Wall clock time and date at job start Mon Mar 8 2021 17:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47362 * 2 1 4 4 C 1.35986 * 117.00043 * 180.02562 * 3 2 1 5 5 C 1.38673 * 119.99827 * 179.72979 * 4 3 2 6 6 C 1.38155 * 119.99969 * 179.74027 * 5 4 3 7 7 C 1.50697 * 120.00219 * 180.22993 * 6 5 4 8 8 O 1.42901 * 109.46917 * 255.27463 * 7 6 5 9 9 Si 1.86299 * 109.47229 * 15.27233 * 7 6 5 10 10 C 1.38679 * 119.99633 * 0.50118 * 6 5 4 11 11 O 1.35986 * 119.99916 * 179.74717 * 10 6 5 12 12 C 1.42901 * 116.99807 * 180.02562 * 11 10 6 13 13 C 1.53002 * 109.46995 * 180.02562 * 12 11 10 14 14 H 1.09000 * 112.84885 * 316.19494 * 13 12 11 15 15 C 1.53785 * 113.61507 * 87.50079 * 13 12 11 16 16 C 1.53776 * 87.07765 * 89.11589 * 15 13 12 17 17 O 1.42897 * 113.61591 * 270.88315 * 16 15 13 18 18 C 1.42905 * 114.00086 * 162.82778 * 17 16 15 19 19 C 1.53007 * 113.68983 * 139.99116 * 16 15 13 20 20 F 1.39901 * 109.47078 * 327.01968 * 19 16 15 21 21 F 1.39902 * 109.46923 * 87.01541 * 19 16 15 22 22 F 1.39894 * 109.47429 * 207.01671 * 19 16 15 23 23 C 1.53781 * 113.61462 * 185.00132 * 13 12 11 24 24 C 1.38718 * 120.00189 * 359.77174 * 10 6 5 25 25 C 1.38108 * 120.00024 * 359.97438 * 24 10 6 26 26 H 1.09006 * 109.47052 * 59.99909 * 1 2 3 27 27 H 1.08994 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47206 * 300.00058 * 1 2 3 29 29 H 1.09000 * 109.47206 * 239.99942 * 2 1 3 30 30 H 1.08994 * 109.47254 * 120.00493 * 2 1 3 31 31 H 1.08005 * 120.00288 * 359.97438 * 5 4 3 32 32 H 1.09005 * 109.47018 * 135.27481 * 7 6 5 33 33 H 0.96698 * 114.00073 * 59.99709 * 8 7 6 34 34 H 1.48506 * 109.99623 * 58.68199 * 9 7 6 35 35 H 1.48500 * 110.00021 * 179.97438 * 9 7 6 36 36 H 1.08991 * 109.47233 * 299.99937 * 12 11 10 37 37 H 1.08995 * 109.47106 * 60.00041 * 12 11 10 38 38 H 1.08993 * 113.61242 * 203.66601 * 15 13 12 39 39 H 1.08997 * 113.61443 * 334.56933 * 15 13 12 40 40 H 1.09010 * 109.46789 * 303.09048 * 18 17 16 41 41 H 1.08997 * 109.47550 * 63.08725 * 18 17 16 42 42 H 1.08999 * 109.47185 * 183.09518 * 18 17 16 43 43 H 1.08995 * 113.61256 * 25.42769 * 23 13 12 44 44 H 1.08997 * 113.61001 * 156.33635 * 23 13 12 45 45 H 1.08003 * 120.00172 * 179.97438 * 24 10 6 46 46 H 1.07995 * 120.00484 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5254 -0.0005 5 6 3.8845 2.8068 -0.0062 6 6 5.2542 2.9878 -0.0014 7 6 5.8302 4.3804 -0.0023 8 8 6.3337 4.6866 -1.3041 9 14 4.5001 5.6030 0.4524 10 6 6.0989 1.8880 -0.0013 11 8 7.4470 2.0661 -0.0017 12 6 8.2570 0.8888 -0.0021 13 6 9.7345 1.2862 -0.0019 14 1 9.9549 2.0965 -0.6968 15 6 10.3133 1.5050 1.4059 16 6 10.6612 0.0071 1.4100 17 8 9.6135 -0.8226 1.9158 18 6 9.7507 -2.2039 1.5764 19 6 12.0219 -0.3063 2.0358 20 9 12.9068 0.7463 1.7790 21 9 11.8741 -0.4647 3.4179 22 9 12.5287 -1.4871 1.4827 23 6 10.6939 0.0908 -0.1252 24 6 5.5687 0.6062 -0.0013 25 6 4.1995 0.4252 -0.0009 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.2267 3.6634 -0.0107 32 1 6.6410 4.4387 0.7239 33 1 5.6653 4.6538 -2.0021 34 1 3.9461 5.2762 1.7909 35 1 5.0556 6.9801 0.4556 36 1 8.0399 0.2981 0.8877 37 1 8.0393 0.2984 -0.8921 38 1 11.1871 2.1562 1.4223 39 1 9.5643 1.7812 2.1480 40 1 9.8075 -2.3079 0.4928 41 1 10.6603 -2.6004 2.0276 42 1 8.8890 -2.7572 1.9498 43 1 10.2521 -0.7745 -0.6191 44 1 11.6718 0.3556 -0.5273 45 1 6.2265 -0.2504 -0.0017 46 1 3.7866 -0.5727 -0.0005 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_508406_17321600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:25:05 Heat of formation + Delta-G solvation = -234.114911 kcal Electronic energy + Delta-G solvation = -34275.662589 eV Core-core repulsion = 29105.706296 eV Total energy + Delta-G solvation = -5169.956293 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.29262 -48.82576 -48.76496 -41.85926 -41.27680 -39.93396 -38.28217 -37.20752 -36.78803 -32.81181 -32.64589 -30.86902 -29.59278 -28.20294 -27.34080 -26.92675 -26.75467 -24.40237 -23.90278 -22.91281 -22.03782 -20.56677 -19.89350 -19.58935 -19.41783 -19.26803 -18.68188 -17.91380 -17.33476 -17.20917 -16.99970 -16.71703 -16.49753 -16.07538 -15.94762 -15.76405 -15.67730 -15.61256 -15.53088 -15.20717 -15.18623 -14.97156 -14.93662 -14.70833 -14.40784 -14.27034 -14.15400 -14.08230 -13.68242 -13.41981 -13.31729 -13.22026 -12.95758 -12.79002 -12.67413 -12.35823 -12.25700 -12.08691 -12.02511 -11.88988 -11.71325 -11.56372 -11.26358 -10.81633 -10.37918 -10.08949 -8.74016 -5.00713 0.08732 0.40400 1.30358 1.49636 1.64638 1.95198 2.03627 2.10165 2.26936 2.53139 2.58505 2.59795 2.86766 3.28111 3.36955 3.46683 3.52006 3.63516 3.75949 3.81347 4.07424 4.08949 4.11462 4.14576 4.22562 4.25190 4.29426 4.33757 4.37658 4.41495 4.43288 4.47198 4.50462 4.62037 4.67837 4.70881 4.78214 4.80067 4.83881 4.97515 5.00393 5.06486 5.17829 5.23378 5.31358 5.49474 5.68622 6.32299 6.50495 6.81743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.329 6.329 4 C 0.088 3.912 5 C -0.116 4.116 6 C -0.125 4.125 7 C -0.057 4.057 8 O -0.548 6.548 9 Si 0.769 3.231 10 C 0.105 3.895 11 O -0.317 6.317 12 C 0.068 3.932 13 C -0.093 4.093 14 H 0.109 0.891 15 C -0.116 4.116 16 C 0.039 3.961 17 O -0.345 6.345 18 C 0.003 3.997 19 C 0.432 3.568 20 F -0.177 7.177 21 F -0.189 7.189 22 F -0.183 7.183 23 C -0.132 4.132 24 C -0.170 4.170 25 C -0.162 4.162 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.392 0.608 34 H -0.290 1.290 35 H -0.292 1.292 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.122 0.878 45 H 0.149 0.851 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 -4.472 -4.391 7.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.244 6.244 4 C 0.043 3.957 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.167 4.167 8 O -0.356 6.356 9 Si 0.675 3.325 10 C 0.060 3.940 11 O -0.231 6.231 12 C -0.007 4.007 13 C -0.111 4.111 14 H 0.127 0.873 15 C -0.153 4.153 16 C -0.004 4.004 17 O -0.263 6.263 18 C -0.092 4.092 19 C 0.378 3.622 20 F -0.159 7.159 21 F -0.170 7.170 22 F -0.165 7.165 23 C -0.169 4.169 24 C -0.188 4.188 25 C -0.181 4.181 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.173 0.827 32 H 0.117 0.883 33 H 0.241 0.759 34 H -0.217 1.217 35 H -0.220 1.220 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.140 0.860 45 H 0.167 0.833 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.851 -3.449 -3.374 6.173 hybrid contribution 1.236 -1.166 0.658 1.822 sum -2.616 -4.615 -2.716 5.959 Atomic orbital electron populations 1.21809 0.91932 1.03963 1.03231 1.23017 0.96612 0.80907 1.02230 1.86080 1.18336 1.30969 1.89049 1.18892 0.83044 0.93949 0.99853 1.20204 0.93053 0.95874 1.04286 1.19525 0.91727 0.95253 1.06075 1.24947 1.06028 0.96595 0.89138 1.86498 1.40646 1.91919 1.16524 0.93967 0.80626 0.74580 0.83348 1.18801 0.83056 0.93337 0.98825 1.86089 1.13882 1.34454 1.88676 1.22825 0.88658 0.86259 1.02944 1.22013 0.92005 0.99560 0.97541 0.87318 1.23313 1.03430 0.89770 0.98767 1.24143 0.83234 0.96310 0.96710 1.88078 1.42453 1.19749 1.76052 1.23306 1.03821 0.80033 1.02024 1.21532 0.89575 0.74336 0.76785 1.93172 1.71487 1.57407 1.93786 1.93187 1.95926 1.95386 1.32507 1.93180 1.89371 1.48699 1.85212 1.23617 1.02319 1.00005 0.90941 1.21292 0.96092 0.96195 1.05251 1.21337 0.93261 0.99140 1.04356 0.91661 0.88655 0.92055 0.90867 0.91346 0.82732 0.88307 0.75855 1.21727 1.21982 0.90299 0.90368 0.86042 0.89515 0.90918 0.93793 0.86786 0.87241 0.85967 0.83346 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.72 10.28 71.98 0.74 1.46 16 2 C 0.05 -0.15 5.46 71.98 0.39 0.25 16 3 O -0.33 -0.87 10.14 -93.39 -0.95 -1.82 16 4 C 0.09 0.25 6.69 22.49 0.15 0.40 16 5 C -0.12 -0.27 8.59 22.35 0.19 -0.08 16 6 C -0.12 -0.47 5.27 -19.78 -0.10 -0.58 16 7 C -0.06 -0.20 2.37 71.23 0.17 -0.03 16 8 O -0.55 -1.82 12.88 -148.98 -1.92 -3.74 16 9 Si 0.77 0.81 29.92 68.60 2.05 2.87 16 10 C 0.11 0.46 6.66 22.49 0.15 0.61 16 11 O -0.32 -1.45 9.46 -93.40 -0.88 -2.33 16 12 C 0.07 -0.09 4.32 71.98 0.31 0.22 16 13 C -0.09 0.28 4.20 -10.27 -0.04 0.23 16 14 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 15 C -0.12 0.12 6.89 31.12 0.21 0.33 16 16 C 0.04 -0.03 0.84 -10.27 -0.01 -0.04 16 17 O -0.35 -0.06 8.36 -148.98 -1.25 -1.30 16 18 C 0.00 -0.01 10.33 113.37 1.17 1.16 16 19 C 0.43 1.24 2.52 71.98 0.18 1.42 16 20 F -0.18 -0.57 15.82 44.97 0.71 0.14 16 21 F -0.19 -1.33 17.11 44.97 0.77 -0.56 16 22 F -0.18 -0.52 15.34 44.97 0.69 0.17 16 23 C -0.13 0.71 6.52 31.12 0.20 0.91 16 24 C -0.17 -0.17 9.03 22.35 0.20 0.03 16 25 C -0.16 -0.06 9.03 22.35 0.20 0.14 16 26 H 0.06 -0.26 8.14 -2.38 -0.02 -0.28 16 27 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 28 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.07 -0.40 7.66 -2.39 -0.02 -0.42 16 30 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 31 H 0.16 -0.24 5.14 -2.91 -0.01 -0.25 16 32 H 0.10 0.62 7.82 -2.38 -0.02 0.60 16 33 H 0.39 -1.97 8.70 -74.06 -0.64 -2.61 16 34 H -0.29 -1.94 7.11 99.48 0.71 -1.23 16 35 H -0.29 -2.19 7.11 99.48 0.71 -1.48 16 36 H 0.08 -0.06 5.64 -2.39 -0.01 -0.08 16 37 H 0.08 -0.33 7.66 -2.39 -0.02 -0.35 16 38 H 0.12 -0.30 7.03 -2.39 -0.02 -0.31 16 39 H 0.09 0.11 8.10 -2.39 -0.02 0.09 16 40 H 0.07 -0.57 6.60 -2.38 -0.02 -0.58 16 41 H 0.04 -0.08 6.56 -2.39 -0.02 -0.10 16 42 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.11 -0.91 6.64 -2.39 -0.02 -0.93 16 44 H 0.12 -0.86 8.04 -2.39 -0.02 -0.88 16 45 H 0.15 -0.47 6.29 -2.91 -0.02 -0.49 16 46 H 0.15 -0.65 6.29 -2.91 -0.02 -0.67 16 Total: 0.00 -16.41 378.79 3.78 -12.62 By element: Atomic # 1 Polarization: -12.90 SS G_CDS: 0.43 Total: -12.47 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.12 Total: 6.43 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -5.00 Total: -9.20 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 2.17 Total: -0.25 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: 2.05 Total: 2.87 kcal Total: -16.41 3.78 -12.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_508406_17321600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.492 kcal (2) G-P(sol) polarization free energy of solvation -16.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds