Wall clock time and date at job start Mon Mar 8 2021 16:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.38239 * 119.94726 * 64.72722 * 4 2 1 6 6 C 1.38170 * 120.05299 * 179.72660 * 5 4 2 7 7 N 1.48006 * 120.02217 * 180.27346 * 6 5 4 8 8 O 1.21796 * 120.00501 * 0.26859 * 7 6 5 9 9 O 1.21807 * 119.99592 * 180.27170 * 7 6 5 10 10 C 1.38709 * 119.94701 * 0.54205 * 6 5 4 11 11 O 1.35895 * 120.05636 * 179.70967 * 10 6 5 12 12 C 1.42900 * 117.00006 * 180.02562 * 11 10 6 13 13 C 1.52998 * 109.47113 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.46722 * 180.02562 * 13 12 11 15 15 O 1.42969 * 109.46929 * 299.99710 * 13 12 11 16 16 C 1.43096 * 113.76843 * 178.79902 * 15 13 12 17 17 C 1.53261 * 108.93885 * 302.02998 * 16 15 13 18 18 H 1.09002 * 109.57338 * 294.71123 * 17 16 15 19 19 N 1.46500 * 109.57398 * 174.33671 * 17 16 15 20 20 C 1.34522 * 124.45746 * 300.33620 * 19 17 16 21 21 O 1.21449 * 125.70938 * 0.03076 * 20 19 17 22 22 C 1.47818 * 108.58145 * 179.90632 * 20 19 17 23 23 C 1.40949 * 105.87868 * 0.34793 * 22 20 19 24 24 C 1.38561 * 119.82349 * 179.79674 * 23 22 20 25 25 C 1.38620 * 119.71834 * 359.97438 * 24 23 22 26 26 C 1.38229 * 120.45793 * 359.97438 * 25 24 23 27 27 C 1.38560 * 134.30030 * 180.09588 * 22 20 19 28 28 C 1.34521 * 124.46323 * 120.63593 * 19 17 16 29 29 O 1.21454 * 125.71029 * 359.96493 * 28 19 17 30 30 C 1.53260 * 108.84799 * 54.52498 * 17 16 15 31 31 O 1.42956 * 109.47261 * 59.99819 * 13 12 11 32 32 C 1.38753 * 119.88467 * 359.72911 * 10 6 5 33 33 C 1.38121 * 119.94617 * 359.97438 * 32 10 6 34 34 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 35 35 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 36 36 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 37 37 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 38 38 H 1.08007 * 119.97243 * 359.97330 * 5 4 2 39 39 H 1.09000 * 109.46785 * 300.00003 * 12 11 10 40 40 H 1.09001 * 109.46932 * 59.99399 * 12 11 10 41 41 H 1.08999 * 109.55700 * 182.19180 * 16 15 13 42 42 H 1.08996 * 109.55769 * 61.86557 * 16 15 13 43 43 H 1.07997 * 120.14361 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.76956 * 179.97438 * 25 24 23 45 45 H 1.07995 * 119.77185 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.14099 * 0.25799 * 27 22 20 47 47 H 1.08997 * 109.55403 * 185.63774 * 30 17 16 48 48 H 1.09000 * 109.55623 * 65.31158 * 30 17 16 49 49 H 1.07996 * 120.02777 * 180.02562 * 32 10 6 50 50 H 1.08002 * 119.96979 * 179.97438 * 33 32 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 1.6792 -2.0592 1.3996 6 6 2.1436 -2.7141 2.5242 7 7 1.8785 -4.1593 2.7018 8 8 1.2550 -4.7729 1.8543 9 8 2.2839 -4.7351 3.6957 10 6 2.8536 -2.0148 3.4890 11 8 3.3063 -2.6554 4.5987 12 6 4.0295 -1.8722 5.5503 13 6 4.4544 -2.7586 6.7228 14 1 5.0056 -2.1610 7.4488 15 8 3.2934 -3.3132 7.3460 16 6 3.5878 -4.1836 8.4430 17 6 4.4854 -5.3226 7.9472 18 1 3.9361 -5.9359 7.2329 19 7 4.9061 -6.1461 9.0835 20 6 5.6040 -5.6881 10.1383 21 8 5.9790 -4.5440 10.2975 22 6 5.8355 -6.8098 11.0728 23 6 5.2323 -7.9370 10.4793 24 6 5.2831 -9.1639 11.1213 25 6 5.9280 -9.2738 12.3434 26 6 6.5205 -8.1686 12.9249 27 6 6.4763 -6.9346 12.2950 28 6 4.6503 -7.4610 9.2067 29 8 4.0428 -8.1431 8.4061 30 6 5.7186 -4.7201 7.2652 31 8 5.2887 -3.8156 6.2431 32 6 3.1005 -0.6600 3.3193 33 6 2.6394 -0.0112 2.1905 34 1 -0.3934 0.4418 -0.7650 35 1 1.7923 -0.5137 -0.8901 36 1 1.5616 2.4678 1.2086 37 1 3.5346 1.7703 -0.0322 38 1 1.1222 -2.6022 0.6504 39 1 4.9144 -1.4489 5.0750 40 1 3.3931 -1.0664 5.9163 41 1 2.6606 -4.5963 8.8405 42 1 4.1046 -3.6250 9.2234 43 1 4.8230 -10.0310 10.6710 44 1 5.9677 -10.2296 12.8447 45 1 7.0196 -8.2668 13.8776 46 1 6.9405 -6.0744 12.7543 47 1 6.3152 -5.5166 6.8205 48 1 6.3161 -4.1819 8.0011 49 1 3.6534 -0.1134 4.0689 50 1 2.8310 1.0434 2.0583 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29190_13594088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:58:11 Heat of formation + Delta-G solvation = -111.410017 kcal Electronic energy + Delta-G solvation = -43990.445106 eV Core-core repulsion = 38113.857147 eV Total energy + Delta-G solvation = -5876.587959 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.128 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.73873 -43.37674 -41.82534 -41.16553 -39.98651 -39.67493 -39.38127 -37.65774 -37.45876 -37.22611 -37.13479 -34.64395 -33.61864 -32.51254 -32.18641 -31.59743 -29.93614 -27.90948 -27.54637 -26.72822 -26.37826 -25.59922 -24.74586 -23.51337 -23.42557 -22.77699 -22.29983 -21.05448 -20.48963 -19.87550 -19.37501 -19.21936 -18.99770 -18.75001 -18.71562 -18.45464 -18.07115 -17.70416 -17.60920 -17.20599 -16.90180 -16.81031 -16.55232 -16.44537 -16.19343 -16.00288 -15.91046 -15.51244 -15.36195 -15.34804 -15.09436 -15.02293 -14.82435 -14.69635 -14.42061 -14.24195 -14.05723 -13.82667 -13.62668 -13.30633 -13.03102 -12.79335 -12.77733 -12.74082 -12.70621 -12.55821 -12.34737 -12.31591 -12.24495 -12.16768 -12.00843 -11.73024 -11.66300 -11.00025 -10.99120 -10.89469 -10.41395 -10.28212 -10.26942 -9.86248 -4.93034 -1.39896 -1.14083 -0.36163 -0.08352 0.05414 0.25192 0.84415 0.86034 1.24847 1.47258 1.58785 1.65846 1.89059 1.89821 2.13983 2.22142 2.41934 2.54941 2.96513 3.03543 3.06256 3.13845 3.19170 3.22996 3.41281 3.47245 3.50757 3.52153 3.64613 3.70670 3.87928 3.89183 3.97373 3.99319 4.00706 4.02262 4.12615 4.13242 4.16322 4.20886 4.22626 4.38100 4.39195 4.42634 4.47692 4.49980 4.68435 4.78350 4.85669 4.94172 5.11505 5.16249 5.22908 5.31674 5.38422 5.63374 5.67959 5.72286 5.89402 6.31438 6.39567 6.85134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.086 4.086 3 Si 0.780 3.220 4 C -0.120 4.120 5 C 0.003 3.997 6 C -0.102 4.102 7 N 0.036 4.964 8 O -0.195 6.195 9 O -0.167 6.167 10 C 0.196 3.804 11 O -0.284 6.284 12 C 0.056 3.944 13 C 0.236 3.764 14 H 0.117 0.883 15 O -0.387 6.387 16 C 0.055 3.945 17 C 0.075 3.925 18 H 0.109 0.891 19 N -0.569 5.569 20 C 0.577 3.423 21 O -0.479 6.479 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.046 4.046 25 C -0.083 4.083 26 C -0.083 4.083 27 C -0.041 4.041 28 C 0.572 3.428 29 O -0.491 6.491 30 C 0.055 3.945 31 O -0.386 6.386 32 C -0.196 4.196 33 C -0.027 4.027 34 H 0.407 0.593 35 H 0.099 0.901 36 H -0.281 1.281 37 H -0.275 1.275 38 H 0.163 0.837 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.151 0.849 44 H 0.176 0.824 45 H 0.178 0.822 46 H 0.158 0.842 47 H 0.109 0.891 48 H 0.081 0.919 49 H 0.194 0.806 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 7.090 4.054 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.378 6.378 2 C -0.194 4.194 3 Si 0.683 3.317 4 C -0.121 4.121 5 C -0.016 4.016 6 C -0.187 4.187 7 N 0.548 4.452 8 O -0.404 6.404 9 O -0.382 6.382 10 C 0.145 3.855 11 O -0.195 6.195 12 C -0.018 4.018 13 C 0.142 3.858 14 H 0.134 0.866 15 O -0.306 6.306 16 C -0.022 4.022 17 C -0.028 4.028 18 H 0.127 0.873 19 N -0.314 5.314 20 C 0.369 3.631 21 O -0.352 6.352 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.064 4.064 25 C -0.101 4.101 26 C -0.101 4.101 27 C -0.059 4.059 28 C 0.364 3.636 29 O -0.364 6.364 30 C -0.022 4.022 31 O -0.306 6.306 32 C -0.214 4.214 33 C -0.045 4.045 34 H 0.259 0.741 35 H 0.116 0.884 36 H -0.208 1.208 37 H -0.201 1.201 38 H 0.180 0.820 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.169 0.831 44 H 0.194 0.806 45 H 0.196 0.804 46 H 0.176 0.824 47 H 0.127 0.873 48 H 0.099 0.901 49 H 0.211 0.789 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.806 8.164 4.281 10.894 hybrid contribution -0.233 -1.333 0.161 1.362 sum 5.572 6.832 4.441 9.872 Atomic orbital electron populations 1.86450 1.17037 1.82674 1.51600 1.24983 0.86242 1.12209 0.95962 0.93564 0.77953 0.74403 0.85797 1.19648 1.01744 0.92140 0.98596 1.20901 0.92632 0.94660 0.93434 1.20833 1.15367 0.80314 1.02224 1.43705 0.98037 1.03834 0.99586 1.94496 1.40033 1.67577 1.38252 1.94635 1.53614 1.70516 1.19419 1.18896 0.89433 0.91638 0.85484 1.86551 1.67162 1.37888 1.27852 1.23596 0.98376 0.93255 0.86599 1.23977 0.81840 0.87404 0.92622 0.86570 1.88238 1.32313 1.62677 1.47414 1.22976 1.00643 0.89784 0.88830 1.22559 0.98627 0.94009 0.87580 0.87256 1.46472 1.52225 1.11218 1.21458 1.18712 0.75496 0.88022 0.80873 1.90778 1.48623 1.19877 1.75920 1.20447 1.04878 0.92695 0.98179 1.20419 1.03902 0.96910 0.95076 1.21163 0.95635 0.95143 0.94493 1.21960 0.93635 1.01318 0.93172 1.21982 0.96459 0.90674 1.00956 1.21176 0.94025 1.00050 0.90673 1.18883 0.77523 0.80846 0.86393 1.90843 1.38069 1.59984 1.47454 1.22979 0.94014 0.93908 0.91330 1.88232 1.66815 1.40544 1.34970 1.21622 1.06811 0.90857 1.02126 1.21485 0.91427 1.00529 0.91049 0.74077 0.88365 1.20829 1.20133 0.81982 0.85672 0.85861 0.87355 0.90073 0.83098 0.80621 0.80432 0.82397 0.87309 0.90074 0.78901 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.43 12.81 -148.98 -1.91 -0.48 16 2 C -0.09 0.35 2.79 71.23 0.20 0.54 16 3 Si 0.78 -5.93 29.85 68.60 2.05 -3.88 16 4 C -0.12 -0.21 5.39 -19.85 -0.11 -0.32 16 5 C 0.00 0.02 9.18 22.25 0.20 0.22 16 6 C -0.10 -1.18 6.87 36.47 0.25 -0.93 16 7 N 0.04 0.68 4.45 -46.24 -0.21 0.48 16 8 O -0.20 -3.89 18.45 18.89 0.35 -3.54 16 9 O -0.17 -3.76 17.24 25.60 0.44 -3.32 16 10 C 0.20 1.35 6.67 22.51 0.15 1.50 16 11 O -0.28 -2.52 7.94 -63.16 -0.50 -3.03 16 12 C 0.06 -0.05 4.83 71.98 0.35 0.30 16 13 C 0.24 0.69 3.59 71.98 0.26 0.95 16 14 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 15 O -0.39 -3.03 10.43 -121.89 -1.27 -4.31 16 16 C 0.05 0.31 6.32 72.07 0.46 0.77 16 17 C 0.07 0.55 3.07 45.17 0.14 0.69 16 18 H 0.11 1.32 7.60 -2.39 -0.02 1.30 16 19 N -0.57 -3.58 2.53 -739.55 -1.87 -5.45 16 20 C 0.58 2.73 7.35 86.82 0.64 3.37 16 21 O -0.48 -3.38 15.16 -3.55 -0.05 -3.43 16 22 C -0.16 -0.15 6.40 -20.00 -0.13 -0.28 16 23 C -0.16 -0.38 6.40 -20.00 -0.13 -0.50 16 24 C -0.05 0.15 10.09 22.44 0.23 0.37 16 25 C -0.08 0.75 10.04 22.36 0.22 0.97 16 26 C -0.08 0.81 10.04 22.36 0.22 1.03 16 27 C -0.04 0.21 10.09 22.44 0.23 0.44 16 28 C 0.57 4.71 8.02 86.82 0.70 5.40 16 29 O -0.49 -7.28 17.44 -3.57 -0.06 -7.35 16 30 C 0.05 0.30 6.32 72.07 0.46 0.76 16 31 O -0.39 -2.93 10.43 -121.89 -1.27 -4.21 16 32 C -0.20 0.24 9.04 22.37 0.20 0.44 16 33 C -0.03 0.03 8.66 22.25 0.19 0.22 16 34 H 0.41 -5.29 8.74 -74.05 -0.65 -5.94 16 35 H 0.10 -0.74 7.96 -2.38 -0.02 -0.76 16 36 H -0.28 0.54 7.05 99.48 0.70 1.24 16 37 H -0.28 0.97 7.11 99.48 0.71 1.67 16 38 H 0.16 0.98 7.61 -2.91 -0.02 0.96 16 39 H 0.13 -0.90 7.66 -2.39 -0.02 -0.92 16 40 H 0.12 -0.84 7.66 -2.39 -0.02 -0.86 16 41 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.32 6.67 -2.39 -0.02 0.30 16 43 H 0.15 -0.76 8.06 -2.91 -0.02 -0.78 16 44 H 0.18 -2.65 8.06 -2.91 -0.02 -2.68 16 45 H 0.18 -2.86 8.06 -2.91 -0.02 -2.89 16 46 H 0.16 -1.32 8.06 -2.91 -0.02 -1.34 16 47 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 48 H 0.08 0.31 6.67 -2.39 -0.02 0.29 16 49 H 0.19 -1.87 6.30 -2.91 -0.02 -1.89 16 50 H 0.16 -0.83 4.86 -2.91 -0.01 -0.84 16 Total: 0.00 -35.90 430.46 0.87 -35.03 By element: Atomic # 1 Polarization: -12.92 SS G_CDS: 0.45 Total: -12.47 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 4.73 Total: 15.95 kcal Atomic # 7 Polarization: -2.90 SS G_CDS: -2.08 Total: -4.98 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -4.28 Total: -29.66 kcal Atomic # 14 Polarization: -5.93 SS G_CDS: 2.05 Total: -3.88 kcal Total: -35.90 0.87 -35.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_13594088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.377 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds