Wall clock time and date at job start Mon Mar 8 2021 14:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34744 * 116.99945 * 2 1 4 4 O 1.21504 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.47465 * 120.00063 * 179.97438 * 3 2 1 6 6 C 1.39773 * 120.09124 * 179.97438 * 5 3 2 7 7 C 1.37706 * 119.90481 * 179.78734 * 6 5 3 8 8 C 1.50694 * 119.95518 * 180.24972 * 7 6 5 9 9 O 1.42898 * 109.47552 * 255.23740 * 8 7 6 10 10 Si 1.86302 * 109.47143 * 15.24079 * 8 7 6 11 11 C 1.39000 * 120.09213 * 0.48780 * 7 6 5 12 12 O 1.35692 * 119.90817 * 179.76127 * 11 7 6 13 13 C 1.42903 * 117.00182 * 179.72139 * 12 11 7 14 14 C 1.52990 * 109.47168 * 179.97438 * 13 12 11 15 15 H 1.09000 * 112.90908 * 43.75570 * 14 13 12 16 16 C 1.53786 * 113.61464 * 175.00198 * 14 13 12 17 17 C 1.53781 * 87.17350 * 140.02626 * 16 14 13 18 18 H 1.08999 * 113.61567 * 89.07405 * 17 16 14 19 19 O 1.42897 * 113.61404 * 219.97824 * 17 16 14 20 20 C 1.42899 * 114.00083 * 210.00015 * 19 17 16 21 21 C 1.52995 * 109.47121 * 59.99730 * 20 19 17 22 22 C 1.52995 * 109.47392 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47054 * 300.00199 * 20 19 17 24 24 C 1.53781 * 87.08070 * 334.52830 * 17 16 14 25 25 C 1.39043 * 120.18308 * 359.48659 * 11 7 6 26 26 C 1.37657 * 120.09460 * 0.28031 * 25 11 7 27 27 H 1.09003 * 109.47118 * 60.00266 * 1 2 3 28 28 H 1.09006 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47333 * 299.99934 * 1 2 3 30 30 H 1.08001 * 120.05072 * 0.04524 * 6 5 3 31 31 H 1.09005 * 109.47275 * 135.23445 * 8 7 6 32 32 H 0.96696 * 114.00228 * 180.02562 * 9 8 7 33 33 H 1.48498 * 109.99863 * 178.68148 * 10 8 7 34 34 H 1.48496 * 109.99552 * 299.99541 * 10 8 7 35 35 H 1.09007 * 109.46427 * 60.00481 * 13 12 11 36 36 H 1.08994 * 109.47177 * 300.00789 * 13 12 11 37 37 H 1.09002 * 113.61357 * 25.43543 * 16 14 13 38 38 H 1.09002 * 113.61608 * 254.61705 * 16 14 13 39 39 H 1.09005 * 109.46889 * 60.00217 * 21 20 19 40 40 H 1.09006 * 109.47235 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47816 * 300.00195 * 21 20 19 42 42 H 1.08992 * 109.47372 * 59.99697 * 22 20 19 43 43 H 1.08998 * 109.47323 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.46777 * 299.99880 * 22 20 19 45 45 H 1.09002 * 109.47440 * 59.99753 * 23 20 19 46 46 H 1.09000 * 109.47397 * 180.02562 * 23 20 19 47 47 H 1.09000 * 109.47214 * 299.99695 * 23 20 19 48 48 H 1.09005 * 113.61471 * 139.98321 * 24 17 16 49 49 H 1.08996 * 113.61178 * 270.79663 * 24 17 16 50 50 H 1.08003 * 119.94768 * 180.25351 * 25 11 7 51 51 H 1.07996 * 120.04548 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5363 1.2778 0.0006 6 6 4.1729 2.5222 0.0000 7 6 5.5482 2.5898 0.0050 8 6 6.2356 3.9308 0.0101 9 8 6.7630 4.2008 -1.2903 10 14 5.0092 5.2556 0.4702 11 6 6.3034 1.4229 0.0003 12 8 7.6585 1.4939 0.0003 13 6 8.3730 0.2563 0.0016 14 6 9.8772 0.5359 0.0007 15 1 10.1620 1.3273 0.6941 16 6 10.7394 -0.7314 0.1247 17 6 11.6868 -0.0958 -0.9065 18 1 12.4654 0.5232 -0.4607 19 8 12.1957 -1.0250 -1.8653 20 6 13.4950 -0.6959 -2.3608 21 6 14.4892 -0.6564 -1.1985 22 6 13.9370 -1.7527 -3.3749 23 6 13.4498 0.6744 -3.0399 24 6 10.4746 0.7061 -1.4089 25 6 5.6742 0.1830 0.0013 26 6 4.2997 0.1064 0.0012 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.5869 3.4294 -0.0001 31 1 7.0482 3.9199 0.7367 32 1 7.2207 5.0497 -1.3606 33 1 5.6820 6.5788 0.5098 34 1 3.8964 5.2808 -0.5127 35 1 8.1098 -0.3160 -0.8880 36 1 8.1096 -0.3144 0.8919 37 1 10.2442 -1.6334 -0.2351 38 1 11.1885 -0.8594 1.1096 39 1 14.5214 -1.6326 -0.7146 40 1 15.4804 -0.4058 -1.5765 41 1 14.1742 0.0968 -0.4763 42 1 13.2287 -1.7805 -4.2029 43 1 14.9282 -1.5019 -3.7525 44 1 13.9691 -2.7292 -2.8914 45 1 13.1348 1.4277 -2.3177 46 1 14.4408 0.9253 -3.4183 47 1 12.7416 0.6464 -3.8680 48 1 10.7095 1.7401 -1.6619 49 1 9.9079 0.1979 -2.1890 50 1 6.2647 -0.7213 0.0018 51 1 3.8118 -0.8570 0.0016 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2787264_14598384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:53:21 Heat of formation + Delta-G solvation = -141.387846 kcal Electronic energy + Delta-G solvation = -31327.657287 eV Core-core repulsion = 26967.637916 eV Total energy + Delta-G solvation = -4360.019371 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.186 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.93177 -41.25254 -40.69903 -39.00622 -37.96724 -37.75429 -37.40519 -33.92694 -33.21730 -31.83071 -29.66214 -28.61731 -28.35822 -28.24717 -26.80033 -26.58885 -25.02862 -24.05320 -22.63986 -21.76723 -20.82114 -20.58232 -19.30293 -18.82081 -18.59181 -18.23283 -17.74423 -17.43857 -17.16699 -16.98473 -16.58140 -16.10900 -15.96151 -15.70467 -15.47745 -15.30441 -14.89340 -14.61465 -14.55697 -14.37946 -14.35706 -14.03787 -13.71162 -13.67756 -13.41726 -13.40251 -13.29380 -13.05726 -12.99973 -12.96411 -12.77712 -12.65838 -12.48713 -12.23486 -12.01253 -11.96600 -11.85873 -11.79874 -11.72452 -11.66548 -11.34265 -11.16765 -10.49953 -10.35118 -10.24866 -9.45544 -5.00517 -0.42547 0.04260 1.21349 1.35407 1.50278 1.62283 1.86964 1.96280 2.49203 2.75502 3.29927 3.46973 3.56191 3.60741 3.62035 3.71023 3.78266 3.82897 3.90870 3.98530 3.98844 4.02802 4.09395 4.13137 4.20348 4.27429 4.28743 4.31789 4.43231 4.46834 4.54422 4.61610 4.65626 4.67580 4.74068 4.77796 4.79827 4.80674 4.85523 4.91354 4.93560 4.94230 5.03506 5.05299 5.09244 5.12790 5.17781 5.26384 5.31644 5.32835 5.37737 5.44384 6.21205 6.42563 6.57964 6.60008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.512 3.488 4 O -0.543 6.543 5 C -0.183 4.183 6 C -0.024 4.024 7 C -0.134 4.134 8 C -0.061 4.061 9 O -0.552 6.552 10 Si 0.743 3.257 11 C 0.192 3.808 12 O -0.305 6.305 13 C 0.061 3.939 14 C -0.100 4.100 15 H 0.109 0.891 16 C -0.120 4.120 17 C 0.057 3.943 18 H 0.099 0.901 19 O -0.381 6.381 20 C 0.099 3.901 21 C -0.176 4.176 22 C -0.140 4.140 23 C -0.174 4.174 24 C -0.150 4.150 25 C -0.220 4.220 26 C -0.002 4.002 27 H 0.059 0.941 28 H 0.135 0.865 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.393 0.607 33 H -0.272 1.272 34 H -0.303 1.303 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.168 0.832 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -3.733 3.745 7.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.360 3.640 4 O -0.435 6.435 5 C -0.185 4.185 6 C -0.042 4.042 7 C -0.135 4.135 8 C -0.171 4.171 9 O -0.362 6.362 10 Si 0.649 3.351 11 C 0.144 3.856 12 O -0.217 6.217 13 C -0.013 4.013 14 C -0.119 4.119 15 H 0.127 0.873 16 C -0.157 4.157 17 C 0.000 4.000 18 H 0.117 0.883 19 O -0.301 6.301 20 C 0.060 3.940 21 C -0.234 4.234 22 C -0.197 4.197 23 C -0.231 4.231 24 C -0.187 4.187 25 C -0.238 4.238 26 C -0.021 4.021 27 H 0.078 0.922 28 H 0.153 0.847 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.114 0.886 32 H 0.243 0.757 33 H -0.198 1.198 34 H -0.231 1.231 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.185 0.815 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.848 -3.304 3.325 6.065 hybrid contribution 0.374 0.763 -1.056 1.355 sum 4.222 -2.542 2.269 5.425 Atomic orbital electron populations 1.23588 0.74282 1.05932 1.02593 1.86519 1.25156 1.31477 1.83885 1.21278 0.89397 0.81535 0.71817 1.90839 1.67568 1.37119 1.47947 1.18897 0.88870 0.95113 1.15599 1.21003 0.93092 0.97515 0.92606 1.18573 0.91677 0.93521 1.09740 1.24609 1.04520 0.99710 0.88229 1.86564 1.76006 1.43322 1.30279 0.94298 0.76454 0.75843 0.88555 1.19214 0.83201 0.93391 0.89821 1.86090 1.14546 1.34644 1.86386 1.23142 0.90941 0.84089 1.03104 1.22296 0.91316 0.99866 0.98388 0.87275 1.23190 0.95862 0.97109 0.99558 1.23691 0.94280 0.91787 0.90255 0.88304 1.88008 1.33039 1.49907 1.59128 1.21656 0.83064 0.95229 0.94052 1.22443 0.99871 1.02697 0.98344 1.21793 1.01810 0.98155 0.97936 1.22445 1.03045 0.96470 1.01161 1.23634 0.97640 1.00575 0.96896 1.21570 0.95615 0.97298 1.09314 1.21514 0.93019 0.98265 0.89256 0.92212 0.84699 0.91710 0.84572 0.88613 0.75650 1.19828 1.23145 0.90931 0.89208 0.88928 0.89177 0.92013 0.90542 0.91772 0.92526 0.89843 0.92133 0.92135 0.90653 0.92665 0.91457 0.90316 0.81482 0.81668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.57 113.37 1.20 1.19 16 2 O -0.35 -1.58 9.81 -56.54 -0.55 -2.14 16 3 C 0.51 4.55 7.89 70.25 0.55 5.11 16 4 O -0.54 -8.09 16.13 19.82 0.32 -7.77 16 5 C -0.18 -1.10 5.87 -20.09 -0.12 -1.22 16 6 C -0.02 -0.17 8.20 22.52 0.18 0.01 16 7 C -0.13 -0.70 5.30 -19.81 -0.10 -0.80 16 8 C -0.06 -0.17 2.36 71.23 0.17 0.00 16 9 O -0.55 -2.81 12.86 -148.98 -1.92 -4.73 16 10 Si 0.74 1.75 30.20 68.60 2.07 3.82 16 11 C 0.19 0.56 6.67 22.65 0.15 0.71 16 12 O -0.30 -0.54 9.45 -90.11 -0.85 -1.39 16 13 C 0.06 -0.23 4.58 71.98 0.33 0.10 16 14 C -0.10 0.39 4.02 -10.18 -0.04 0.35 16 15 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 16 C -0.12 0.51 7.46 31.12 0.23 0.75 16 17 C 0.06 -0.08 2.82 31.12 0.09 0.01 16 18 H 0.10 -0.32 5.55 -2.39 -0.01 -0.33 16 19 O -0.38 -1.08 10.00 -148.98 -1.49 -2.57 16 20 C 0.10 -0.01 1.11 -10.80 -0.01 -0.02 16 21 C -0.18 0.44 8.38 71.98 0.60 1.04 16 22 C -0.14 0.09 8.84 71.98 0.64 0.73 16 23 C -0.17 0.19 8.38 71.98 0.60 0.80 16 24 C -0.15 0.13 7.47 31.21 0.23 0.36 16 25 C -0.22 0.19 9.01 22.33 0.20 0.39 16 26 C 0.00 0.00 9.61 22.51 0.22 0.22 16 27 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 29 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.14 1.17 4.47 -2.91 -0.01 1.16 16 31 H 0.10 -0.08 7.82 -2.38 -0.02 -0.09 16 32 H 0.39 -1.20 8.74 -74.06 -0.65 -1.85 16 33 H -0.27 -1.26 7.11 99.48 0.71 -0.55 16 34 H -0.30 -3.34 6.74 99.48 0.67 -2.67 16 35 H 0.07 -0.29 7.36 -2.38 -0.02 -0.31 16 36 H 0.09 -0.67 7.65 -2.39 -0.02 -0.68 16 37 H 0.09 -0.34 8.10 -2.39 -0.02 -0.36 16 38 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.08 -0.32 8.14 -2.38 -0.02 -0.34 16 41 H 0.06 -0.22 6.25 -2.39 -0.01 -0.24 16 42 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 45 H 0.06 -0.09 7.02 -2.39 -0.02 -0.11 16 46 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 49 H 0.08 0.13 7.91 -2.39 -0.02 0.11 16 50 H 0.17 -1.11 6.28 -2.91 -0.02 -1.13 16 51 H 0.17 -0.68 7.60 -2.91 -0.02 -0.70 16 Total: 0.00 -18.83 411.42 2.99 -15.84 By element: Atomic # 1 Polarization: -11.08 SS G_CDS: 0.29 Total: -10.79 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.12 Total: 9.73 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -4.49 Total: -18.60 kcal Atomic # 14 Polarization: 1.75 SS G_CDS: 2.07 Total: 3.82 kcal Total: -18.83 2.99 -15.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2787264_14598384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.546 kcal (2) G-P(sol) polarization free energy of solvation -18.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds