Wall clock time and date at job start Mon Mar 8 2021 15:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46675 * 2 1 4 4 C 1.52998 * 109.47082 * 240.00480 * 2 1 3 5 5 O 1.45190 * 109.47091 * 120.00048 * 2 1 3 6 6 C 1.34637 * 117.00279 * 60.00323 * 5 2 1 7 7 O 1.21515 * 119.99950 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00076 * 179.97438 * 6 5 2 9 9 C 1.46507 * 119.99900 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.84601 * 23.80244 * 9 8 6 11 11 C 1.53774 * 113.61552 * 154.99727 * 9 8 6 12 12 C 1.53781 * 87.08122 * 89.20121 * 11 9 8 13 13 H 1.09001 * 113.61442 * 270.79968 * 12 11 9 14 14 C 1.52998 * 113.61700 * 139.98122 * 12 11 9 15 15 O 1.42897 * 109.47325 * 174.99916 * 14 12 11 16 16 C 1.35897 * 116.99904 * 179.97438 * 15 14 12 17 17 C 1.38717 * 120.05486 * 180.25609 * 16 15 14 18 18 C 1.50693 * 120.02749 * 0.04519 * 17 16 15 19 19 O 1.42911 * 109.47310 * 285.23014 * 18 17 16 20 20 Si 1.86306 * 109.47300 * 165.23347 * 18 17 16 21 21 C 1.38163 * 119.94355 * 180.27938 * 17 16 15 22 22 C 1.38251 * 120.05527 * 359.48558 * 21 17 16 23 23 N 1.48000 * 119.94262 * 180.25668 * 22 21 17 24 24 O 1.21801 * 120.00448 * 0.02562 * 23 22 21 25 25 O 1.21808 * 119.99864 * 180.02562 * 23 22 21 26 26 C 1.38290 * 120.11123 * 0.24024 * 22 21 17 27 27 C 1.38122 * 120.05324 * 0.02562 * 26 22 21 28 28 C 1.53775 * 87.07974 * 25.43235 * 12 11 9 29 29 H 1.08997 * 109.47445 * 299.99790 * 1 2 3 30 30 H 1.08998 * 109.47155 * 59.99886 * 1 2 3 31 31 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46765 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47423 * 299.99950 * 3 2 1 34 34 H 1.08998 * 109.47271 * 60.00422 * 3 2 1 35 35 H 1.09007 * 109.46995 * 299.99473 * 4 2 1 36 36 H 1.09003 * 109.47417 * 59.99323 * 4 2 1 37 37 H 1.08997 * 109.47421 * 179.97438 * 4 2 1 38 38 H 0.96995 * 120.00214 * 359.97438 * 8 6 5 39 39 H 1.09004 * 113.61410 * 334.65058 * 11 9 8 40 40 H 1.08997 * 113.61688 * 203.75116 * 11 9 8 41 41 H 1.09000 * 109.47119 * 54.99935 * 14 12 11 42 42 H 1.09000 * 109.47255 * 295.00504 * 14 12 11 43 43 H 1.09001 * 109.47691 * 45.23029 * 18 17 16 44 44 H 0.96703 * 113.99446 * 59.99706 * 19 18 17 45 45 H 1.48501 * 109.99645 * 299.99850 * 20 18 17 46 46 H 1.48496 * 109.99936 * 61.31562 * 20 18 17 47 47 H 1.08002 * 119.97507 * 179.77133 * 21 17 16 48 48 H 1.08000 * 119.96817 * 180.02562 * 26 22 21 49 49 H 1.07998 * 120.02548 * 179.97438 * 27 26 22 50 50 H 1.08999 * 113.61696 * 89.11421 * 28 12 11 51 51 H 1.09001 * 113.61430 * 220.01737 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5039 8 7 2.0682 -2.6657 2.4166 9 6 1.6741 -4.0669 2.5831 10 1 1.4210 -4.5503 1.6395 11 6 2.6476 -4.8816 3.4509 12 6 1.8065 -4.4477 4.6630 13 1 2.1360 -3.5098 5.1099 14 6 1.6012 -5.5579 5.6956 15 8 0.9125 -5.0307 6.8313 16 6 0.6487 -5.8931 7.8479 17 6 -0.0215 -5.4499 8.9787 18 6 -0.4588 -4.0115 9.0807 19 8 0.6770 -3.1859 9.3468 20 14 -1.6931 -3.8343 10.4649 21 6 -0.2834 -6.3273 10.0133 22 6 0.1125 -7.6485 9.9178 23 7 -0.1743 -8.5875 11.0252 24 8 -0.7591 -8.1963 12.0195 25 8 0.1744 -9.7516 10.9423 26 6 0.7758 -8.0941 8.7891 27 6 1.0448 -7.2196 7.7544 28 6 0.6279 -4.2874 3.6883 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 2.6283 -2.2370 3.0824 39 1 3.6626 -4.4843 3.4590 40 1 2.6132 -5.9536 3.2568 41 1 2.5701 -5.9481 6.0071 42 1 1.0114 -6.3608 5.2534 43 1 -0.9193 -3.7041 8.1418 44 1 1.3621 -3.2283 8.6657 45 1 -2.8791 -4.6879 10.2001 46 1 -1.0678 -4.2199 11.7554 47 1 -0.8019 -5.9819 10.8955 48 1 1.0836 -9.1268 8.7168 49 1 1.5632 -7.5681 6.8734 50 1 0.0413 -5.1969 3.5591 51 1 0.0123 -3.4103 3.8881 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29409_15734082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:13:40 Heat of formation + Delta-G solvation = -95.105752 kcal Electronic energy + Delta-G solvation = -35165.583142 eV Core-core repulsion = 30229.810559 eV Total energy + Delta-G solvation = -4935.772583 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.176 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.44755 -42.07500 -41.83496 -40.47573 -38.99140 -37.88313 -37.84750 -37.73180 -35.38520 -34.16391 -33.38155 -32.46617 -29.72901 -28.38743 -28.31830 -27.51539 -27.09633 -26.71203 -25.13105 -23.86296 -23.11459 -22.81322 -21.19310 -20.41152 -20.32940 -19.94430 -19.59868 -19.28064 -18.78852 -18.36372 -17.73768 -17.55086 -17.35135 -17.17214 -16.57260 -16.49957 -15.98486 -15.84192 -15.68374 -15.43636 -15.24188 -15.13929 -14.71662 -14.50108 -14.38119 -14.18975 -13.79551 -13.74378 -13.41624 -13.37599 -13.17566 -13.08864 -12.93946 -12.88571 -12.87865 -12.59420 -12.54205 -12.48770 -12.41942 -12.35576 -12.32398 -11.96406 -11.69658 -11.52052 -11.41507 -11.29598 -11.21317 -11.13965 -10.71286 -10.20442 -10.00541 -4.98318 -1.43956 -0.47317 0.05598 0.20000 1.11876 1.19583 1.50557 1.63154 1.71233 1.81596 1.90129 2.93767 3.07614 3.09728 3.29577 3.38266 3.45248 3.52105 3.65573 3.72167 3.75249 3.77009 3.79941 3.80501 3.92597 3.97821 4.13171 4.21501 4.30951 4.36744 4.44220 4.47152 4.52931 4.57271 4.59414 4.60530 4.73724 4.74851 4.75740 4.80506 4.82080 4.86052 4.88919 4.97267 5.04096 5.07064 5.10492 5.16729 5.25060 5.29899 5.46816 5.60455 5.85727 6.27861 6.35889 6.54786 7.31527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.594 6.594 8 N -0.683 5.683 9 C 0.125 3.875 10 H 0.092 0.908 11 C -0.118 4.118 12 C -0.101 4.101 13 H 0.109 0.891 14 C 0.051 3.949 15 O -0.296 6.296 16 C 0.212 3.788 17 C -0.155 4.155 18 C -0.068 4.068 19 O -0.540 6.540 20 Si 0.793 3.207 21 C -0.037 4.037 22 C -0.101 4.101 23 N 0.035 4.965 24 O -0.220 6.220 25 O -0.153 6.153 26 C -0.002 4.002 27 C -0.190 4.190 28 C -0.148 4.148 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.417 0.583 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.379 0.621 45 H -0.269 1.269 46 H -0.291 1.291 47 H 0.139 0.861 48 H 0.179 0.821 49 H 0.197 0.803 50 H 0.103 0.897 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 4.361 -7.731 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.398 3.602 7 O -0.484 6.484 8 N -0.343 5.343 9 C 0.020 3.980 10 H 0.110 0.890 11 C -0.156 4.156 12 C -0.119 4.119 13 H 0.127 0.873 14 C -0.023 4.023 15 O -0.207 6.207 16 C 0.163 3.837 17 C -0.157 4.157 18 C -0.177 4.177 19 O -0.347 6.347 20 Si 0.696 3.304 21 C -0.056 4.056 22 C -0.185 4.185 23 N 0.547 4.453 24 O -0.422 6.422 25 O -0.374 6.374 26 C -0.021 4.021 27 C -0.209 4.209 28 C -0.187 4.187 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.254 0.746 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.123 0.877 44 H 0.228 0.772 45 H -0.195 1.195 46 H -0.219 1.219 47 H 0.157 0.843 48 H 0.196 0.804 49 H 0.214 0.786 50 H 0.122 0.878 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.475 4.648 -7.562 9.532 hybrid contribution 0.801 -1.376 -0.075 1.594 sum 4.276 3.272 -7.638 9.345 Atomic orbital electron populations 1.22472 0.94080 1.03678 1.03496 1.22336 0.94406 0.92558 0.81500 1.21895 1.02488 0.90914 1.04240 1.22475 1.01668 1.02251 0.97335 1.86307 1.71536 1.23305 1.47247 1.18355 0.78595 0.80778 0.82435 1.90912 1.42148 1.70905 1.44463 1.44369 1.54825 1.12082 1.23011 1.21887 0.97423 0.79164 0.99482 0.88958 1.23336 0.98594 1.01956 0.91709 1.22613 0.97307 0.99275 0.92701 0.87308 1.23475 0.97779 0.97842 0.83188 1.86138 1.71702 1.36736 1.26147 1.19084 0.88702 0.89247 0.86645 1.19766 1.04617 0.98360 0.92911 1.25081 0.95478 0.84583 1.12596 1.86743 1.30765 1.65735 1.51476 0.92294 0.75633 0.88909 0.73526 1.20740 0.95356 0.90760 0.98726 1.21089 1.15546 0.90361 0.91527 1.43876 0.97698 1.01735 1.01979 1.94569 1.42842 1.82449 1.22371 1.94499 1.54204 1.02284 1.86445 1.21227 0.89582 1.03031 0.88229 1.21720 1.06035 0.91193 1.01944 1.23597 0.96789 1.03183 0.95102 0.91943 0.89564 0.91765 0.91133 0.88401 0.91163 0.91730 0.89568 0.91880 0.74570 0.88889 0.86022 0.88424 0.89015 0.87737 0.77162 1.19463 1.21861 0.84329 0.80370 0.78576 0.87818 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.29 8.37 71.98 0.60 0.31 16 2 C 0.13 0.14 1.13 -10.79 -0.01 0.13 16 3 C -0.14 0.50 8.85 71.98 0.64 1.14 16 4 C -0.18 -0.26 8.37 71.98 0.60 0.34 16 5 O -0.37 -1.12 9.94 -55.46 -0.55 -1.68 16 6 C 0.64 2.34 8.06 129.79 1.05 3.39 16 7 O -0.59 -5.52 11.48 19.79 0.23 -5.29 16 8 N -0.68 2.70 5.27 -567.61 -2.99 -0.29 16 9 C 0.12 -0.87 4.32 45.51 0.20 -0.67 16 10 H 0.09 -0.25 7.46 -2.39 -0.02 -0.26 16 11 C -0.12 1.66 7.39 31.12 0.23 1.89 16 12 C -0.10 1.37 3.89 -10.27 -0.04 1.33 16 13 H 0.11 -1.47 8.14 -2.39 -0.02 -1.48 16 14 C 0.05 -0.75 4.58 71.98 0.33 -0.42 16 15 O -0.30 2.73 9.02 -92.39 -0.83 1.89 16 16 C 0.21 -1.16 6.61 22.51 0.15 -1.01 16 17 C -0.15 0.00 5.28 -19.77 -0.10 -0.10 16 18 C -0.07 0.11 2.33 71.23 0.17 0.28 16 19 O -0.54 0.49 12.65 -148.98 -1.89 -1.40 16 20 Si 0.79 0.47 30.41 68.60 2.09 2.56 16 21 C -0.04 -0.20 8.16 22.26 0.18 -0.01 16 22 C -0.10 -0.57 6.85 36.39 0.25 -0.32 16 23 N 0.03 0.43 4.45 -46.44 -0.21 0.23 16 24 O -0.22 -3.70 18.44 18.89 0.35 -3.35 16 25 O -0.15 -1.89 18.44 18.88 0.35 -1.54 16 26 C 0.00 0.00 9.55 22.25 0.21 0.22 16 27 C -0.19 1.56 9.04 22.37 0.20 1.76 16 28 C -0.15 1.33 7.43 31.12 0.23 1.56 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.06 0.44 5.88 -2.39 -0.01 0.42 16 32 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 33 H 0.10 -0.65 8.14 -2.39 -0.02 -0.66 16 34 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.06 0.42 5.88 -2.38 -0.01 0.41 16 36 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.42 -3.53 8.81 -92.71 -0.82 -4.35 16 39 H 0.09 -1.37 8.14 -2.39 -0.02 -1.39 16 40 H 0.12 -2.07 8.10 -2.39 -0.02 -2.09 16 41 H 0.10 -1.77 7.66 -2.39 -0.02 -1.79 16 42 H 0.09 -1.57 7.36 -2.39 -0.02 -1.59 16 43 H 0.10 -0.56 7.84 -2.39 -0.02 -0.58 16 44 H 0.38 -2.51 8.57 -74.05 -0.64 -3.15 16 45 H -0.27 -1.16 7.11 99.48 0.71 -0.46 16 46 H -0.29 -2.36 6.81 99.48 0.68 -1.68 16 47 H 0.14 1.15 4.48 -2.91 -0.01 1.14 16 48 H 0.18 -1.11 7.61 -2.91 -0.02 -1.13 16 49 H 0.20 -3.22 6.30 -2.91 -0.02 -3.24 16 50 H 0.10 -1.07 7.90 -2.39 -0.02 -1.09 16 51 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 Total: 0.00 -24.16 419.52 0.97 -23.19 By element: Atomic # 1 Polarization: -23.65 SS G_CDS: -0.45 Total: -24.11 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 4.88 Total: 9.79 kcal Atomic # 7 Polarization: 3.13 SS G_CDS: -3.20 Total: -0.07 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -2.35 Total: -11.37 kcal Atomic # 14 Polarization: 0.47 SS G_CDS: 2.09 Total: 2.56 kcal Total: -24.16 0.97 -23.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_15734082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.913 kcal (2) G-P(sol) polarization free energy of solvation -24.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds