Wall clock time and date at job start Mon Mar 8 2021 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86295 * 109.47407 * 2 1 4 4 C 1.50707 * 109.47215 * 239.99871 * 2 1 3 5 5 C 1.38129 * 120.02529 * 104.97712 * 4 2 1 6 6 C 1.38286 * 120.05270 * 180.02562 * 5 4 2 7 7 N 1.47998 * 119.94216 * 180.02562 * 6 5 4 8 8 O 1.21803 * 120.00364 * 0.02562 * 7 6 5 9 9 O 1.21794 * 120.00295 * 179.97438 * 7 6 5 10 10 C 1.38249 * 120.11138 * 0.02562 * 6 5 4 11 11 C 1.38162 * 120.05533 * 359.74113 * 10 6 5 12 12 C 1.38709 * 119.94445 * 0.49115 * 11 10 6 13 13 O 1.35905 * 120.05398 * 179.78438 * 12 11 10 14 14 C 1.42899 * 117.00249 * 359.72860 * 13 12 11 15 15 C 1.52995 * 109.47232 * 179.97438 * 14 13 12 16 16 H 1.09002 * 112.85043 * 314.66319 * 15 14 13 17 17 C 1.53785 * 113.69093 * 85.93436 * 15 14 13 18 18 C 1.53779 * 87.08093 * 139.99088 * 17 15 14 19 19 H 1.09003 * 113.61186 * 89.11185 * 18 17 15 20 20 O 1.42898 * 113.68812 * 220.00737 * 18 17 15 21 21 C 1.53781 * 113.61293 * 183.47060 * 15 14 13 22 22 H 0.96704 * 113.99613 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47065 * 120.00277 * 2 1 3 24 24 H 1.48499 * 110.00226 * 180.02562 * 3 2 1 25 25 H 1.48502 * 110.00073 * 301.32024 * 3 2 1 26 26 H 1.07995 * 119.97277 * 0.02751 * 5 4 2 27 27 H 1.07998 * 119.96712 * 180.02562 * 10 6 5 28 28 H 1.08007 * 120.02670 * 180.25312 * 11 10 6 29 29 H 1.09005 * 109.47011 * 59.99240 * 14 13 12 30 30 H 1.09004 * 109.46738 * 299.99990 * 14 13 12 31 31 H 1.09003 * 113.60734 * 254.54208 * 17 15 14 32 32 H 1.08996 * 113.61146 * 25.43706 * 17 15 14 33 33 H 0.96702 * 113.99687 * 277.53355 * 20 18 17 34 34 H 1.09005 * 113.61302 * 334.47929 * 21 15 14 35 35 H 1.08993 * 113.62030 * 105.38774 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 2.4532 0.0157 -2.2833 6 6 2.9138 -0.6356 -3.4128 7 7 3.4729 0.1449 -4.5392 8 8 3.5275 1.3598 -4.4706 9 8 3.8794 -0.4276 -5.5344 10 6 2.8529 -2.0145 -3.4917 11 6 2.3363 -2.7456 -2.4394 12 6 1.8692 -2.0944 -1.3072 13 8 1.3565 -2.8112 -0.2726 14 6 1.3238 -4.2321 -0.4209 15 6 0.7189 -4.8622 0.8352 16 1 1.1210 -4.4400 1.7562 17 6 -0.8169 -4.9368 0.8108 18 6 -0.6812 -6.3279 1.4521 19 1 -0.6618 -6.3063 2.5417 20 8 -1.5991 -7.2918 0.9322 21 6 0.7156 -6.3998 0.8126 22 1 -0.3933 -0.8835 0.0004 23 1 1.7923 -0.5139 0.8900 24 1 3.5350 1.7701 -0.0006 25 1 1.5355 2.4771 -1.1921 26 1 2.5014 1.0930 -2.2242 27 1 3.2137 -2.5207 -4.3748 28 1 2.2927 -3.8231 -2.4998 29 1 2.3379 -4.6060 -0.5624 30 1 0.7162 -4.4930 -1.2874 31 1 -1.2999 -4.2034 1.4566 32 1 -1.2370 -4.9586 -0.1948 33 1 -2.4793 -7.2514 1.3307 34 1 0.7143 -6.8217 -0.1926 35 1 1.4695 -6.8477 1.4597 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_29409_11354858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:40:03 Heat of formation + Delta-G solvation = -65.357867 kcal Electronic energy + Delta-G solvation = -22108.854652 eV Core-core repulsion = 18464.394373 eV Total energy + Delta-G solvation = -3644.460280 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.17833 -42.04974 -40.65069 -39.04601 -37.80544 -37.47500 -36.26705 -33.43742 -32.49039 -29.94214 -27.36140 -27.15074 -26.96097 -24.80643 -23.10711 -22.96533 -20.93722 -20.24352 -19.70074 -19.66493 -18.78992 -18.49782 -18.35934 -17.63777 -17.51377 -16.67824 -16.52185 -16.10096 -15.81579 -15.39337 -14.93756 -14.87660 -14.63217 -14.04587 -13.85533 -13.75813 -13.42607 -12.95549 -12.88234 -12.64205 -12.49322 -12.25977 -12.19397 -12.10525 -12.05010 -11.61978 -11.53037 -11.27788 -11.01712 -10.75519 -10.09239 -4.97100 -1.23436 -0.52126 0.24137 0.38434 1.18224 1.41332 1.54397 1.83336 1.88231 2.88038 2.94603 3.04776 3.07894 3.20260 3.29781 3.41018 3.46293 3.60945 3.65678 3.69286 3.81040 3.82953 3.90919 4.00173 4.08051 4.30092 4.36482 4.44832 4.46369 4.48768 4.50947 4.66700 4.73589 4.81561 5.04197 5.36626 5.63815 6.36056 6.48880 6.68292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.072 4.072 3 Si 0.743 3.257 4 C -0.145 4.145 5 C -0.020 4.020 6 C -0.078 4.078 7 N 0.032 4.968 8 O -0.163 6.163 9 O -0.154 6.154 10 C -0.006 4.006 11 C -0.206 4.206 12 C 0.197 3.803 13 O -0.298 6.298 14 C 0.064 3.936 15 C -0.110 4.110 16 H 0.109 0.891 17 C -0.165 4.165 18 C 0.077 3.923 19 H 0.086 0.914 20 O -0.560 6.560 21 C -0.120 4.120 22 H 0.367 0.633 23 H 0.084 0.916 24 H -0.244 1.244 25 H -0.245 1.245 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.382 0.618 34 H 0.094 0.906 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -4.583 6.740 8.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.180 4.180 3 Si 0.640 3.360 4 C -0.146 4.146 5 C -0.038 4.038 6 C -0.161 4.161 7 N 0.551 4.449 8 O -0.377 6.377 9 O -0.371 6.371 10 C -0.025 4.025 11 C -0.225 4.225 12 C 0.149 3.851 13 O -0.209 6.209 14 C -0.011 4.011 15 C -0.129 4.129 16 H 0.127 0.873 17 C -0.202 4.202 18 C 0.018 3.982 19 H 0.104 0.896 20 O -0.365 6.365 21 C -0.158 4.158 22 H 0.215 0.785 23 H 0.102 0.898 24 H -0.168 1.168 25 H -0.169 1.169 26 H 0.175 0.825 27 H 0.179 0.821 28 H 0.174 0.826 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.230 0.770 34 H 0.113 0.887 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.531 -3.830 6.697 7.865 hybrid contribution -0.260 -1.496 -0.831 1.731 sum -1.791 -5.326 5.866 8.123 Atomic orbital electron populations 1.86766 1.16418 1.33294 1.96963 1.25196 0.85139 1.13617 0.94080 0.92805 0.78920 0.76143 0.88085 1.19702 1.05627 0.90806 0.98508 1.20749 0.91902 1.01526 0.89636 1.20900 1.12628 0.92218 0.90401 1.43463 0.98476 1.01340 1.01604 1.94575 1.60412 0.95570 1.87180 1.94553 1.49051 1.72672 1.20823 1.20907 0.91856 0.90536 0.99224 1.21333 1.05942 1.01660 0.93554 1.19096 0.88781 0.90656 0.86575 1.86105 1.75808 1.20939 1.38080 1.23112 1.01913 0.76507 0.99521 1.22355 0.96818 0.95779 0.97911 0.87331 1.23800 0.95220 0.98312 1.02896 1.23259 0.90222 0.87669 0.97067 0.89592 1.86524 1.25416 1.57833 1.66766 1.23078 0.96118 0.93565 1.02993 0.78513 0.89753 1.16815 1.16918 0.82491 0.82056 0.82594 0.90731 0.90713 0.90467 0.88988 0.76990 0.88701 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.08 12.65 -35.23 -0.45 -0.53 16 2 C -0.07 0.03 2.33 36.01 0.08 0.12 16 3 Si 0.74 -0.43 30.41 -169.99 -5.17 -5.60 16 4 C -0.14 -0.08 5.28 -104.47 -0.55 -0.63 16 5 C -0.02 -0.04 8.16 -39.60 -0.32 -0.37 16 6 C -0.08 -0.21 6.85 -79.94 -0.55 -0.76 16 7 N 0.03 0.17 4.45 33.97 0.15 0.32 16 8 O -0.16 -1.08 18.44 -29.46 -0.54 -1.63 16 9 O -0.15 -0.88 18.44 -29.46 -0.54 -1.43 16 10 C -0.01 0.00 9.55 -39.61 -0.38 -0.38 16 11 C -0.21 0.36 9.04 -39.44 -0.36 0.01 16 12 C 0.20 -0.18 6.62 -39.22 -0.26 -0.44 16 13 O -0.30 0.65 9.05 -19.44 -0.18 0.47 16 14 C 0.06 -0.25 4.57 37.16 0.17 -0.08 16 15 C -0.11 0.44 4.01 -89.81 -0.36 0.08 16 16 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 17 C -0.16 0.57 7.47 -25.92 -0.19 0.38 16 18 C 0.08 -0.22 5.21 -25.92 -0.14 -0.36 16 19 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 20 O -0.56 0.64 13.67 -35.23 -0.48 0.16 16 21 C -0.12 0.40 7.47 -25.92 -0.19 0.21 16 22 H 0.37 -0.76 8.61 45.56 0.39 -0.37 16 23 H 0.08 -0.16 7.83 -51.92 -0.41 -0.56 16 24 H -0.24 -0.22 7.11 56.52 0.40 0.18 16 25 H -0.24 -0.52 6.81 56.52 0.38 -0.14 16 26 H 0.16 0.39 4.48 -52.49 -0.24 0.15 16 27 H 0.16 -0.26 7.60 -52.49 -0.40 -0.66 16 28 H 0.16 -0.70 6.30 -52.48 -0.33 -1.03 16 29 H 0.07 -0.36 7.65 -51.93 -0.40 -0.76 16 30 H 0.07 -0.34 7.41 -51.93 -0.38 -0.72 16 31 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 32 H 0.09 -0.26 7.92 -51.93 -0.41 -0.67 16 33 H 0.38 -1.88 9.12 45.56 0.42 -1.47 16 34 H 0.09 -0.27 8.10 -51.93 -0.42 -0.69 16 35 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 LS Contribution 305.18 15.07 4.60 4.60 Total: 0.00 -6.93 305.18 -8.74 -15.66 By element: Atomic # 1 Polarization: -6.75 SS G_CDS: -3.08 Total: -9.83 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.04 Total: -2.21 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: 0.15 Total: 0.32 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -2.19 Total: -2.95 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.17 Total: -5.60 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -6.93 -8.74 -15.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_11354858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.693 kcal (2) G-P(sol) polarization free energy of solvation -6.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds