Wall clock time and date at job start Mon Mar 8 2021 14:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86309 * 109.46832 * 2 1 4 4 C 1.86297 * 109.47279 * 240.00157 * 2 1 3 5 5 C 1.86303 * 109.46986 * 119.99808 * 2 1 3 6 6 O 1.42897 * 109.46744 * 66.19829 * 5 2 1 7 7 C 1.35893 * 117.00168 * 77.75110 * 6 5 2 8 8 C 1.38714 * 120.05674 * 6.17635 * 7 6 5 9 9 C 1.38166 * 119.94568 * 179.97438 * 8 7 6 10 10 C 1.38247 * 120.05591 * 359.97438 * 9 8 7 11 11 N 1.47997 * 119.94338 * 180.02562 * 10 9 8 12 12 O 1.21800 * 120.00292 * 359.97438 * 11 10 9 13 13 O 1.21801 * 120.00264 * 180.02562 * 11 10 9 14 14 C 1.38292 * 120.10851 * 359.77286 * 10 9 8 15 15 C 1.38122 * 120.05540 * 0.50035 * 14 10 9 16 16 C 1.50702 * 120.02698 * 179.74478 * 15 14 10 17 17 O 1.42897 * 109.47462 * 254.73304 * 16 15 14 18 18 Si 1.86306 * 109.47007 * 14.73471 * 16 15 14 19 19 H 1.48496 * 109.47161 * 59.99419 * 18 16 15 20 20 H 1.48503 * 109.46693 * 299.99613 * 18 16 15 21 21 H 1.48498 * 109.47049 * 179.97438 * 18 16 15 22 22 H 1.08994 * 109.47347 * 300.00253 * 1 2 3 23 23 H 1.09003 * 109.47064 * 60.00079 * 1 2 3 24 24 H 1.08997 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46968 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.46824 * 299.99956 * 3 2 1 27 27 H 1.08994 * 109.46840 * 59.99827 * 3 2 1 28 28 H 1.09002 * 109.46795 * 294.74266 * 4 2 1 29 29 H 1.09001 * 109.47120 * 54.73557 * 4 2 1 30 30 H 1.08991 * 109.47150 * 174.74194 * 4 2 1 31 31 H 1.08995 * 109.46805 * 306.19732 * 5 2 1 32 32 H 1.09002 * 109.46803 * 186.19735 * 5 2 1 33 33 H 1.07998 * 120.02518 * 359.97438 * 8 7 6 34 34 H 1.07997 * 119.97306 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.96944 * 180.25649 * 14 10 9 36 36 H 1.09000 * 109.47214 * 134.72857 * 16 15 14 37 37 H 0.96699 * 114.00036 * 299.99989 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7566 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 8 2.1301 -2.2609 1.4507 7 6 2.8847 -3.0504 0.6421 8 6 4.0194 -2.5365 0.0316 9 6 4.7852 -3.3415 -0.7897 10 6 4.4218 -4.6582 -1.0029 11 7 5.2443 -5.5184 -1.8827 12 8 6.2401 -5.0660 -2.4186 13 8 4.9248 -6.6785 -2.0716 14 6 3.2940 -5.1743 -0.3913 15 6 2.5220 -4.3721 0.4262 16 6 1.2899 -4.9337 1.0878 17 8 0.1252 -4.4389 0.4240 18 14 1.3215 -6.7935 0.9828 19 1 2.5319 -7.3077 1.6726 20 1 1.3504 -7.2083 -0.4428 21 1 0.1078 -7.3468 1.6353 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.5740 1.7566 0.0005 26 1 2.1206 2.2703 -0.8900 27 1 2.1206 2.2703 0.8899 28 1 2.1997 -1.9294 -1.4753 29 1 2.0458 -0.4216 -2.4086 30 1 3.5699 -0.7973 -1.5694 31 1 2.0329 -0.4324 2.4076 32 1 3.5684 -0.7831 1.5784 33 1 4.3039 -1.5081 0.1981 34 1 5.6684 -2.9418 -1.2656 35 1 3.0145 -6.2045 -0.5561 36 1 1.2686 -4.6292 2.1342 37 1 0.0432 -3.4755 0.4392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_29409_3095236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:41:57 Heat of formation + Delta-G solvation = -78.646927 kcal Electronic energy + Delta-G solvation = -21437.901588 eV Core-core repulsion = 18115.104282 eV Total energy + Delta-G solvation = -3322.797307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.10753 -41.95254 -39.08998 -37.79557 -37.39994 -33.46170 -32.49521 -30.04726 -28.78767 -28.69302 -28.60935 -27.24247 -26.81885 -23.67114 -22.90333 -20.21568 -19.64046 -19.54210 -18.43204 -18.32159 -17.74760 -17.32358 -16.78167 -15.95760 -15.85607 -15.26830 -14.93482 -14.62152 -14.48816 -14.31543 -14.15053 -14.09751 -13.75974 -13.59108 -13.58730 -13.37168 -13.31286 -12.87379 -12.42514 -12.30171 -12.11929 -11.97850 -11.92809 -11.52373 -11.35766 -11.25974 -11.19349 -11.16617 -10.57854 -9.76374 -1.15353 -0.42109 0.31238 0.47171 1.04318 1.07104 1.26434 1.41482 1.42392 1.47248 1.85112 1.89274 1.97163 2.17213 2.99002 3.11930 3.36908 3.51313 3.68078 3.70263 3.79244 4.04011 4.13946 4.25034 4.39784 4.39981 4.42826 4.45867 4.47479 4.50782 4.52858 4.53549 4.57906 4.82507 5.17577 5.25990 5.29816 5.44184 5.69200 6.39309 6.75881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 0.994 3.006 3 C -0.449 4.449 4 C -0.456 4.456 5 C -0.255 4.255 6 O -0.279 6.279 7 C 0.190 3.810 8 C -0.202 4.202 9 C -0.009 4.009 10 C -0.077 4.077 11 N 0.033 4.967 12 O -0.159 6.159 13 O -0.162 6.162 14 C -0.022 4.022 15 C -0.148 4.148 16 C -0.081 4.081 17 O -0.531 6.531 18 Si 0.997 3.003 19 H -0.243 1.243 20 H -0.244 1.244 21 H -0.245 1.245 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.087 0.913 37 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 6.321 3.676 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.190 2.810 3 C -0.557 4.557 4 C -0.563 4.563 5 C -0.374 4.374 6 O -0.190 6.190 7 C 0.141 3.859 8 C -0.221 4.221 9 C -0.028 4.028 10 C -0.161 4.161 11 N 0.552 4.448 12 O -0.375 6.375 13 O -0.377 6.377 14 C -0.041 4.041 15 C -0.150 4.150 16 C -0.190 4.190 17 O -0.336 6.336 18 Si 0.816 3.184 19 H -0.166 1.166 20 H -0.167 1.167 21 H -0.169 1.169 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.138 0.862 32 H 0.098 0.902 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.105 0.895 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.417 5.152 4.131 7.032 hybrid contribution 0.641 1.306 -0.073 1.456 sum -1.776 6.458 4.058 7.831 Atomic orbital electron populations 1.26034 1.19352 1.05019 1.04983 0.79805 0.68848 0.67227 0.65159 1.26063 1.06449 1.17956 1.05269 1.26512 1.06429 1.08061 1.15324 1.28468 1.06496 0.83535 1.18923 1.86049 1.52157 1.20584 1.60162 1.19138 0.88967 0.90272 0.87492 1.21316 0.96377 1.02222 1.02166 1.20851 0.98735 0.89908 0.93351 1.20860 0.98036 0.92756 1.04424 1.43475 1.00453 1.01262 0.99640 1.94553 1.15588 1.77770 1.49567 1.94569 1.75372 1.01202 1.66580 1.20827 0.90574 1.01410 0.91255 1.19587 1.00533 0.91889 1.02969 1.25229 0.82704 1.13188 0.97830 1.86748 1.41276 1.26805 1.78806 0.84679 0.81623 0.70128 0.82013 1.16649 1.16723 1.16861 0.90863 0.90694 0.90772 0.90940 0.90373 0.90790 0.91135 0.90433 0.90722 0.86201 0.90214 0.82427 0.82241 0.82312 0.89477 0.78334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.74 8.65 101.05 0.87 2.61 16 2 Si 0.99 -5.45 11.68 -169.99 -1.99 -7.43 16 3 C -0.45 2.04 8.65 101.05 0.87 2.92 16 4 C -0.46 1.62 7.03 101.05 0.71 2.33 16 5 C -0.26 1.27 5.31 101.05 0.54 1.80 16 6 O -0.28 0.75 8.70 -19.41 -0.17 0.58 16 7 C 0.19 -0.30 5.09 -39.22 -0.20 -0.50 16 8 C -0.20 0.49 5.61 -39.43 -0.22 0.27 16 9 C -0.01 0.01 9.55 -39.60 -0.38 -0.37 16 10 C -0.08 -0.14 6.85 -79.94 -0.55 -0.69 16 11 N 0.03 0.15 4.45 33.97 0.15 0.30 16 12 O -0.16 -0.83 18.44 -29.46 -0.54 -1.38 16 13 O -0.16 -0.95 18.44 -29.46 -0.54 -1.49 16 14 C -0.02 -0.02 8.16 -39.60 -0.32 -0.35 16 15 C -0.15 0.03 5.28 -104.47 -0.55 -0.52 16 16 C -0.08 0.05 2.33 36.01 0.08 0.14 16 17 O -0.53 0.03 12.65 -35.23 -0.45 -0.42 16 18 Si 1.00 0.04 25.74 -169.99 -4.37 -4.34 16 19 H -0.24 0.04 7.11 56.52 0.40 0.44 16 20 H -0.24 -0.24 6.74 56.52 0.38 0.15 16 21 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 22 H 0.07 -0.29 7.96 -51.93 -0.41 -0.70 16 23 H 0.07 -0.26 7.96 -51.93 -0.41 -0.67 16 24 H 0.07 -0.28 7.96 -51.93 -0.41 -0.69 16 25 H 0.07 -0.34 7.96 -51.93 -0.41 -0.76 16 26 H 0.08 -0.31 7.96 -51.93 -0.41 -0.72 16 27 H 0.07 -0.34 7.96 -51.93 -0.41 -0.75 16 28 H 0.07 -0.16 6.25 -51.93 -0.32 -0.49 16 29 H 0.08 -0.24 7.96 -51.93 -0.41 -0.66 16 30 H 0.07 -0.30 6.54 -51.93 -0.34 -0.64 16 31 H 0.12 -0.72 7.96 -51.93 -0.41 -1.13 16 32 H 0.08 -0.47 6.08 -51.93 -0.32 -0.79 16 33 H 0.16 -0.84 4.74 -52.49 -0.25 -1.08 16 34 H 0.16 -0.35 7.60 -52.49 -0.40 -0.75 16 35 H 0.16 0.15 4.43 -52.49 -0.23 -0.08 16 36 H 0.09 -0.18 7.83 -51.93 -0.41 -0.59 16 37 H 0.37 -1.02 8.61 45.56 0.39 -0.62 16 LS Contribution 309.38 15.07 4.66 4.66 Total: 0.00 -5.83 309.38 -6.39 -12.22 By element: Atomic # 1 Polarization: -6.35 SS G_CDS: -4.00 Total: -10.35 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 0.86 Total: 7.64 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: 0.15 Total: 0.30 kcal Atomic # 8 Polarization: -1.01 SS G_CDS: -1.70 Total: -2.71 kcal Atomic # 14 Polarization: -5.41 SS G_CDS: -6.36 Total: -11.77 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -5.83 -6.39 -12.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_3095236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.425 kcal (2) G-P(sol) polarization free energy of solvation -5.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds