Wall clock time and date at job start Mon Mar 8 2021 14:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86295 * 109.47407 * 2 1 4 4 C 1.50707 * 109.47215 * 239.99871 * 2 1 3 5 5 C 1.38129 * 120.02529 * 104.97712 * 4 2 1 6 6 C 1.38286 * 120.05270 * 180.02562 * 5 4 2 7 7 N 1.47998 * 119.94216 * 180.02562 * 6 5 4 8 8 O 1.21803 * 120.00364 * 0.02562 * 7 6 5 9 9 O 1.21794 * 120.00295 * 179.97438 * 7 6 5 10 10 C 1.38249 * 120.11138 * 0.02562 * 6 5 4 11 11 C 1.38162 * 120.05533 * 359.74113 * 10 6 5 12 12 C 1.38709 * 119.94445 * 0.49115 * 11 10 6 13 13 O 1.35905 * 120.05398 * 179.78438 * 12 11 10 14 14 C 1.42899 * 117.00249 * 359.72860 * 13 12 11 15 15 C 1.52995 * 109.47232 * 179.97438 * 14 13 12 16 16 H 1.09002 * 112.85043 * 314.66319 * 15 14 13 17 17 C 1.53785 * 113.69093 * 85.93436 * 15 14 13 18 18 C 1.53779 * 87.08093 * 139.99088 * 17 15 14 19 19 H 1.09003 * 113.61186 * 89.11185 * 18 17 15 20 20 O 1.42898 * 113.68812 * 220.00737 * 18 17 15 21 21 C 1.53781 * 113.61293 * 183.47060 * 15 14 13 22 22 H 0.96704 * 113.99613 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47065 * 120.00277 * 2 1 3 24 24 H 1.48499 * 110.00226 * 180.02562 * 3 2 1 25 25 H 1.48502 * 110.00073 * 301.32024 * 3 2 1 26 26 H 1.07995 * 119.97277 * 0.02751 * 5 4 2 27 27 H 1.07998 * 119.96712 * 180.02562 * 10 6 5 28 28 H 1.08007 * 120.02670 * 180.25312 * 11 10 6 29 29 H 1.09005 * 109.47011 * 59.99240 * 14 13 12 30 30 H 1.09004 * 109.46738 * 299.99990 * 14 13 12 31 31 H 1.09003 * 113.60734 * 254.54208 * 17 15 14 32 32 H 1.08996 * 113.61146 * 25.43706 * 17 15 14 33 33 H 0.96702 * 113.99687 * 277.53355 * 20 18 17 34 34 H 1.09005 * 113.61302 * 334.47929 * 21 15 14 35 35 H 1.08993 * 113.62030 * 105.38774 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 2.4532 0.0157 -2.2833 6 6 2.9138 -0.6356 -3.4128 7 7 3.4729 0.1449 -4.5392 8 8 3.5275 1.3598 -4.4706 9 8 3.8794 -0.4276 -5.5344 10 6 2.8529 -2.0145 -3.4917 11 6 2.3363 -2.7456 -2.4394 12 6 1.8692 -2.0944 -1.3072 13 8 1.3565 -2.8112 -0.2726 14 6 1.3238 -4.2321 -0.4209 15 6 0.7189 -4.8622 0.8352 16 1 1.1210 -4.4400 1.7562 17 6 -0.8169 -4.9368 0.8108 18 6 -0.6812 -6.3279 1.4521 19 1 -0.6618 -6.3063 2.5417 20 8 -1.5991 -7.2918 0.9322 21 6 0.7156 -6.3998 0.8126 22 1 -0.3933 -0.8835 0.0004 23 1 1.7923 -0.5139 0.8900 24 1 3.5350 1.7701 -0.0006 25 1 1.5355 2.4771 -1.1921 26 1 2.5014 1.0930 -2.2242 27 1 3.2137 -2.5207 -4.3748 28 1 2.2927 -3.8231 -2.4998 29 1 2.3379 -4.6060 -0.5624 30 1 0.7162 -4.4930 -1.2874 31 1 -1.2999 -4.2034 1.4566 32 1 -1.2370 -4.9586 -0.1948 33 1 -2.4793 -7.2514 1.3307 34 1 0.7143 -6.8217 -0.1926 35 1 1.4695 -6.8477 1.4597 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29409_11354858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:40:02 Heat of formation + Delta-G solvation = -64.575250 kcal Electronic energy + Delta-G solvation = -22108.820716 eV Core-core repulsion = 18464.394373 eV Total energy + Delta-G solvation = -3644.426343 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.46906 -41.99813 -40.41452 -38.94184 -37.89900 -37.74500 -36.05238 -33.43274 -32.51936 -29.72075 -27.51104 -27.10922 -26.71191 -24.68219 -23.12706 -22.90157 -20.64941 -20.39225 -19.98382 -19.57136 -18.80826 -18.58288 -18.36840 -17.56366 -17.30617 -16.49641 -16.37709 -15.97231 -15.78498 -15.29616 -14.83179 -14.72533 -14.54748 -13.96835 -13.88788 -13.45738 -13.36095 -12.90772 -12.71347 -12.64607 -12.55937 -12.49921 -12.40763 -12.34490 -11.79691 -11.56365 -11.26010 -11.24459 -10.74994 -10.74083 -10.04842 -4.97802 -1.45948 -0.50414 0.03209 0.17612 1.19406 1.50693 1.57590 1.82285 1.87205 2.91372 3.04413 3.25702 3.28329 3.40617 3.49276 3.53868 3.65421 3.75844 3.79262 3.92630 3.97372 4.10648 4.14279 4.17884 4.30126 4.41517 4.50827 4.52869 4.66329 4.76139 4.78066 4.81390 4.99491 5.06917 5.12413 5.36572 5.79465 6.26701 6.52529 6.86020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.070 4.070 3 Si 0.797 3.203 4 C -0.153 4.153 5 C -0.036 4.036 6 C -0.100 4.100 7 N 0.035 4.965 8 O -0.216 6.216 9 O -0.154 6.154 10 C -0.001 4.001 11 C -0.193 4.193 12 C 0.210 3.790 13 O -0.294 6.294 14 C 0.056 3.944 15 C -0.101 4.101 16 H 0.113 0.887 17 C -0.163 4.163 18 C 0.068 3.932 19 H 0.095 0.905 20 O -0.584 6.584 21 C -0.122 4.122 22 H 0.378 0.622 23 H 0.107 0.893 24 H -0.267 1.267 25 H -0.292 1.292 26 H 0.142 0.858 27 H 0.179 0.821 28 H 0.192 0.808 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.395 0.605 34 H 0.089 0.911 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 -6.802 7.922 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.179 4.179 3 Si 0.700 3.300 4 C -0.154 4.154 5 C -0.055 4.055 6 C -0.184 4.184 7 N 0.547 4.453 8 O -0.419 6.419 9 O -0.375 6.375 10 C -0.020 4.020 11 C -0.212 4.212 12 C 0.161 3.839 13 O -0.205 6.205 14 C -0.018 4.018 15 C -0.119 4.119 16 H 0.132 0.868 17 C -0.200 4.200 18 C 0.009 3.991 19 H 0.113 0.887 20 O -0.392 6.392 21 C -0.160 4.160 22 H 0.228 0.772 23 H 0.125 0.875 24 H -0.193 1.193 25 H -0.220 1.220 26 H 0.159 0.841 27 H 0.196 0.804 28 H 0.209 0.791 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.245 0.755 34 H 0.108 0.892 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.898 -5.983 7.921 10.106 hybrid contribution -0.216 -0.958 -1.153 1.515 sum -2.113 -6.941 6.768 9.922 Atomic orbital electron populations 1.86737 1.16575 1.34420 1.96982 1.25146 0.85082 1.13144 0.94543 0.92282 0.76630 0.75191 0.85876 1.19791 1.05673 0.91760 0.98226 1.20754 0.93136 1.01139 0.90470 1.21073 1.14546 0.93076 0.89671 1.43851 0.98005 1.01278 1.02141 1.94567 1.62689 0.96732 1.87919 1.94501 1.48808 1.72417 1.21762 1.21202 0.91275 0.89197 1.00365 1.21688 1.04153 1.03136 0.92193 1.19103 0.87640 0.90146 0.87009 1.86122 1.75012 1.21999 1.37382 1.23351 1.03217 0.75262 0.99961 1.22285 0.96228 0.95231 0.98180 0.86841 1.23758 0.95774 0.98006 1.02483 1.23450 0.90255 0.87699 0.97690 0.88677 1.86480 1.26612 1.58578 1.67537 1.23095 0.96023 0.94053 1.02789 0.77234 0.87523 1.19295 1.21963 0.84080 0.80410 0.79103 0.89029 0.89646 0.90162 0.89680 0.75527 0.89197 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.24 12.65 -148.98 -1.89 -1.65 16 2 C -0.07 0.10 2.33 71.24 0.17 0.27 16 3 Si 0.80 0.26 30.41 68.60 2.09 2.34 16 4 C -0.15 -0.11 5.28 -19.77 -0.10 -0.21 16 5 C -0.04 -0.21 8.16 22.26 0.18 -0.03 16 6 C -0.10 -0.63 6.85 36.39 0.25 -0.38 16 7 N 0.03 0.45 4.45 -46.44 -0.21 0.24 16 8 O -0.22 -3.65 18.44 18.88 0.35 -3.30 16 9 O -0.15 -1.98 18.44 18.89 0.35 -1.64 16 10 C 0.00 0.00 9.55 22.25 0.21 0.21 16 11 C -0.19 1.18 9.04 22.36 0.20 1.38 16 12 C 0.21 -0.81 6.62 22.50 0.15 -0.66 16 13 O -0.29 2.11 9.05 -92.48 -0.84 1.27 16 14 C 0.06 -0.62 4.57 71.98 0.33 -0.29 16 15 C -0.10 1.04 4.01 -10.27 -0.04 1.00 16 16 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16 17 C -0.16 1.38 7.47 31.12 0.23 1.61 16 18 C 0.07 -0.46 5.21 31.12 0.16 -0.30 16 19 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 20 O -0.58 1.66 13.67 -148.98 -2.04 -0.38 16 21 C -0.12 1.01 7.47 31.12 0.23 1.25 16 22 H 0.38 -2.14 8.61 -74.05 -0.64 -2.77 16 23 H 0.11 -0.60 7.83 -2.38 -0.02 -0.62 16 24 H -0.27 -1.03 7.11 99.48 0.71 -0.32 16 25 H -0.29 -2.33 6.81 99.48 0.68 -1.66 16 26 H 0.14 1.18 4.48 -2.91 -0.01 1.17 16 27 H 0.18 -0.85 7.60 -2.91 -0.02 -0.88 16 28 H 0.19 -2.54 6.30 -2.91 -0.02 -2.55 16 29 H 0.09 -1.25 7.65 -2.38 -0.02 -1.27 16 30 H 0.09 -1.06 7.41 -2.39 -0.02 -1.08 16 31 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.08 -0.58 7.92 -2.39 -0.02 -0.60 16 33 H 0.39 -4.00 9.12 -74.06 -0.68 -4.67 16 34 H 0.09 -0.64 8.10 -2.38 -0.02 -0.66 16 35 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 Total: 0.00 -18.52 305.18 -0.36 -18.89 By element: Atomic # 1 Polarization: -19.46 SS G_CDS: -0.15 Total: -19.62 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 1.97 Total: 3.85 kcal Atomic # 7 Polarization: 0.45 SS G_CDS: -0.21 Total: 0.24 kcal Atomic # 8 Polarization: -1.63 SS G_CDS: -4.06 Total: -5.70 kcal Atomic # 14 Polarization: 0.26 SS G_CDS: 2.09 Total: 2.34 kcal Total: -18.52 -0.36 -18.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_11354858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.690 kcal (2) G-P(sol) polarization free energy of solvation -18.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds