Wall clock time and date at job start Mon Mar 8 2021 16:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35979 * 117.00163 * 179.97438 * 3 2 1 5 5 C 1.38678 * 120.00042 * 179.97438 * 4 3 2 6 6 C 1.38149 * 119.99955 * 180.02562 * 5 4 3 7 7 C 1.50703 * 120.00134 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47167 * 105.00016 * 7 6 5 9 9 Si 1.86299 * 109.47165 * 344.99797 * 7 6 5 10 10 C 1.38682 * 119.99955 * 0.02562 * 6 5 4 11 11 O 1.35987 * 119.99597 * 179.97438 * 10 6 5 12 12 C 1.42908 * 116.99460 * 180.02562 * 11 10 6 13 13 C 1.52996 * 109.46683 * 180.02562 * 12 11 10 14 14 H 1.09001 * 112.85307 * 314.66239 * 13 12 11 15 15 C 1.53781 * 113.61679 * 85.86176 * 13 12 11 16 16 C 1.53960 * 87.02090 * 139.94792 * 15 13 12 17 17 H 1.09003 * 113.53631 * 89.18768 * 16 15 13 18 18 O 1.42899 * 113.74368 * 220.05882 * 16 15 13 19 19 C 1.53784 * 87.11226 * 334.63715 * 16 15 13 20 20 C 1.38714 * 120.00096 * 0.02562 * 10 6 5 21 21 C 1.38117 * 119.99884 * 359.71782 * 20 10 6 22 22 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 27 27 H 1.07997 * 120.00274 * 359.97438 * 5 4 3 28 28 H 1.09001 * 109.46900 * 225.00046 * 7 6 5 29 29 H 0.96695 * 114.00096 * 59.99826 * 8 7 6 30 30 H 1.48502 * 109.99927 * 300.00423 * 9 7 6 31 31 H 1.48504 * 109.99630 * 61.31969 * 9 7 6 32 32 H 1.09001 * 109.47071 * 299.99658 * 12 11 10 33 33 H 1.08998 * 109.47041 * 59.99561 * 12 11 10 34 34 H 1.08994 * 113.61520 * 254.52586 * 15 13 12 35 35 H 1.09003 * 113.61534 * 25.43175 * 15 13 12 36 36 H 0.96702 * 113.99478 * 277.59641 * 18 16 15 37 37 H 1.08996 * 113.61441 * 270.81567 * 19 16 15 38 38 H 1.08994 * 113.61462 * 139.90769 * 19 16 15 39 39 H 1.08001 * 120.00287 * 180.02562 * 20 10 6 40 40 H 1.07993 * 119.99768 * 180.29425 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 3.8845 2.8069 0.0000 6 6 5.2541 2.9879 0.0001 7 6 5.8301 4.3804 -0.0011 8 8 6.3343 4.6884 1.3001 9 14 4.4999 5.6024 -0.4570 10 6 6.0988 1.8880 0.0000 11 8 7.4470 2.0663 -0.0005 12 6 8.2569 0.8889 -0.0010 13 6 9.7344 1.2864 -0.0009 14 1 9.9597 2.0785 -0.7150 15 6 10.3029 1.5440 1.4045 16 6 11.5798 0.8252 0.9322 17 1 12.3105 1.4919 0.4741 18 8 12.1545 -0.0344 1.9185 19 6 10.6946 0.0882 -0.0867 20 6 5.5686 0.6062 -0.0005 21 6 4.1994 0.4253 0.0048 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2267 3.6634 -0.0012 28 1 6.6406 4.4377 -0.7277 29 1 7.0319 4.0913 1.6031 30 1 3.9673 5.2929 -1.8082 31 1 3.4036 5.5566 0.5438 32 1 8.0399 0.2982 0.8890 33 1 8.0391 0.2985 -0.8910 34 1 10.4527 2.6002 1.6281 35 1 9.7707 1.0144 2.1947 36 1 12.7124 0.4234 2.5622 37 1 10.2696 -0.8401 0.2949 38 1 11.1601 -0.0291 -1.0653 39 1 6.2265 -0.2503 -0.0001 40 1 3.7866 -0.5727 0.0092 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_508406_11354858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:36:42 Heat of formation + Delta-G solvation = -107.413085 kcal Electronic energy + Delta-G solvation = -22231.408462 eV Core-core repulsion = 18786.383537 eV Total energy + Delta-G solvation = -3445.024925 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75629 -40.67412 -39.83292 -38.10575 -36.96783 -36.04713 -32.90201 -32.70346 -30.40165 -28.97565 -26.90794 -26.80732 -24.61381 -24.29882 -22.78375 -22.06512 -20.67803 -19.42432 -18.81743 -18.63907 -17.99721 -17.51395 -17.19478 -16.98139 -16.41309 -16.05452 -15.90653 -15.40683 -15.23247 -14.97706 -14.55730 -14.41760 -14.17071 -13.77077 -13.58237 -13.55628 -13.33568 -13.26676 -13.00096 -12.68756 -12.46534 -12.33295 -12.14592 -12.00941 -11.89408 -11.49692 -11.25675 -11.09992 -10.94420 -10.85234 -10.09203 -8.78314 -4.73327 0.06699 0.37717 1.47014 1.75976 2.00039 2.07713 2.18561 2.56895 3.13408 3.32961 3.42530 3.53240 3.60259 3.68428 3.79246 3.89047 3.92868 3.96384 4.02672 4.06159 4.11149 4.13521 4.19957 4.26540 4.31988 4.41099 4.53612 4.62054 4.64250 4.65278 4.68185 4.77964 4.84766 4.98251 5.02982 5.05929 5.15311 5.21629 5.23633 5.44067 6.21612 6.42631 6.61296 6.67033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.104 3.896 5 C -0.117 4.117 6 C -0.104 4.104 7 C -0.072 4.072 8 O -0.534 6.534 9 Si 0.745 3.255 10 C 0.106 3.894 11 O -0.311 6.311 12 C 0.072 3.928 13 C -0.109 4.109 14 H 0.106 0.894 15 C -0.163 4.163 16 C 0.076 3.924 17 H 0.085 0.915 18 O -0.560 6.560 19 C -0.120 4.120 20 C -0.163 4.163 21 C -0.164 4.164 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.137 0.863 28 H 0.077 0.923 29 H 0.366 0.634 30 H -0.249 1.249 31 H -0.251 1.251 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.381 0.619 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 -1.053 -0.997 2.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.059 3.941 5 C -0.135 4.135 6 C -0.105 4.105 7 C -0.180 4.180 8 O -0.339 6.339 9 Si 0.644 3.356 10 C 0.061 3.939 11 O -0.226 6.226 12 C -0.003 4.003 13 C -0.127 4.127 14 H 0.124 0.876 15 C -0.201 4.201 16 C 0.017 3.983 17 H 0.103 0.897 18 O -0.366 6.366 19 C -0.158 4.158 20 C -0.182 4.182 21 C -0.183 4.183 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.095 0.905 29 H 0.214 0.786 30 H -0.174 1.174 31 H -0.176 1.176 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.229 0.771 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.152 0.848 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.376 -0.619 -1.589 1.746 hybrid contribution 0.889 -1.919 0.480 2.169 sum 1.265 -2.538 -1.109 3.045 Atomic orbital electron populations 1.21787 0.92360 1.03140 1.03753 1.22830 0.96239 0.81643 1.01405 1.86104 1.18403 1.29610 1.88882 1.18730 0.82803 0.93495 0.99055 1.20104 0.93581 0.95400 1.04422 1.19464 0.91580 0.94989 1.04444 1.25169 1.06555 0.97619 0.88708 1.86715 1.58106 1.57204 1.31863 0.93307 0.75142 0.88077 0.79119 1.18589 0.82873 0.92795 0.99642 1.86029 1.13599 1.33964 1.88971 1.22821 0.89435 0.86470 1.01613 1.22322 0.91441 0.99750 0.99194 0.87596 1.23798 0.97724 1.01794 0.96747 1.23321 0.92758 0.92220 0.89998 0.89721 1.86521 1.68629 1.37731 1.43724 1.23065 0.95612 0.97815 0.99301 1.21080 0.95689 0.96053 1.05355 1.21098 0.93421 0.98386 1.05413 0.91373 0.90104 0.91353 0.91953 0.91937 0.84567 0.90474 0.78632 1.17358 1.17626 0.91670 0.91709 0.90593 0.89105 0.77130 0.88868 0.90103 0.84778 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 10.28 37.16 0.38 0.52 16 2 C 0.05 0.01 5.46 37.16 0.20 0.22 16 3 O -0.32 -1.14 10.14 -19.67 -0.20 -1.34 16 4 C 0.10 0.39 6.69 -39.24 -0.26 0.13 16 5 C -0.12 -0.50 8.59 -39.45 -0.34 -0.84 16 6 C -0.10 -0.36 5.27 -104.49 -0.55 -0.91 16 7 C -0.07 -0.16 2.33 36.01 0.08 -0.07 16 8 O -0.53 -1.44 12.65 -35.23 -0.45 -1.88 16 9 Si 0.75 0.92 30.40 -169.99 -5.17 -4.25 16 10 C 0.11 0.27 6.62 -39.24 -0.26 0.01 16 11 O -0.31 -0.40 9.03 -19.70 -0.18 -0.58 16 12 C 0.07 -0.06 4.57 37.16 0.17 0.11 16 13 C -0.11 0.17 4.00 -89.80 -0.36 -0.19 16 14 H 0.11 -0.18 8.14 -51.93 -0.42 -0.60 16 15 C -0.16 0.23 7.48 -25.82 -0.19 0.04 16 16 C 0.08 -0.09 5.21 -25.82 -0.13 -0.23 16 17 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 18 O -0.56 -0.13 13.68 -35.23 -0.48 -0.61 16 19 C -0.12 0.17 7.48 -25.91 -0.19 -0.03 16 20 C -0.16 -0.26 9.03 -39.45 -0.36 -0.61 16 21 C -0.16 -0.32 9.03 -39.45 -0.36 -0.67 16 22 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 23 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 24 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 25 H 0.06 -0.05 7.67 -51.93 -0.40 -0.45 16 26 H 0.06 -0.05 7.65 -51.93 -0.40 -0.45 16 27 H 0.14 0.58 4.93 -52.49 -0.26 0.32 16 28 H 0.08 0.09 7.82 -51.93 -0.41 -0.32 16 29 H 0.37 0.29 8.60 45.56 0.39 0.68 16 30 H -0.25 -0.67 7.11 56.52 0.40 -0.27 16 31 H -0.25 -0.96 6.81 56.52 0.38 -0.57 16 32 H 0.07 -0.08 7.39 -51.93 -0.38 -0.46 16 33 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 34 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 35 H 0.09 -0.06 7.92 -51.93 -0.41 -0.47 16 36 H 0.38 -1.40 9.12 45.56 0.42 -0.99 16 37 H 0.09 -0.08 8.10 -51.93 -0.42 -0.50 16 38 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 39 H 0.13 -0.08 6.29 -52.49 -0.33 -0.42 16 40 H 0.13 -0.04 6.29 -52.49 -0.33 -0.37 16 LS Contribution 328.31 15.07 4.95 4.95 Total: 0.00 -6.11 328.31 -8.79 -14.90 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: -5.10 Total: -8.66 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.17 Total: -2.52 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -1.31 Total: -4.42 kcal Atomic # 14 Polarization: 0.92 SS G_CDS: -5.17 Total: -4.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -6.11 -8.79 -14.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_508406_11354858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.509 kcal (2) G-P(sol) polarization free energy of solvation -6.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds