Wall clock time and date at job start Mon Mar 8 2021 15:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.52998 * 109.47024 * 240.00220 * 2 1 3 5 5 O 1.45198 * 109.47118 * 120.00676 * 2 1 3 6 6 C 1.34634 * 117.00454 * 59.99679 * 5 2 1 7 7 O 1.21514 * 119.99794 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00021 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.84688 * 335.91529 * 9 8 6 11 11 C 1.53775 * 113.61467 * 107.22238 * 9 8 6 12 12 C 1.53784 * 87.08028 * 139.98120 * 11 9 8 13 13 H 1.09004 * 113.68613 * 89.12337 * 12 11 9 14 14 C 1.52992 * 113.61437 * 220.01769 * 12 11 9 15 15 O 1.42902 * 109.47436 * 272.49391 * 14 12 11 16 16 C 1.35895 * 117.00243 * 180.02562 * 15 14 12 17 17 C 1.38713 * 120.05676 * 179.72910 * 16 15 14 18 18 C 1.50696 * 120.02599 * 0.02562 * 17 16 15 19 19 O 1.42896 * 109.47255 * 75.00312 * 18 17 16 20 20 Si 1.86300 * 109.47299 * 195.00150 * 18 17 16 21 21 C 1.38168 * 119.94632 * 179.79376 * 17 16 15 22 22 C 1.38243 * 120.05103 * 0.48073 * 21 17 16 23 23 N 1.48008 * 119.94065 * 179.72459 * 22 21 17 24 24 O 1.21804 * 119.99809 * 180.02562 * 23 22 21 25 25 O 1.21793 * 120.00184 * 0.02611 * 23 22 21 26 26 C 1.38288 * 120.11668 * 359.75047 * 22 21 17 27 27 C 1.38128 * 120.05129 * 0.02562 * 26 22 21 28 28 C 1.53781 * 113.61226 * 204.72300 * 9 8 6 29 29 H 1.09003 * 109.47056 * 299.99821 * 1 2 3 30 30 H 1.08999 * 109.46878 * 59.99793 * 1 2 3 31 31 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46800 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46961 * 300.00429 * 3 2 1 34 34 H 1.09001 * 109.46524 * 60.00216 * 3 2 1 35 35 H 1.08998 * 109.47435 * 300.00287 * 4 2 1 36 36 H 1.09008 * 109.47422 * 60.00035 * 4 2 1 37 37 H 1.09000 * 109.47606 * 180.02562 * 4 2 1 38 38 H 0.97005 * 120.00161 * 359.72161 * 8 6 5 39 39 H 1.09003 * 113.61589 * 254.53047 * 11 9 8 40 40 H 1.09001 * 113.61847 * 25.43384 * 11 9 8 41 41 H 1.09003 * 109.47581 * 32.49772 * 14 12 11 42 42 H 1.09007 * 109.47141 * 152.49753 * 14 12 11 43 43 H 1.08999 * 109.47686 * 315.00253 * 18 17 16 44 44 H 0.96706 * 113.99927 * 60.00047 * 19 18 17 45 45 H 1.48500 * 110.00430 * 180.02562 * 20 18 17 46 46 H 1.48500 * 110.00017 * 301.32427 * 20 18 17 47 47 H 1.07997 * 119.97527 * 180.22650 * 21 17 16 48 48 H 1.07992 * 119.97167 * 180.02562 * 26 22 21 49 49 H 1.07996 * 120.02261 * 180.02562 * 27 26 22 50 50 H 1.08996 * 113.61882 * 334.56342 * 28 9 8 51 51 H 1.09003 * 113.61401 * 105.38906 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5098 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.6741 -4.0671 2.5829 10 1 0.7574 -4.3156 2.0479 11 6 2.8211 -5.0617 2.3387 12 6 2.2773 -5.8613 3.5344 13 1 1.5262 -6.6023 3.2605 14 6 3.3715 -6.4310 4.4393 15 8 3.7797 -7.7088 3.9468 16 6 4.7518 -8.3561 4.6416 17 6 5.1921 -9.6031 4.2228 18 6 4.5932 -10.2414 2.9961 19 8 5.1037 -9.5978 1.8269 20 14 5.0409 -12.0493 2.9553 21 6 6.1836 -10.2573 4.9286 22 6 6.7297 -9.6744 6.0569 23 7 7.7874 -10.3801 6.8145 24 8 8.2689 -9.8678 7.8091 25 8 8.1762 -11.4731 6.4435 26 6 6.2892 -8.4335 6.4793 27 6 5.3015 -7.7734 5.7746 28 6 1.6807 -4.5396 4.0463 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 2.6299 -2.2378 3.0813 39 1 2.7454 -5.5909 1.3888 40 1 3.8106 -4.6380 2.5105 41 1 4.2261 -5.7544 4.4463 42 1 2.9852 -6.5388 5.4529 43 1 3.5086 -10.1363 3.0245 44 1 6.0649 -9.6518 1.7362 45 1 4.4568 -12.6903 1.7499 46 1 6.5175 -12.2068 2.9486 47 1 6.5293 -11.2265 4.6008 48 1 6.7177 -7.9802 7.3608 49 1 4.9581 -6.8042 6.1046 50 1 2.3584 -3.9731 4.6850 51 1 0.6843 -4.6459 4.4753 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29409_15734236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:13:45 Heat of formation + Delta-G solvation = -93.364871 kcal Electronic energy + Delta-G solvation = -34981.899622 eV Core-core repulsion = 30046.202529 eV Total energy + Delta-G solvation = -4935.697093 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.176 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.27536 -41.98769 -41.74627 -40.40699 -38.93160 -37.92660 -37.84953 -37.66726 -35.44270 -34.29077 -33.30127 -32.33106 -29.64507 -28.40666 -28.33479 -27.44262 -27.00975 -26.72018 -25.13987 -23.69416 -22.99821 -22.29839 -21.43528 -20.60057 -20.34965 -19.75484 -19.50391 -19.08550 -18.60326 -18.21031 -17.81205 -17.33665 -17.25978 -17.17631 -16.71516 -16.30711 -16.17760 -15.91405 -15.71752 -15.52997 -15.39707 -14.98807 -14.57291 -14.46258 -14.35923 -14.16728 -13.72511 -13.48240 -13.40819 -13.34651 -13.15525 -12.97822 -12.91361 -12.90034 -12.72816 -12.63808 -12.56962 -12.39802 -12.32612 -12.31958 -12.24154 -12.07113 -11.95886 -11.73393 -11.42962 -11.35627 -11.13878 -10.75822 -10.59553 -10.17849 -9.87537 -5.03316 -1.27291 -0.32811 0.21770 0.36147 1.14132 1.14655 1.47943 1.70051 1.79263 1.85562 2.04310 3.05525 3.12504 3.25072 3.35732 3.38493 3.41310 3.54798 3.65349 3.70752 3.73290 3.76744 3.78848 3.88435 3.90986 4.13935 4.16545 4.23496 4.30352 4.39473 4.48037 4.57303 4.57457 4.60531 4.64047 4.69104 4.71595 4.72754 4.77844 4.78807 4.83489 4.84293 4.93256 4.96398 5.03668 5.06140 5.16746 5.23208 5.26632 5.29279 5.47749 5.57619 6.00711 6.37811 6.38435 6.43612 7.31775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.688 5.688 9 C 0.130 3.870 10 H 0.101 0.899 11 C -0.148 4.148 12 C -0.099 4.099 13 H 0.105 0.895 14 C 0.055 3.945 15 O -0.297 6.297 16 C 0.216 3.784 17 C -0.154 4.154 18 C -0.058 4.058 19 O -0.537 6.537 20 Si 0.745 3.255 21 C -0.022 4.022 22 C -0.100 4.100 23 N 0.037 4.963 24 O -0.176 6.176 25 O -0.200 6.200 26 C 0.000 4.000 27 C -0.198 4.198 28 C -0.115 4.115 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.419 0.581 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.133 0.867 44 H 0.385 0.615 45 H -0.291 1.291 46 H -0.279 1.279 47 H 0.159 0.841 48 H 0.174 0.826 49 H 0.189 0.811 50 H 0.116 0.884 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 6.120 3.135 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.348 5.348 9 C 0.027 3.973 10 H 0.119 0.881 11 C -0.187 4.187 12 C -0.118 4.118 13 H 0.123 0.877 14 C -0.019 4.019 15 O -0.208 6.208 16 C 0.167 3.833 17 C -0.156 4.156 18 C -0.168 4.168 19 O -0.345 6.345 20 Si 0.650 3.350 21 C -0.040 4.040 22 C -0.184 4.184 23 N 0.549 4.451 24 O -0.391 6.391 25 O -0.408 6.408 26 C -0.019 4.019 27 C -0.216 4.216 28 C -0.153 4.153 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.256 0.744 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.151 0.849 44 H 0.234 0.766 45 H -0.218 1.218 46 H -0.206 1.206 47 H 0.177 0.823 48 H 0.191 0.809 49 H 0.206 0.794 50 H 0.135 0.865 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.061 5.702 1.593 7.788 hybrid contribution 1.488 0.415 -0.347 1.583 sum -3.573 6.116 1.246 7.192 Atomic orbital electron populations 1.22472 0.94014 1.03670 1.03549 1.22334 0.94470 0.92575 0.81482 1.21890 1.02436 0.90863 1.04283 1.22474 1.01581 1.02219 0.97482 1.86307 1.71527 1.23390 1.47191 1.18484 0.78609 0.80703 0.82721 1.90910 1.42457 1.71073 1.44295 1.44759 1.54676 1.12316 1.23022 1.22596 0.98704 0.77044 0.98986 0.88128 1.23625 0.99209 0.96819 0.99052 1.22259 0.97500 0.96353 0.95690 0.87682 1.23353 0.98210 0.81143 0.99221 1.86239 1.49615 1.33874 1.51051 1.19201 0.85594 0.89983 0.88572 1.19522 1.00157 0.94988 1.00885 1.24879 1.03295 1.06763 0.81817 1.86652 1.27947 1.77386 1.42483 0.94246 0.79721 0.74482 0.86591 1.20864 0.92237 1.00144 0.90798 1.21011 0.99183 0.98310 0.99904 1.43869 1.00708 1.00405 1.00151 1.94526 1.59381 1.69173 1.16001 1.94553 1.65462 1.07885 1.72899 1.21153 0.92366 0.89510 0.98864 1.21630 0.99895 1.03967 0.96150 1.23344 1.03688 0.93882 0.94426 0.91795 0.89562 0.91828 0.91207 0.88399 0.91051 0.91893 0.89535 0.92020 0.74391 0.92400 0.88609 0.89268 0.88211 0.84911 0.76618 1.21794 1.20569 0.82343 0.80909 0.79390 0.86531 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.45 8.37 71.98 0.60 0.16 16 2 C 0.13 0.28 1.13 -10.79 -0.01 0.27 16 3 C -0.14 0.39 8.85 71.98 0.64 1.03 16 4 C -0.18 -0.54 8.37 71.98 0.60 0.07 16 5 O -0.37 -1.53 9.94 -55.44 -0.55 -2.08 16 6 C 0.64 3.27 8.06 129.79 1.05 4.32 16 7 O -0.60 -6.64 11.48 19.80 0.23 -6.41 16 8 N -0.69 1.81 5.36 -567.61 -3.04 -1.23 16 9 C 0.13 -0.61 4.24 45.51 0.19 -0.41 16 10 H 0.10 0.01 7.47 -2.39 -0.02 -0.01 16 11 C -0.15 0.80 7.43 31.12 0.23 1.03 16 12 C -0.10 0.97 4.01 -10.27 -0.04 0.93 16 13 H 0.10 -0.85 8.14 -2.38 -0.02 -0.87 16 14 C 0.05 -0.65 4.58 71.98 0.33 -0.32 16 15 O -0.30 1.65 9.47 -92.37 -0.87 0.78 16 16 C 0.22 -1.14 6.66 22.51 0.15 -0.99 16 17 C -0.15 0.47 5.27 -19.77 -0.10 0.37 16 18 C -0.06 0.15 2.38 71.23 0.17 0.32 16 19 O -0.54 -0.34 12.88 -148.98 -1.92 -2.26 16 20 Si 0.74 -1.55 30.26 68.60 2.08 0.53 16 21 C -0.02 0.02 8.16 22.25 0.18 0.20 16 22 C -0.10 -0.14 6.85 36.39 0.25 0.11 16 23 N 0.04 0.31 4.45 -46.44 -0.21 0.10 16 24 O -0.18 -1.75 18.44 18.88 0.35 -1.41 16 25 O -0.20 -2.33 18.44 18.90 0.35 -1.99 16 26 C 0.00 0.00 9.55 22.26 0.21 0.21 16 27 C -0.20 1.72 9.04 22.37 0.20 1.93 16 28 C -0.12 1.38 7.39 31.12 0.23 1.61 16 29 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.06 0.50 5.88 -2.39 -0.01 0.48 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.10 -0.58 8.14 -2.39 -0.02 -0.59 16 34 H 0.07 -0.24 8.14 -2.39 -0.02 -0.25 16 35 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 36 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.42 -3.37 8.84 -92.70 -0.82 -4.18 16 39 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.10 -0.66 7.90 -2.39 -0.02 -0.68 16 41 H 0.09 -1.32 7.36 -2.39 -0.02 -1.33 16 42 H 0.10 -1.62 7.66 -2.38 -0.02 -1.63 16 43 H 0.13 -0.52 7.83 -2.39 -0.02 -0.53 16 44 H 0.38 -1.81 8.70 -74.05 -0.64 -2.45 16 45 H -0.29 -1.50 7.11 99.48 0.71 -0.80 16 46 H -0.28 -0.62 6.68 99.48 0.66 0.04 16 47 H 0.16 -0.08 4.41 -2.91 -0.01 -0.10 16 48 H 0.17 -1.29 7.60 -2.91 -0.02 -1.31 16 49 H 0.19 -2.98 6.30 -2.91 -0.02 -3.00 16 50 H 0.12 -1.89 8.08 -2.39 -0.02 -1.91 16 51 H 0.09 -1.19 8.14 -2.39 -0.02 -1.21 16 Total: 0.00 -23.96 420.18 0.81 -23.15 By element: Atomic # 1 Polarization: -19.54 SS G_CDS: -0.48 Total: -20.02 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.88 Total: 10.83 kcal Atomic # 7 Polarization: 2.12 SS G_CDS: -3.25 Total: -1.13 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -2.42 Total: -13.36 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.08 Total: 0.53 kcal Total: -23.96 0.81 -23.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_15734236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.215 kcal (2) G-P(sol) polarization free energy of solvation -23.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds