Wall clock time and date at job start Mon Mar 8 2021 15:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35979 * 117.00163 * 179.97438 * 3 2 1 5 5 C 1.38678 * 120.00107 * 179.72429 * 4 3 2 6 6 C 1.38152 * 119.99645 * 179.74677 * 5 4 3 7 7 C 1.50707 * 119.99601 * 180.23353 * 6 5 4 8 8 O 1.42901 * 109.46997 * 255.27319 * 7 6 5 9 9 Si 1.86293 * 109.47372 * 15.27265 * 7 6 5 10 10 C 1.38670 * 120.00207 * 0.50472 * 6 5 4 11 11 O 1.35988 * 119.99698 * 179.74675 * 10 6 5 12 12 C 1.42902 * 116.99538 * 180.02562 * 11 10 6 13 13 C 1.53000 * 109.47047 * 179.97438 * 12 11 10 14 14 H 1.09000 * 112.84842 * 43.80635 * 13 12 11 15 15 C 1.53789 * 113.61659 * 175.00063 * 13 12 11 16 16 C 1.53775 * 87.07930 * 139.98305 * 15 13 12 17 17 H 1.08999 * 113.61740 * 89.12412 * 16 15 13 18 18 O 1.42904 * 113.61277 * 220.01837 * 16 15 13 19 19 C 1.42901 * 114.00194 * 210.00028 * 18 16 15 20 20 C 1.53005 * 109.46781 * 60.00126 * 19 18 16 21 21 C 1.52995 * 109.46964 * 179.97438 * 19 18 16 22 22 C 1.52999 * 109.46996 * 300.00297 * 19 18 16 23 23 C 1.53774 * 113.61582 * 272.49699 * 13 12 11 24 24 C 1.38714 * 120.00074 * 359.77170 * 10 6 5 25 25 C 1.38113 * 120.00104 * 359.97438 * 24 10 6 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.07999 * 119.99729 * 359.97438 * 5 4 3 32 32 H 1.09001 * 109.46918 * 135.27939 * 7 6 5 33 33 H 0.96702 * 114.00253 * 59.99966 * 8 7 6 34 34 H 1.48505 * 109.99968 * 58.68000 * 9 7 6 35 35 H 1.48495 * 110.00146 * 180.02562 * 9 7 6 36 36 H 1.09003 * 109.47501 * 300.00071 * 12 11 10 37 37 H 1.09005 * 109.47570 * 60.00049 * 12 11 10 38 38 H 1.08996 * 113.60982 * 254.53508 * 15 13 12 39 39 H 1.08997 * 113.61175 * 25.34564 * 15 13 12 40 40 H 1.08996 * 109.47161 * 60.00160 * 20 19 18 41 41 H 1.09003 * 109.47059 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.46980 * 299.99872 * 20 19 18 43 43 H 1.09002 * 109.47234 * 60.00854 * 21 19 18 44 44 H 1.09007 * 109.47236 * 180.02562 * 21 19 18 45 45 H 1.08996 * 109.47633 * 300.00241 * 21 19 18 46 46 H 1.08997 * 109.47040 * 59.99915 * 22 19 18 47 47 H 1.09007 * 109.46778 * 180.02562 * 22 19 18 48 48 H 1.08995 * 109.46989 * 299.99162 * 22 19 18 49 49 H 1.09001 * 113.61963 * 334.56923 * 23 13 12 50 50 H 1.09010 * 113.61556 * 105.47184 * 23 13 12 51 51 H 1.08007 * 120.00301 * 179.97438 * 24 10 6 52 52 H 1.08003 * 119.99972 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 3.8845 2.8069 -0.0052 6 6 5.2541 2.9878 0.0006 7 6 5.8302 4.3804 -0.0003 8 8 6.3347 4.6863 -1.3018 9 14 4.4997 5.6031 0.4531 10 6 6.0988 1.8880 0.0017 11 8 7.4470 2.0663 0.0022 12 6 8.2569 0.8889 0.0027 13 6 9.7344 1.2863 0.0026 14 1 9.9548 2.0966 0.6976 15 6 10.6939 0.0909 0.1259 16 6 11.5862 0.8015 -0.9054 17 1 12.3138 1.4797 -0.4597 18 8 12.1662 -0.0829 -1.8664 19 6 13.4345 0.3494 -2.3630 20 6 14.4240 0.4660 -1.2018 21 6 13.9583 -0.6681 -3.3785 22 6 13.2795 1.7128 -3.0398 23 6 10.3134 1.5051 -1.4051 24 6 5.5686 0.6062 0.0016 25 6 4.1994 0.4253 0.0011 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2266 3.6633 -0.0105 32 1 6.6405 4.4389 0.7264 33 1 5.6668 4.6533 -2.0004 34 1 3.9446 5.2767 1.7913 35 1 5.0549 6.9804 0.4551 36 1 8.0392 0.2984 0.8927 37 1 8.0399 0.2982 -0.8873 38 1 11.1525 -0.0011 1.1104 39 1 10.2710 -0.8473 -0.2333 40 1 14.5345 -0.5053 -0.7197 41 1 15.3914 0.7962 -1.5805 42 1 14.0510 1.1907 -0.4781 43 1 13.2535 -0.7516 -4.2058 44 1 14.9260 -0.3387 -3.7570 45 1 14.0688 -1.6392 -2.8960 46 1 12.9065 2.4374 -2.3160 47 1 14.2469 2.0422 -3.4191 48 1 12.5747 1.6296 -3.8671 49 1 9.7870 0.9539 -2.1843 50 1 10.4650 2.5549 -1.6566 51 1 6.2265 -0.2504 0.0020 52 1 3.7866 -0.5728 0.0006 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_508406_14598384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:49:31 Heat of formation + Delta-G solvation = -102.216256 kcal Electronic energy + Delta-G solvation = -29759.396747 eV Core-core repulsion = 25692.446697 eV Total energy + Delta-G solvation = -4066.950050 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.202 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.72386 -40.95315 -40.02756 -38.67195 -37.86742 -36.93852 -33.92672 -32.83901 -32.64162 -30.36603 -29.07018 -28.37708 -28.24756 -26.94377 -26.63588 -24.54123 -24.27606 -22.84560 -22.06149 -20.83959 -20.61174 -19.47675 -18.76117 -18.06488 -17.68612 -17.24545 -17.05298 -16.87435 -16.56394 -16.12628 -16.03432 -15.82878 -15.63511 -15.23898 -15.01587 -14.54522 -14.49094 -14.45525 -14.17825 -14.15018 -13.62647 -13.46371 -13.39127 -13.36215 -13.25734 -13.14503 -12.93830 -12.81492 -12.76490 -12.66227 -12.40898 -12.29722 -12.17482 -12.08146 -11.97029 -11.75361 -11.65503 -11.45537 -11.28624 -11.12991 -10.40345 -10.38426 -10.12138 -8.77142 -5.01965 0.05525 0.37242 1.28364 1.63292 1.93107 2.10436 2.25262 2.55674 2.73398 3.44514 3.48987 3.54067 3.64763 3.73775 3.75238 3.78951 3.89088 3.96063 4.03731 4.07346 4.07530 4.07953 4.10022 4.15085 4.24481 4.31979 4.36253 4.40479 4.44496 4.51513 4.59795 4.64744 4.68776 4.75071 4.75681 4.76685 4.82137 4.83419 4.89751 4.91915 4.96463 4.98475 5.01831 5.10565 5.14915 5.15568 5.20622 5.29122 5.29705 5.31134 5.36279 5.47285 6.29823 6.39125 6.48059 6.78481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.328 6.328 4 C 0.088 3.912 5 C -0.115 4.115 6 C -0.125 4.125 7 C -0.060 4.060 8 O -0.550 6.550 9 Si 0.773 3.227 10 C 0.103 3.897 11 O -0.319 6.319 12 C 0.069 3.931 13 C -0.103 4.103 14 H 0.101 0.899 15 C -0.120 4.120 16 C 0.061 3.939 17 H 0.098 0.902 18 O -0.380 6.380 19 C 0.098 3.902 20 C -0.177 4.177 21 C -0.139 4.139 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.173 4.173 25 C -0.162 4.162 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.098 0.902 33 H 0.392 0.608 34 H -0.288 1.288 35 H -0.292 1.292 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.081 0.919 50 H 0.066 0.934 51 H 0.148 0.852 52 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -3.308 -0.903 3.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.243 6.243 4 C 0.043 3.957 5 C -0.133 4.133 6 C -0.126 4.126 7 C -0.169 4.169 8 O -0.357 6.357 9 Si 0.678 3.322 10 C 0.057 3.943 11 O -0.233 6.233 12 C -0.005 4.005 13 C -0.122 4.122 14 H 0.119 0.881 15 C -0.157 4.157 16 C 0.003 3.997 17 H 0.116 0.884 18 O -0.300 6.300 19 C 0.059 3.941 20 C -0.234 4.234 21 C -0.196 4.196 22 C -0.231 4.231 23 C -0.183 4.183 24 C -0.191 4.191 25 C -0.181 4.181 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.174 0.826 32 H 0.116 0.884 33 H 0.241 0.759 34 H -0.215 1.215 35 H -0.219 1.219 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.075 0.925 49 H 0.100 0.900 50 H 0.084 0.916 51 H 0.165 0.835 52 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.066 -2.506 -0.085 2.725 hybrid contribution 0.686 -0.591 0.330 0.964 sum -0.380 -3.097 0.244 3.130 Atomic orbital electron populations 1.21807 0.91828 1.03994 1.03265 1.23026 0.96687 0.80885 1.02217 1.86078 1.18244 1.30989 1.89027 1.18885 0.83072 0.93915 0.99808 1.20209 0.92992 0.95902 1.04182 1.19546 0.91773 0.95258 1.06054 1.25011 1.06167 0.96717 0.89043 1.86503 1.40703 1.91927 1.16606 0.93885 0.80549 0.74418 0.83333 1.18858 0.83191 0.93407 0.98845 1.86133 1.13886 1.34631 1.88623 1.22909 0.89411 0.86219 1.02004 1.22241 0.91442 0.99868 0.98625 0.88070 1.23188 0.95405 0.97604 0.99541 1.23648 0.93204 0.92701 0.90142 0.88401 1.88006 1.34785 1.48308 1.58881 1.21682 0.83550 0.94770 0.94076 1.22449 0.99964 1.02613 0.98370 1.21790 1.01455 0.98481 0.97873 1.22444 1.03058 0.96454 1.01176 1.23550 0.97161 1.00938 0.96686 1.21304 0.96185 0.96184 1.05443 1.21341 0.93203 0.99206 1.04340 0.91671 0.88630 0.91966 0.90980 0.91289 0.82570 0.88441 0.75897 1.21465 1.21927 0.90844 0.91418 0.89412 0.88913 0.92006 0.90400 0.91999 0.92407 0.89733 0.92141 0.92359 0.90517 0.92497 0.90048 0.91554 0.83452 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.65 10.28 71.98 0.74 1.39 16 2 C 0.05 -0.11 5.46 71.98 0.39 0.28 16 3 O -0.33 -1.09 10.14 -93.32 -0.95 -2.04 16 4 C 0.09 0.33 6.69 22.49 0.15 0.48 16 5 C -0.11 -0.37 8.59 22.35 0.19 -0.18 16 6 C -0.13 -0.63 5.27 -19.78 -0.10 -0.73 16 7 C -0.06 -0.27 2.37 71.24 0.17 -0.10 16 8 O -0.55 -2.71 12.88 -148.98 -1.92 -4.63 16 9 Si 0.77 1.14 29.92 68.60 2.05 3.19 16 10 C 0.10 0.62 6.66 22.49 0.15 0.77 16 11 O -0.32 -2.18 9.46 -93.42 -0.88 -3.07 16 12 C 0.07 0.09 4.58 71.98 0.33 0.42 16 13 C -0.10 -0.06 4.01 -10.27 -0.04 -0.10 16 14 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 15 C -0.12 0.10 7.47 31.12 0.23 0.33 16 16 C 0.06 0.08 2.82 31.12 0.09 0.17 16 17 H 0.10 -0.03 5.55 -2.39 -0.01 -0.04 16 18 O -0.38 -1.78 10.00 -148.98 -1.49 -3.27 16 19 C 0.10 0.13 1.11 -10.79 -0.01 0.12 16 20 C -0.18 0.16 8.38 71.98 0.60 0.76 16 21 C -0.14 -0.03 8.84 71.98 0.64 0.61 16 22 C -0.17 -0.06 8.39 71.98 0.60 0.54 16 23 C -0.15 -0.35 7.46 31.12 0.23 -0.11 16 24 C -0.17 -0.46 9.03 22.35 0.20 -0.26 16 25 C -0.16 -0.27 9.03 22.35 0.20 -0.06 16 26 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.10 -0.73 8.14 -2.39 -0.02 -0.74 16 28 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 30 H 0.07 -0.29 7.66 -2.39 -0.02 -0.30 16 31 H 0.16 -0.15 5.14 -2.91 -0.01 -0.17 16 32 H 0.10 0.72 7.82 -2.39 -0.02 0.70 16 33 H 0.39 -1.35 8.70 -74.06 -0.64 -2.00 16 34 H -0.29 -1.93 7.11 99.48 0.71 -1.22 16 35 H -0.29 -2.27 7.11 99.48 0.71 -1.57 16 36 H 0.07 -0.09 7.66 -2.39 -0.02 -0.11 16 37 H 0.07 0.03 7.36 -2.38 -0.02 0.01 16 38 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.09 -0.05 8.10 -2.39 -0.02 -0.07 16 40 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.06 -0.09 6.25 -2.39 -0.01 -0.10 16 43 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.08 -0.23 8.14 -2.38 -0.02 -0.25 16 45 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.06 0.03 7.02 -2.39 -0.02 0.01 16 47 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 48 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 49 H 0.08 0.34 7.90 -2.39 -0.02 0.32 16 50 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 51 H 0.15 -0.19 6.29 -2.91 -0.02 -0.21 16 52 H 0.15 -0.47 6.29 -2.91 -0.02 -0.48 16 Total: 0.00 -14.59 408.30 1.87 -12.72 By element: Atomic # 1 Polarization: -7.53 SS G_CDS: 0.29 Total: -7.24 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 4.77 Total: 4.33 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -5.24 Total: -13.00 kcal Atomic # 14 Polarization: 1.14 SS G_CDS: 2.05 Total: 3.19 kcal Total: -14.59 1.87 -12.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_508406_14598384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.499 kcal (2) G-P(sol) polarization free energy of solvation -14.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds