7.82 -51.93 -0.41 -0.42 16 32 H 0.38 -0.65 8.74 45.56 0.40 -0.25 16 33 H -0.26 -0.50 7.11 56.52 0.40 -0.10 16 34 H -0.25 -0.95 6.74 56.52 0.38 -0.57 16 35 H 0.07 -0.10 7.36 -51.93 -0.38 -0.48 16 36 H 0.07 -0.18 7.65 -51.93 -0.40 -0.57 16 37 H 0.09 -0.13 8.10 -51.93 -0.42 -0.55 16 38 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 39 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 40 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 41 H 0.06 -0.08 6.25 -51.93 -0.32 -0.40 16 42 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 44 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 45 H 0.06 -0.04 7.02 -51.93 -0.36 -0.41 16 46 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 47 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 48 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 49 H 0.09 0.05 7.91 -51.93 -0.41 -0.36 16 50 H 0.14 -0.29 6.28 -52.48 -0.33 -0.62 16 51 H 0.15 -0.18 7.60 -52.49 -0.40 -0.58 16 LS Contribution 411.42 15.07 6.20 6.20 Total: 0.00 -7.45 411.42 -9.76 -17.21 By element: Atomic # 1 Polarization: -3.77 SS G_CDS: -8.27 Total: -12.04 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.86 Total: 1.20 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -1.69 Total: -7.76 kcal Atomic # 14 Polarization: 0.32 SS G_CDS: -5.13 Total: -4.81 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -7.45 -9.76 -17.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2787264_14598384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.017 kcal (2) G-P(sol) polarization free energy of solvation -7.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds