Wall clock time and date at job start Mon Mar 8 2021 17:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.53000 * 109.47024 * 240.00183 * 2 1 3 5 5 Si 1.86299 * 109.47473 * 120.00189 * 2 1 3 6 6 C 1.86305 * 109.46999 * 299.99889 * 5 2 1 7 7 C 1.86301 * 109.47445 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.46989 * 59.99555 * 5 2 1 9 9 C 1.42907 * 113.99712 * 180.02562 * 8 5 2 10 10 C 1.52992 * 109.46778 * 180.02562 * 9 8 5 11 11 O 1.42899 * 109.47542 * 65.00420 * 10 9 8 12 12 C 1.35894 * 117.00434 * 179.97438 * 11 10 9 13 13 C 1.38709 * 120.05744 * 359.97438 * 12 11 10 14 14 C 1.38159 * 119.94698 * 180.02562 * 13 12 11 15 15 C 1.38241 * 120.05581 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.94735 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.47147 * 245.00352 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 4.99994 * 16 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 20 20 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 21 21 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 22 22 C 1.38293 * 120.11270 * 0.27563 * 15 14 13 23 23 C 1.38126 * 120.05159 * 359.45046 * 22 15 14 24 24 N 1.48002 * 120.02520 * 180.29946 * 23 22 15 25 25 O 1.21798 * 120.00044 * 0.24677 * 24 23 22 26 26 O 1.21801 * 119.99648 * 180.25377 * 24 23 22 27 27 H 1.09000 * 109.47392 * 299.99785 * 1 2 3 28 28 H 1.08996 * 109.47243 * 60.00075 * 1 2 3 29 29 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47185 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46784 * 300.00329 * 3 2 1 32 32 H 1.08997 * 109.47417 * 59.99932 * 3 2 1 33 33 H 1.09000 * 109.46926 * 299.99917 * 4 2 1 34 34 H 1.08996 * 109.47321 * 59.99790 * 4 2 1 35 35 H 1.09004 * 109.47420 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47329 * 179.97438 * 6 5 2 37 37 H 1.09001 * 109.46939 * 300.00407 * 6 5 2 38 38 H 1.08998 * 109.46948 * 59.99679 * 6 5 2 39 39 H 1.08993 * 109.46905 * 300.00251 * 7 5 2 40 40 H 1.09000 * 109.47105 * 59.99817 * 7 5 2 41 41 H 1.08996 * 109.47215 * 179.97438 * 7 5 2 42 42 H 1.09000 * 109.47005 * 60.00234 * 9 8 5 43 43 H 1.09000 * 109.46979 * 300.00517 * 9 8 5 44 44 H 1.08998 * 109.47556 * 304.99853 * 10 9 8 45 45 H 1.09005 * 109.46806 * 185.00432 * 10 9 8 46 46 H 1.08008 * 120.02343 * 359.97438 * 13 12 11 47 47 H 1.08008 * 119.97393 * 179.97438 * 14 13 12 48 48 H 1.09000 * 109.47318 * 124.99465 * 16 15 14 49 49 H 0.96700 * 113.99916 * 179.97438 * 17 16 15 50 50 H 1.08002 * 119.97160 * 179.70751 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0141 -0.8789 1.5207 8 8 1.6073 -2.4160 1.5211 9 6 2.0286 -3.1814 2.6519 10 6 1.4638 -4.5994 2.5470 11 8 2.0330 -5.2562 1.4127 12 6 1.6345 -6.5335 1.1750 13 6 0.7150 -7.1423 2.0163 14 6 0.3118 -8.4412 1.7728 15 6 0.8237 -9.1338 0.6914 16 6 0.3826 -10.5507 0.4284 17 8 1.4956 -11.4330 0.5857 18 14 -0.9562 -11.0186 1.6364 19 1 -1.3913 -12.4145 1.3769 20 1 -0.4322 -10.9123 3.0219 21 1 -2.1129 -10.1017 1.4730 22 6 1.7445 -8.5309 -0.1459 23 6 2.1464 -7.2306 0.0900 24 7 3.1269 -6.5837 -0.8103 25 8 3.5762 -7.1963 -1.7623 26 8 3.4845 -5.4386 -0.5992 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2496 36 1 1.8931 -0.5141 3.9322 37 1 1.8934 1.0277 3.0422 38 1 0.4401 0.0000 3.0423 39 1 4.3769 -1.3929 0.6307 40 1 4.3778 0.1486 1.5204 41 1 4.3774 -1.3924 2.4108 42 1 1.6638 -2.7113 3.5652 43 1 3.1175 -3.2252 2.6758 44 1 0.3807 -4.5517 2.4336 45 1 1.7101 -5.1564 3.4510 46 1 0.3151 -6.6017 2.8615 47 1 -0.4038 -8.9158 2.4279 48 1 -0.0021 -10.6287 -0.5884 49 1 1.2844 -12.3639 0.4315 50 1 2.1464 -9.0757 -0.9873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29190_10264010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:28:54 Heat of formation + Delta-G solvation = -137.107317 kcal Electronic energy + Delta-G solvation = -30862.329793 eV Core-core repulsion = 26596.164785 eV Total energy + Delta-G solvation = -4266.165008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.166 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.25815 -41.52082 -39.63230 -37.91206 -37.56443 -37.23512 -36.82229 -33.49887 -32.33524 -30.75102 -29.31035 -29.04494 -27.83275 -27.79150 -27.37219 -26.60993 -24.85557 -23.14419 -22.46641 -20.41525 -20.35396 -19.76809 -19.13032 -18.66110 -18.47471 -18.06378 -17.64024 -16.71834 -16.51175 -16.07774 -16.01682 -15.72502 -15.60163 -15.41313 -14.84998 -14.75469 -14.67284 -14.37184 -14.00459 -13.96092 -13.68840 -13.51310 -13.35296 -13.18519 -13.14964 -12.95656 -12.92318 -12.73989 -12.66654 -12.61024 -12.40718 -12.25997 -12.21442 -12.10621 -11.96490 -11.84617 -11.76716 -11.69113 -11.50025 -11.26571 -10.81850 -10.39368 -10.29060 -10.04281 -9.69685 -1.25496 -0.19698 0.19847 0.37875 1.13630 1.47270 1.54355 1.54793 1.73978 1.80353 1.91532 2.05012 2.17012 2.49663 3.11473 3.25812 3.40077 3.62193 3.68481 3.89674 3.96157 4.07972 4.12629 4.13206 4.23731 4.25553 4.35687 4.41266 4.46932 4.55333 4.63284 4.64794 4.76415 4.79557 4.80720 4.81745 4.83267 4.84315 4.85794 4.99895 5.08944 5.09321 5.09750 5.20229 5.26599 5.34007 5.41011 5.44066 5.49903 5.61704 5.67482 5.95972 6.50918 6.78093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.386 4.386 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.318 2.682 6 C -0.510 4.510 7 C -0.523 4.523 8 O -0.638 6.638 9 C 0.072 3.928 10 C 0.034 3.966 11 O -0.292 6.292 12 C 0.197 3.803 13 C -0.197 4.197 14 C -0.023 4.023 15 C -0.119 4.119 16 C -0.087 4.087 17 O -0.565 6.565 18 Si 0.981 3.019 19 H -0.256 1.256 20 H -0.254 1.254 21 H -0.246 1.246 22 C 0.000 4.000 23 C -0.108 4.108 24 N 0.038 4.962 25 O -0.209 6.209 26 O -0.160 6.160 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.116 0.884 46 H 0.194 0.806 47 H 0.168 0.832 48 H 0.098 0.902 49 H 0.402 0.598 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -2.583 8.023 10.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.428 4.428 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.448 2.552 6 C -0.612 4.612 7 C -0.623 4.623 8 O -0.598 6.598 9 C -0.003 4.003 10 C -0.040 4.040 11 O -0.203 6.203 12 C 0.147 3.853 13 C -0.215 4.215 14 C -0.041 4.041 15 C -0.121 4.121 16 C -0.196 4.196 17 O -0.375 6.375 18 Si 0.802 3.198 19 H -0.180 1.180 20 H -0.178 1.178 21 H -0.169 1.169 22 C -0.019 4.019 23 C -0.193 4.193 24 N 0.550 4.450 25 O -0.414 6.414 26 O -0.378 6.378 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.133 0.867 46 H 0.211 0.789 47 H 0.185 0.815 48 H 0.116 0.884 49 H 0.253 0.747 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.634 -2.629 8.845 11.976 hybrid contribution 0.952 0.268 -1.202 1.557 sum -6.681 -2.361 7.643 10.422 Atomic orbital electron populations 1.21519 0.94016 1.01625 1.01982 1.25977 1.00600 1.03054 1.13125 1.21596 1.01120 0.94630 1.02339 1.21510 1.00783 0.99703 0.97267 0.76173 0.61889 0.52808 0.64377 1.26977 1.07114 1.09732 1.17424 1.27187 1.26283 1.04641 1.04216 1.85409 1.79238 1.46721 1.48396 1.22412 0.99957 0.89436 0.88512 1.23731 1.00379 0.92624 0.87263 1.86486 1.63615 1.21474 1.48705 1.18929 0.90855 0.85070 0.90473 1.21665 1.00190 0.96981 1.02701 1.21636 0.95399 0.93447 0.93623 1.19469 0.99432 0.96682 0.96475 1.24915 0.97585 0.87396 1.09710 1.86460 1.34977 1.22101 1.93981 0.85252 0.75581 0.81030 0.77887 1.18041 1.17810 1.16908 1.20859 0.92543 0.89361 0.99110 1.20821 1.04083 0.96911 0.97478 1.43705 1.00187 1.00640 1.00516 1.94512 1.59566 1.65347 1.21979 1.94585 1.62788 1.02366 1.78019 0.91449 0.93601 0.92769 0.92152 0.93292 0.91277 0.93289 0.93469 0.92638 0.90301 0.90366 0.90589 0.92162 0.90513 0.90984 0.86724 0.91349 0.88412 0.86652 0.78853 0.81465 0.88433 0.74706 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.19 7.85 71.98 0.56 0.37 16 2 C -0.39 -0.64 0.53 -10.80 -0.01 -0.65 16 3 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 4 C -0.14 -0.72 7.85 71.98 0.56 -0.15 16 5 Si 1.32 -1.93 8.45 68.60 0.58 -1.35 16 6 C -0.51 2.11 8.50 113.37 0.96 3.08 16 7 C -0.52 -0.60 8.50 113.37 0.96 0.36 16 8 O -0.64 -0.63 8.52 -144.34 -1.23 -1.86 16 9 C 0.07 -0.32 5.51 71.98 0.40 0.08 16 10 C 0.03 -0.18 5.12 71.98 0.37 0.19 16 11 O -0.29 -1.30 8.12 -67.51 -0.55 -1.85 16 12 C 0.20 0.68 6.67 22.51 0.15 0.83 16 13 C -0.20 0.92 9.04 22.36 0.20 1.12 16 14 C -0.02 0.11 8.66 22.25 0.19 0.31 16 15 C -0.12 0.13 5.39 -19.85 -0.11 0.02 16 16 C -0.09 0.46 2.79 71.24 0.20 0.66 16 17 O -0.57 1.78 12.81 -148.98 -1.91 -0.13 16 18 Si 0.98 -7.45 25.13 68.60 1.72 -5.73 16 19 H -0.26 1.62 7.11 99.48 0.71 2.33 16 20 H -0.25 1.53 7.04 99.48 0.70 2.23 16 21 H -0.25 1.86 7.11 99.48 0.71 2.57 16 22 C 0.00 0.00 9.18 22.26 0.20 0.21 16 23 C -0.11 -0.93 6.87 36.48 0.25 -0.67 16 24 N 0.04 0.60 4.45 -46.24 -0.21 0.39 16 25 O -0.21 -3.71 18.45 18.89 0.35 -3.36 16 26 O -0.16 -2.92 17.24 25.61 0.44 -2.48 16 27 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 28 H 0.04 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.05 0.12 7.96 -2.39 -0.02 0.10 16 30 H 0.06 -0.03 7.79 -2.38 -0.02 -0.05 16 31 H 0.05 0.08 8.14 -2.38 -0.02 0.06 16 32 H 0.07 -0.17 7.79 -2.39 -0.02 -0.18 16 33 H 0.05 0.37 7.97 -2.39 -0.02 0.35 16 34 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.05 0.28 7.79 -2.38 -0.02 0.26 16 36 H 0.08 -0.50 7.48 -2.39 -0.02 -0.52 16 37 H 0.08 -0.32 7.79 -2.39 -0.02 -0.34 16 38 H 0.07 -0.32 7.79 -2.39 -0.02 -0.34 16 39 H 0.06 0.28 7.79 -2.39 -0.02 0.27 16 40 H 0.08 0.00 7.79 -2.39 -0.02 -0.02 16 41 H 0.07 -0.03 7.48 -2.39 -0.02 -0.05 16 42 H 0.12 -1.34 7.21 -2.39 -0.02 -1.35 16 43 H 0.07 -0.28 7.21 -2.39 -0.02 -0.30 16 44 H 0.10 -0.86 7.66 -2.39 -0.02 -0.87 16 45 H 0.12 -1.43 7.66 -2.38 -0.02 -1.45 16 46 H 0.19 -2.49 6.30 -2.91 -0.02 -2.51 16 47 H 0.17 -1.73 4.86 -2.91 -0.01 -1.74 16 48 H 0.10 -0.83 7.96 -2.39 -0.02 -0.85 16 49 H 0.40 -4.81 8.74 -74.06 -0.65 -5.45 16 50 H 0.16 0.68 7.61 -2.91 -0.02 0.65 16 Total: 0.00 -22.79 407.59 5.72 -17.08 By element: Atomic # 1 Polarization: -8.02 SS G_CDS: 1.04 Total: -6.98 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.47 Total: 6.26 kcal Atomic # 7 Polarization: 0.60 SS G_CDS: -0.21 Total: 0.39 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -2.90 Total: -9.67 kcal Atomic # 14 Polarization: -9.39 SS G_CDS: 2.30 Total: -7.08 kcal Total: -22.79 5.72 -17.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_10264010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.029 kcal (2) G-P(sol) polarization free energy of solvation -22.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds