Wall clock time and date at job start Mon Mar 8 2021 17:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47419 * 2 1 4 4 C 1.52998 * 109.47299 * 240.00084 * 2 1 3 5 5 O 1.42898 * 109.47340 * 119.99835 * 2 1 3 6 6 C 1.42902 * 113.99885 * 59.99831 * 5 2 1 7 7 H 1.08992 * 112.84940 * 18.80900 * 6 5 2 8 8 C 1.53782 * 113.61325 * 150.00568 * 6 5 2 9 9 C 1.53778 * 87.08154 * 140.06516 * 8 6 5 10 10 H 1.09000 * 113.61299 * 89.19416 * 9 8 6 11 11 C 1.52998 * 113.61339 * 220.01696 * 9 8 6 12 12 O 1.42906 * 109.46786 * 184.99904 * 11 9 8 13 13 C 1.35902 * 116.99413 * 179.97438 * 12 11 9 14 14 C 1.38718 * 120.05031 * 180.02562 * 13 12 11 15 15 N 1.47992 * 120.02923 * 0.03972 * 14 13 12 16 16 O 1.21805 * 120.00291 * 179.97438 * 15 14 13 17 17 O 1.21800 * 120.00183 * 359.97438 * 15 14 13 18 18 C 1.38168 * 119.93995 * 180.02562 * 14 13 12 19 19 C 1.38241 * 120.05975 * 0.02562 * 18 14 13 20 20 C 1.50699 * 119.94709 * 179.97438 * 19 18 14 21 21 O 1.42892 * 109.47249 * 299.99987 * 20 19 18 22 22 Si 1.86298 * 109.47032 * 179.97438 * 20 19 18 23 23 C 1.38287 * 120.10758 * 0.26718 * 19 18 14 24 24 C 1.38127 * 120.06001 * 359.45857 * 23 19 18 25 25 C 1.53784 * 113.68946 * 247.54027 * 6 5 2 26 26 H 1.08996 * 109.47438 * 300.00560 * 1 2 3 27 27 H 1.09007 * 109.46753 * 60.00069 * 1 2 3 28 28 H 1.08998 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47257 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46461 * 300.00101 * 3 2 1 31 31 H 1.08992 * 109.46805 * 59.99489 * 3 2 1 32 32 H 1.09005 * 109.47219 * 299.99566 * 4 2 1 33 33 H 1.08994 * 109.47326 * 59.99910 * 4 2 1 34 34 H 1.09002 * 109.47021 * 180.02562 * 4 2 1 35 35 H 1.08994 * 113.61643 * 25.51354 * 8 6 5 36 36 H 1.08997 * 113.61105 * 254.61677 * 8 6 5 37 37 H 1.08999 * 109.47498 * 65.00260 * 11 9 8 38 38 H 1.08999 * 109.47218 * 304.99918 * 11 9 8 39 39 H 1.08005 * 119.97045 * 179.97438 * 18 14 13 40 40 H 1.09004 * 109.46453 * 60.00055 * 20 19 18 41 41 H 0.96703 * 114.00176 * 299.99748 * 21 20 19 42 42 H 1.48506 * 109.99834 * 58.68765 * 22 20 19 43 43 H 1.48502 * 110.00011 * 180.02562 * 22 20 19 44 44 H 1.08008 * 119.97168 * 179.70893 * 23 19 18 45 45 H 1.07999 * 120.03135 * 180.25247 * 24 23 19 46 46 H 1.09000 * 113.61517 * 105.46082 * 25 6 5 47 47 H 1.08994 * 113.61396 * 334.55256 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 1 1.2523 -2.4451 0.3108 8 6 2.5836 -2.9378 2.0080 9 6 1.3666 -3.6133 2.6616 10 1 0.9755 -4.4552 2.0903 11 6 1.5700 -3.9428 4.1417 12 8 0.4387 -4.6678 4.6281 13 6 0.4602 -5.0407 5.9348 14 6 -0.6051 -5.7476 6.4731 15 7 -1.7661 -6.0975 5.6247 16 8 -2.7010 -6.7186 6.0978 17 8 -1.7868 -5.7643 4.4534 18 6 -0.5810 -6.1250 7.8020 19 6 0.5031 -5.7984 8.5952 20 6 0.5264 -6.2108 10.0444 21 8 -0.5873 -5.6276 10.7236 22 14 2.1104 -5.6254 10.8313 23 6 1.5635 -5.0884 8.0624 24 6 1.5470 -4.7136 6.7330 25 6 0.6067 -2.2979 2.4220 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2489 35 1 3.2161 -2.3999 2.7142 36 1 3.1487 -3.5982 1.3502 37 1 1.6797 -3.0180 4.7081 38 1 2.4680 -4.5493 4.2589 39 1 -1.4103 -6.6751 8.2218 40 1 0.4663 -7.2970 10.1140 41 1 -0.5988 -4.6609 10.7023 42 1 2.2200 -4.1490 10.7147 43 1 2.1459 -6.0265 12.2607 44 1 2.4073 -4.8303 8.6853 45 1 2.3772 -4.1627 6.3164 46 1 -0.4242 -2.4419 2.0985 47 1 0.6987 -1.5851 3.2414 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29190_14598384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:30:16 Heat of formation + Delta-G solvation = -60.105674 kcal Electronic energy + Delta-G solvation = -29693.374509 eV Core-core repulsion = 25426.991506 eV Total energy + Delta-G solvation = -4266.383003 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.29993 -41.66510 -40.84335 -39.64935 -38.26834 -37.63564 -37.39365 -33.95115 -33.41238 -32.21282 -29.71644 -28.36240 -28.31710 -27.82048 -26.69730 -26.48962 -24.62724 -23.24009 -22.68619 -20.87918 -20.78809 -20.20613 -19.79165 -19.11156 -18.65315 -18.33385 -17.81822 -17.29965 -17.16066 -16.53824 -16.40508 -16.23404 -15.91671 -15.70949 -15.58456 -14.87891 -14.67734 -14.52167 -14.36734 -13.90268 -13.70974 -13.49581 -13.42124 -13.30194 -13.06925 -13.01554 -12.79159 -12.70998 -12.66006 -12.58431 -12.41608 -12.29383 -12.25829 -12.15024 -11.94190 -11.80975 -11.69960 -11.36990 -11.19538 -10.84340 -10.76522 -10.35814 -9.75979 -4.94269 -1.28874 -0.22904 0.17219 0.34767 1.24039 1.58236 1.65536 1.98923 2.04648 2.72873 3.10875 3.29398 3.31314 3.42918 3.49018 3.59351 3.70379 3.74285 3.77807 3.82496 3.91020 3.97984 4.07144 4.11477 4.21498 4.24631 4.36420 4.40245 4.51756 4.55902 4.61330 4.66010 4.67239 4.78022 4.78959 4.80163 4.83375 4.85744 4.91824 4.93844 5.03173 5.07496 5.12752 5.15137 5.24643 5.31454 5.33244 5.39245 5.90451 6.41009 6.42261 6.45534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.378 6.378 6 C 0.057 3.943 7 H 0.095 0.905 8 C -0.115 4.115 9 C -0.104 4.104 10 H 0.102 0.898 11 C 0.057 3.943 12 O -0.299 6.299 13 C 0.198 3.802 14 C -0.107 4.107 15 N 0.038 4.962 16 O -0.212 6.212 17 O -0.162 6.162 18 C -0.003 4.003 19 C -0.150 4.150 20 C -0.087 4.087 21 O -0.550 6.550 22 Si 0.784 3.216 23 C -0.007 4.007 24 C -0.196 4.196 25 C -0.152 4.152 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.388 0.612 42 H -0.266 1.266 43 H -0.306 1.306 44 H 0.183 0.817 45 H 0.192 0.808 46 H 0.062 0.938 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.843 2.664 -0.067 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.061 3.939 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.298 6.298 6 C -0.001 4.001 7 H 0.113 0.887 8 C -0.152 4.152 9 C -0.123 4.123 10 H 0.120 0.880 11 C -0.017 4.017 12 O -0.210 6.210 13 C 0.147 3.853 14 C -0.192 4.192 15 N 0.549 4.451 16 O -0.416 6.416 17 O -0.380 6.380 18 C -0.022 4.022 19 C -0.152 4.152 20 C -0.194 4.194 21 O -0.358 6.358 22 Si 0.687 3.313 23 C -0.024 4.024 24 C -0.215 4.215 25 C -0.189 4.189 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.169 0.831 40 H 0.147 0.853 41 H 0.238 0.762 42 H -0.192 1.192 43 H -0.234 1.234 44 H 0.200 0.800 45 H 0.209 0.791 46 H 0.081 0.919 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.515 2.748 1.015 10.916 hybrid contribution -2.069 0.392 -0.329 2.131 sum 8.447 3.140 0.685 9.038 Atomic orbital electron populations 1.22452 0.95373 1.02514 1.02889 1.21650 0.93359 0.93480 0.85443 1.21789 1.01806 0.93126 1.02888 1.22448 1.02084 1.01049 0.97838 1.87994 1.74098 1.24092 1.43628 1.23675 0.96100 0.82467 0.97846 0.88685 1.23181 0.95828 0.96820 0.99392 1.22258 0.98669 0.97595 0.93772 0.87999 1.23375 0.87004 0.96475 0.94847 1.86422 1.45112 1.68736 1.20685 1.18943 0.91663 0.89350 0.85296 1.20807 0.89265 1.15829 0.93300 1.43749 1.01989 0.97971 1.01416 1.94531 1.29109 1.40636 1.77340 1.94564 1.86332 1.56418 1.00644 1.20837 0.99305 0.93724 0.88323 1.20329 0.94539 1.02758 0.97549 1.25443 1.01183 1.04090 0.88705 1.86625 1.46113 1.26518 1.76541 0.94150 0.78484 0.79693 0.78948 1.21667 0.96799 0.89353 0.94591 1.21710 0.98729 1.06546 0.94476 1.23618 0.98969 0.96734 0.99618 0.92540 0.90699 0.92361 0.91996 0.89933 0.92416 0.91961 0.90596 0.91857 0.88173 0.89238 0.89355 0.88200 0.83069 0.85309 0.76198 1.19186 1.23423 0.80038 0.79134 0.91900 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.09 8.38 71.98 0.60 0.69 16 2 C 0.10 -0.01 1.11 -10.79 -0.01 -0.02 16 3 C -0.14 0.15 8.84 71.99 0.64 0.78 16 4 C -0.18 0.37 8.38 71.98 0.60 0.98 16 5 O -0.38 -0.87 10.00 -148.98 -1.49 -2.36 16 6 C 0.06 -0.07 2.82 31.12 0.09 0.02 16 7 H 0.10 -0.19 5.54 -2.39 -0.01 -0.21 16 8 C -0.11 0.58 7.47 31.12 0.23 0.82 16 9 C -0.10 0.37 4.01 -10.27 -0.04 0.33 16 10 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 11 C 0.06 -0.31 4.58 71.98 0.33 0.02 16 12 O -0.30 -0.76 8.15 -71.30 -0.58 -1.34 16 13 C 0.20 0.20 6.67 22.51 0.15 0.35 16 14 C -0.11 -0.67 6.87 36.48 0.25 -0.42 16 15 N 0.04 0.54 4.45 -46.25 -0.21 0.33 16 16 O -0.21 -3.54 18.45 18.88 0.35 -3.20 16 17 O -0.16 -2.66 17.24 25.61 0.44 -2.22 16 18 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 19 C -0.15 0.69 5.39 -19.85 -0.11 0.58 16 20 C -0.09 0.47 2.82 71.24 0.20 0.67 16 21 O -0.55 0.39 12.77 -148.98 -1.90 -1.51 16 22 Si 0.78 -6.67 29.79 68.60 2.04 -4.63 16 23 C -0.01 0.06 8.66 22.26 0.19 0.26 16 24 C -0.20 1.50 9.04 22.37 0.20 1.70 16 25 C -0.15 0.08 7.47 31.12 0.23 0.32 16 26 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 28 H 0.06 -0.01 7.02 -2.39 -0.02 -0.03 16 29 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 31 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.06 -0.16 6.24 -2.38 -0.01 -0.18 16 33 H 0.08 -0.28 8.14 -2.39 -0.02 -0.29 16 34 H 0.06 -0.10 8.14 -2.39 -0.02 -0.11 16 35 H 0.10 -0.61 8.10 -2.39 -0.02 -0.63 16 36 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.09 -0.76 7.36 -2.39 -0.02 -0.78 16 38 H 0.10 -1.06 7.66 -2.39 -0.02 -1.08 16 39 H 0.15 0.54 7.61 -2.91 -0.02 0.52 16 40 H 0.13 -0.82 7.96 -2.38 -0.02 -0.83 16 41 H 0.39 -2.64 8.70 -74.06 -0.64 -3.28 16 42 H -0.27 1.76 7.11 99.48 0.71 2.47 16 43 H -0.31 -0.32 7.11 99.48 0.71 0.39 16 44 H 0.18 -2.92 4.87 -2.91 -0.01 -2.94 16 45 H 0.19 -2.81 6.30 -2.91 -0.02 -2.83 16 46 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 47 H 0.08 0.01 7.90 -2.39 -0.02 0.00 16 Total: 0.00 -21.55 383.37 2.80 -18.75 By element: Atomic # 1 Polarization: -11.47 SS G_CDS: 0.38 Total: -11.09 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 3.76 Total: 7.26 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -0.21 Total: 0.33 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -3.18 Total: -10.62 kcal Atomic # 14 Polarization: -6.67 SS G_CDS: 2.04 Total: -4.63 kcal Total: -21.55 2.80 -18.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_14598384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.356 kcal (2) G-P(sol) polarization free energy of solvation -21.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds