Wall clock time and date at job start Mon Mar 8 2021 13:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86307 * 109.47016 * 2 1 4 4 C 1.86296 * 109.47139 * 240.00199 * 2 1 3 5 5 C 1.86295 * 109.47137 * 120.00052 * 2 1 3 6 6 O 1.42897 * 109.47081 * 66.13578 * 5 2 1 7 7 C 1.35904 * 117.00065 * 77.74061 * 6 5 2 8 8 C 1.38712 * 120.05630 * 6.20197 * 7 6 5 9 9 C 1.38157 * 119.94677 * 180.02562 * 8 7 6 10 10 C 1.38249 * 120.05602 * 359.97438 * 9 8 7 11 11 C 1.50694 * 119.94488 * 179.97438 * 10 9 8 12 12 O 1.42901 * 109.47390 * 244.99725 * 11 10 9 13 13 Si 1.86299 * 109.47209 * 5.00054 * 11 10 9 14 14 H 1.48498 * 109.47080 * 59.99890 * 13 11 10 15 15 H 1.48503 * 109.47097 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47264 * 299.99717 * 13 11 10 17 17 C 1.38289 * 120.11025 * 0.27691 * 10 9 8 18 18 C 1.38127 * 120.05319 * 359.44942 * 17 10 9 19 19 N 1.48001 * 120.02582 * 180.30082 * 18 17 10 20 20 O 1.21800 * 120.00570 * 0.25082 * 19 18 17 21 21 O 1.21809 * 119.99837 * 180.24663 * 19 18 17 22 22 H 1.09007 * 109.46795 * 299.99640 * 1 2 3 23 23 H 1.08997 * 109.47100 * 59.99730 * 1 2 3 24 24 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47084 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.46959 * 300.00282 * 3 2 1 27 27 H 1.09007 * 109.46522 * 60.00451 * 3 2 1 28 28 H 1.08999 * 109.47339 * 294.75171 * 4 2 1 29 29 H 1.09003 * 109.47181 * 54.75446 * 4 2 1 30 30 H 1.08997 * 109.47255 * 174.74920 * 4 2 1 31 31 H 1.09002 * 109.47391 * 306.13380 * 5 2 1 32 32 H 1.09001 * 109.47206 * 186.13266 * 5 2 1 33 33 H 1.08008 * 120.02472 * 359.97438 * 8 7 6 34 34 H 1.08003 * 119.97434 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47074 * 125.00384 * 11 10 9 36 36 H 0.96705 * 113.99610 * 60.00341 * 12 11 10 37 37 H 1.08000 * 119.97174 * 179.70670 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5211 6 8 2.1289 -2.2606 1.4513 7 6 2.8823 -3.0511 0.6423 8 6 4.0172 -2.5385 0.0312 9 6 4.7812 -3.3440 -0.7912 10 6 4.4157 -4.6600 -1.0049 11 6 5.2505 -5.5362 -1.9029 12 8 4.4863 -5.9054 -3.0526 13 14 6.7711 -4.6040 -2.4410 14 1 7.5652 -4.2205 -1.2463 15 1 7.5934 -5.4672 -3.3264 16 1 6.3664 -3.3811 -3.1799 17 6 3.2818 -5.1720 -0.4010 18 6 2.5178 -4.3724 0.4265 19 7 1.3082 -4.9229 1.0778 20 8 0.9885 -6.0827 0.8878 21 8 0.6323 -4.2160 1.8039 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.5740 1.7565 0.0005 26 1 2.1206 2.2703 -0.8899 27 1 2.1207 2.2703 0.8901 28 1 2.1995 -1.9294 -1.4754 29 1 2.0460 -0.4214 -2.4086 30 1 3.5699 -0.7974 -1.5694 31 1 2.0338 -0.4317 2.4077 32 1 3.5685 -0.7841 1.5777 33 1 4.3029 -1.5103 0.1976 34 1 5.6647 -2.9452 -1.2675 35 1 5.5475 -6.4339 -1.3606 36 1 4.1876 -5.1546 -3.5840 37 1 2.9958 -6.1991 -0.5734 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29190_3095236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:58:24 Heat of formation + Delta-G solvation = -68.167031 kcal Electronic energy + Delta-G solvation = -21451.172755 eV Core-core repulsion = 18128.829891 eV Total energy + Delta-G solvation = -3322.342864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.29548 -41.60893 -39.52582 -37.59367 -37.34622 -33.49268 -32.31571 -29.72290 -28.46435 -28.38183 -28.23452 -27.79853 -26.30355 -23.73368 -22.72749 -20.43090 -19.79103 -19.03863 -18.63808 -18.31124 -17.46680 -16.98733 -16.30955 -16.13356 -15.91509 -15.38298 -14.94936 -14.34087 -14.03993 -13.97343 -13.89834 -13.83388 -13.46121 -13.32915 -13.25536 -13.05750 -13.02499 -12.74868 -12.69391 -12.28504 -12.28019 -12.14554 -12.10860 -11.70113 -10.96861 -10.92043 -10.85899 -10.70940 -10.50096 -9.48079 -1.27811 -0.20874 0.18045 0.36342 1.13980 1.43474 1.46244 1.52973 1.59681 1.76148 1.96012 2.06231 2.13042 2.51353 3.14653 3.32557 3.44785 3.56386 3.70660 3.81570 4.08442 4.30279 4.43051 4.57969 4.59456 4.68757 4.69807 4.72132 4.75590 4.78837 4.83771 4.85532 4.86673 5.09107 5.24337 5.48927 5.55196 5.63926 5.89062 6.46916 6.67597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.466 4.466 5 C -0.280 4.280 6 O -0.280 6.280 7 C 0.192 3.808 8 C -0.196 4.196 9 C -0.024 4.024 10 C -0.152 4.152 11 C -0.083 4.083 12 O -0.553 6.553 13 Si 0.979 3.021 14 H -0.244 1.244 15 H -0.277 1.277 16 H -0.231 1.231 17 C 0.000 4.000 18 C -0.108 4.108 19 N 0.039 4.961 20 O -0.206 6.206 21 O -0.170 6.170 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.194 0.806 34 H 0.173 0.827 35 H 0.126 0.874 36 H 0.391 0.609 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 7.534 -3.346 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.574 4.574 5 C -0.397 4.397 6 O -0.189 6.189 7 C 0.141 3.859 8 C -0.215 4.215 9 C -0.042 4.042 10 C -0.154 4.154 11 C -0.192 4.192 12 O -0.361 6.361 13 Si 0.800 3.200 14 H -0.167 1.167 15 H -0.202 1.202 16 H -0.153 1.153 17 C -0.019 4.019 18 C -0.193 4.193 19 N 0.549 4.451 20 O -0.412 6.412 21 O -0.385 6.385 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.211 0.789 34 H 0.190 0.810 35 H 0.144 0.856 36 H 0.240 0.760 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.759 7.543 -3.492 12.075 hybrid contribution -1.425 -0.274 0.471 1.526 sum 7.334 7.269 -3.021 10.759 Atomic orbital electron populations 1.26446 1.23473 1.03496 1.04667 0.78837 0.65421 0.66825 0.63847 1.26048 1.07367 1.17074 1.05272 1.26614 1.07952 1.06979 1.15811 1.28922 1.08221 0.82106 1.20447 1.86369 1.51698 1.21939 1.58935 1.18937 0.90456 0.87852 0.88623 1.21703 0.94175 1.04168 1.01447 1.21667 0.98126 0.91743 0.92647 1.20382 0.96894 0.95837 1.02293 1.25213 1.01681 1.04807 0.87512 1.86546 1.73839 1.37811 1.37855 0.85296 0.74986 0.78796 0.80912 1.16691 1.20242 1.15334 1.20857 0.91549 1.00368 0.89157 1.20802 0.93085 0.94688 1.10770 1.43759 1.02038 1.00289 0.99020 1.94523 1.75996 1.02475 1.68216 1.94572 1.51840 1.57935 1.34186 0.91047 0.90974 0.93105 0.89433 0.90547 0.90686 0.92892 0.90315 0.88439 0.85394 0.87655 0.78940 0.81008 0.85622 0.75967 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 0.63 8.65 113.37 0.98 1.61 16 2 Si 1.06 -9.29 11.68 68.60 0.80 -8.48 16 3 C -0.45 4.51 8.65 113.37 0.98 5.49 16 4 C -0.47 3.68 7.03 113.37 0.80 4.48 16 5 C -0.28 1.80 5.31 113.37 0.60 2.41 16 6 O -0.28 -0.82 7.81 -71.32 -0.56 -1.37 16 7 C 0.19 0.29 5.15 22.51 0.12 0.41 16 8 C -0.20 1.30 5.61 22.36 0.13 1.42 16 9 C -0.02 0.19 8.66 22.25 0.19 0.38 16 10 C -0.15 0.63 5.35 -19.85 -0.11 0.52 16 11 C -0.08 0.49 2.80 71.23 0.20 0.69 16 12 O -0.55 1.75 12.83 -148.98 -1.91 -0.16 16 13 Si 0.98 -7.87 25.13 68.60 1.72 -6.15 16 14 H -0.24 2.02 7.11 99.48 0.71 2.73 16 15 H -0.28 0.72 7.11 99.48 0.71 1.43 16 16 H -0.23 2.45 7.04 99.48 0.70 3.15 16 17 C 0.00 0.00 9.18 22.26 0.20 0.20 16 18 C -0.11 -0.71 6.87 36.48 0.25 -0.46 16 19 N 0.04 0.56 4.45 -46.24 -0.21 0.35 16 20 O -0.21 -3.43 18.45 18.89 0.35 -3.09 16 21 O -0.17 -2.91 17.24 25.59 0.44 -2.46 16 22 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 23 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 24 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 25 H 0.09 -1.10 7.96 -2.39 -0.02 -1.12 16 26 H 0.08 -0.69 7.96 -2.39 -0.02 -0.71 16 27 H 0.07 -0.71 7.96 -2.38 -0.02 -0.73 16 28 H 0.05 -0.20 6.24 -2.39 -0.01 -0.22 16 29 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 30 H 0.10 -1.23 6.55 -2.39 -0.02 -1.24 16 31 H 0.13 -0.99 7.96 -2.39 -0.02 -1.00 16 32 H 0.11 -1.29 6.07 -2.39 -0.01 -1.30 16 33 H 0.19 -2.75 4.74 -2.91 -0.01 -2.76 16 34 H 0.17 -2.41 4.86 -2.91 -0.01 -2.43 16 35 H 0.13 -0.83 7.96 -2.39 -0.02 -0.85 16 36 H 0.39 -3.97 8.70 -74.05 -0.64 -4.61 16 37 H 0.16 0.44 7.61 -2.91 -0.02 0.42 16 Total: 0.00 -20.39 308.56 6.19 -14.20 By element: Atomic # 1 Polarization: -11.20 SS G_CDS: 1.20 Total: -9.99 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 4.34 Total: 17.16 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -0.21 Total: 0.35 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -1.68 Total: -7.08 kcal Atomic # 14 Polarization: -17.16 SS G_CDS: 2.53 Total: -14.63 kcal Total: -20.39 6.19 -14.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_3095236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.963 kcal (2) G-P(sol) polarization free energy of solvation -20.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds