Wall clock time and date at job start Mon Mar 8 2021 16:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 C 1.42906 * 116.99850 * 180.02562 * 14 13 6 16 16 C 1.52999 * 109.46867 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47190 * 64.99995 * 16 15 14 18 18 Si 1.63099 * 114.00038 * 179.97438 * 17 16 15 19 19 C 1.86297 * 109.47266 * 300.00536 * 18 17 16 20 20 C 1.86309 * 109.46974 * 60.00242 * 18 17 16 21 21 C 1.86297 * 109.47379 * 180.02562 * 18 17 16 22 22 C 1.52998 * 109.46780 * 60.00003 * 21 18 17 23 23 C 1.53000 * 109.47666 * 180.02562 * 21 18 17 24 24 C 1.52998 * 109.47114 * 300.00558 * 21 18 17 25 25 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 26 26 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 27 27 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 28 28 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 31 31 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 32 32 H 0.96704 * 113.99354 * 180.02562 * 8 7 6 33 33 H 1.08993 * 109.47249 * 300.00194 * 15 14 13 34 34 H 1.08995 * 109.46882 * 60.00797 * 15 14 13 35 35 H 1.08997 * 109.47206 * 185.00505 * 16 15 14 36 36 H 1.09006 * 109.47456 * 305.00207 * 16 15 14 37 37 H 1.09001 * 109.47785 * 59.99774 * 19 18 17 38 38 H 1.09006 * 109.47185 * 180.02562 * 19 18 17 39 39 H 1.09005 * 109.47321 * 299.99491 * 19 18 17 40 40 H 1.08997 * 109.46712 * 60.00005 * 20 18 17 41 41 H 1.09006 * 109.46911 * 179.97438 * 20 18 17 42 42 H 1.08997 * 109.47037 * 300.00007 * 20 18 17 43 43 H 1.09000 * 109.47208 * 60.00356 * 22 21 18 44 44 H 1.09009 * 109.47041 * 179.97438 * 22 21 18 45 45 H 1.08999 * 109.47651 * 299.99897 * 22 21 18 46 46 H 1.09004 * 109.46777 * 59.99757 * 23 21 18 47 47 H 1.08997 * 109.47532 * 180.02562 * 23 21 18 48 48 H 1.08998 * 109.46645 * 300.00744 * 23 21 18 49 49 H 1.08997 * 109.47577 * 59.99540 * 24 21 18 50 50 H 1.08997 * 109.47181 * 179.97438 * 24 21 18 51 51 H 1.09007 * 109.46764 * 299.99347 * 24 21 18 52 52 H 1.07995 * 120.05190 * 179.97438 * 25 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 6 6.1318 1.3601 -0.0005 16 6 7.6352 1.6440 0.0007 17 8 7.9970 2.2903 1.2228 18 14 9.5846 2.6448 1.3411 19 6 10.5812 1.0744 1.2337 20 6 10.0715 3.7855 -0.0491 21 6 9.9148 3.4787 2.9740 22 6 9.5150 2.5414 4.1153 23 6 11.4039 3.8118 3.0848 24 6 9.0962 4.7683 3.0627 25 6 3.4305 1.2840 -0.0001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2123 2.3184 0.0005 30 1 1.3281 4.5115 0.0113 31 1 4.7897 5.0225 0.7288 32 1 4.9570 6.1464 -1.3721 33 1 5.8700 0.7868 0.8888 34 1 5.8704 0.7888 -0.8911 35 1 8.1823 0.7056 -0.0898 36 1 7.8834 2.2917 -0.8401 37 1 10.3882 0.5861 0.2786 38 1 11.6422 1.3113 1.3133 39 1 10.2964 0.4070 2.0471 40 1 9.4884 4.7042 0.0137 41 1 11.1325 4.0227 0.0302 42 1 9.8784 3.2972 -1.0043 43 1 10.0981 1.6227 4.0521 44 1 9.7086 3.0292 5.0707 45 1 8.4540 2.3045 4.0363 46 1 11.6883 4.4797 2.2716 47 1 11.5972 4.2993 4.0403 48 1 11.9873 2.8933 3.0213 49 1 8.0353 4.5314 2.9837 50 1 9.2891 5.2560 4.0182 51 1 9.3811 5.4360 2.2496 52 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_575374_10264010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:09:13 Heat of formation + Delta-G solvation = -180.595712 kcal Electronic energy + Delta-G solvation = -29125.240609 eV Core-core repulsion = 25213.986428 eV Total energy + Delta-G solvation = -3911.254181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52748 -39.99905 -38.50323 -37.54307 -36.83928 -36.80072 -32.26796 -31.58566 -30.17575 -29.35845 -29.08511 -28.42225 -27.85457 -27.37460 -25.92929 -24.73709 -22.65659 -22.07607 -20.41287 -19.76153 -18.33413 -18.06938 -17.85601 -17.39790 -16.77478 -16.69595 -16.31397 -16.16920 -15.76604 -15.69806 -15.60267 -15.05526 -14.94284 -14.85247 -14.69317 -14.34542 -14.00961 -13.72545 -13.60417 -13.47918 -13.45000 -13.38353 -13.24979 -13.21764 -12.93828 -12.91637 -12.71529 -12.43655 -12.39575 -12.33934 -12.07563 -11.89299 -11.76779 -11.68401 -11.62811 -11.55115 -11.43482 -11.28353 -10.36561 -10.11148 -10.06578 -9.51675 -8.91395 0.35545 0.49839 1.25453 1.44006 1.50403 1.56397 1.74235 1.97351 2.05576 2.13975 2.37388 2.43947 2.70914 3.62726 3.77361 3.87702 4.03637 4.06224 4.09707 4.12796 4.13161 4.15775 4.22608 4.22830 4.27706 4.39314 4.46182 4.48554 4.50352 4.59493 4.65900 4.69404 4.71538 4.73705 4.75527 4.77008 4.81536 4.86732 5.00880 5.11254 5.11804 5.15384 5.18596 5.33415 5.36716 5.37872 5.42763 5.44189 5.50697 5.53482 5.60670 5.62937 6.32806 6.52346 6.78756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.173 3.827 4 C -0.242 4.242 5 C -0.045 4.045 6 C -0.146 4.146 7 C -0.064 4.064 8 O -0.542 6.542 9 Si 0.940 3.060 10 H -0.249 1.249 11 H -0.256 1.256 12 H -0.249 1.249 13 C 0.199 3.801 14 O -0.287 6.287 15 C 0.053 3.947 16 C 0.088 3.912 17 O -0.618 6.618 18 Si 1.287 2.713 19 C -0.512 4.512 20 C -0.510 4.510 21 C -0.374 4.374 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.134 4.134 25 C -0.247 4.247 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.375 0.625 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.052 0.948 51 H 0.054 0.946 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -0.754 -0.018 0.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.127 3.873 4 C -0.261 4.261 5 C -0.063 4.063 6 C -0.147 4.147 7 C -0.174 4.174 8 O -0.347 6.347 9 Si 0.763 3.237 10 H -0.172 1.172 11 H -0.180 1.180 12 H -0.173 1.173 13 C 0.152 3.848 14 O -0.199 6.199 15 C -0.022 4.022 16 C 0.012 3.988 17 O -0.578 6.578 18 Si 1.418 2.582 19 C -0.614 4.614 20 C -0.612 4.612 21 C -0.418 4.418 22 C -0.191 4.191 23 C -0.194 4.194 24 C -0.191 4.191 25 C -0.267 4.267 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.222 0.778 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.043 -0.722 0.227 1.289 hybrid contribution 0.774 0.065 -0.097 0.782 sum -0.270 -0.656 0.130 0.722 Atomic orbital electron populations 1.23127 0.77790 1.04287 1.01708 1.86072 1.21872 1.26762 1.88098 1.18693 0.91542 0.84252 0.92811 1.21045 1.00309 0.91731 1.13022 1.20671 0.92783 0.97765 0.95040 1.18448 0.92187 0.92332 1.11689 1.24460 1.03950 1.00024 0.88980 1.86535 1.76958 1.42170 1.29078 0.85907 0.79321 0.77610 0.80864 1.17205 1.18005 1.17316 1.18351 0.82735 0.92043 0.91696 1.86213 1.14318 1.32014 1.87333 1.23064 0.91021 0.85695 1.02432 1.22076 0.93389 0.97442 0.85878 1.85400 1.54671 1.77143 1.40553 0.76729 0.51580 0.64723 0.65184 1.27056 1.10965 1.18994 1.04399 1.27021 1.06179 1.12584 1.15406 1.25770 0.98477 1.02645 1.14860 1.21511 1.01425 0.98482 0.97686 1.21556 0.94278 1.01352 1.02184 1.21508 0.99841 0.96006 1.01749 1.20403 0.92753 0.97557 1.15954 0.92308 0.92320 0.87970 0.84909 0.85136 0.90550 0.77810 0.90594 0.90482 0.90484 0.91301 0.91499 0.90685 0.90872 0.90755 0.90840 0.91477 0.92758 0.92833 0.92145 0.92514 0.92534 0.92570 0.92046 0.92877 0.92698 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.32 -0.75 10.49 -19.42 -0.20 -0.95 16 3 C 0.17 0.51 6.68 -39.24 -0.26 0.24 16 4 C -0.24 -0.48 9.04 -39.41 -0.36 -0.84 16 5 C -0.04 -0.11 8.65 -39.63 -0.34 -0.45 16 6 C -0.15 -0.49 5.31 -104.45 -0.55 -1.04 16 7 C -0.06 -0.11 2.37 36.00 0.09 -0.03 16 8 O -0.54 -1.10 12.86 -35.23 -0.45 -1.55 16 9 Si 0.94 0.55 25.48 -169.99 -4.33 -3.78 16 10 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 11 H -0.26 -0.14 7.11 56.52 0.40 0.26 16 12 H -0.25 -0.31 6.74 56.52 0.38 0.07 16 13 C 0.20 0.70 6.66 -39.24 -0.26 0.44 16 14 O -0.29 -0.88 9.43 -24.27 -0.23 -1.10 16 15 C 0.05 0.01 5.12 37.16 0.19 0.20 16 16 C 0.09 -0.07 5.50 37.16 0.20 0.13 16 17 O -0.62 -0.33 8.52 -40.08 -0.34 -0.67 16 18 Si 1.29 -1.30 8.45 -169.99 -1.44 -2.74 16 19 C -0.51 0.50 8.50 101.05 0.86 1.35 16 20 C -0.51 0.27 8.50 101.05 0.86 1.13 16 21 C -0.37 0.07 0.53 -90.62 -0.05 0.02 16 22 C -0.13 -0.03 7.85 37.16 0.29 0.27 16 23 C -0.14 0.07 7.85 37.16 0.29 0.37 16 24 C -0.13 -0.04 7.84 37.16 0.29 0.25 16 25 C -0.25 -0.72 8.97 -39.29 -0.35 -1.07 16 26 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 27 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 28 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 29 H 0.13 -0.04 6.29 -52.48 -0.33 -0.37 16 30 H 0.13 0.10 4.87 -52.49 -0.26 -0.15 16 31 H 0.08 0.09 7.82 -51.93 -0.41 -0.32 16 32 H 0.38 -0.88 8.74 45.56 0.40 -0.49 16 33 H 0.08 -0.03 7.66 -51.93 -0.40 -0.43 16 34 H 0.08 -0.12 7.66 -51.93 -0.40 -0.52 16 35 H 0.08 -0.25 7.21 -51.93 -0.37 -0.63 16 36 H 0.07 -0.10 7.21 -51.93 -0.37 -0.47 16 37 H 0.07 -0.10 7.48 -51.93 -0.39 -0.49 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 39 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 40 H 0.07 0.00 7.79 -51.93 -0.40 -0.41 16 41 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 42 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 43 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 44 H 0.05 0.02 8.14 -51.92 -0.42 -0.40 16 45 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 46 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 47 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 48 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 49 H 0.06 0.04 7.96 -51.93 -0.41 -0.37 16 50 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 51 H 0.05 -0.02 7.80 -51.93 -0.40 -0.42 16 52 H 0.14 0.17 6.30 -52.49 -0.33 -0.16 16 LS Contribution 410.25 15.07 6.18 6.18 Total: 0.00 -6.47 410.25 -7.54 -14.01 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: -8.61 Total: -11.33 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 1.89 Total: 1.94 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -1.23 Total: -4.27 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: -5.77 Total: -6.52 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -6.47 -7.54 -14.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_575374_10264010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.590 kcal (2) G-P(sol) polarization free energy of solvation -6.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds