Wall clock time and date at job start Mon Mar 8 2021 16:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 C 1.42906 * 116.99850 * 180.02562 * 14 13 6 16 16 C 1.52999 * 109.46867 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47190 * 64.99995 * 16 15 14 18 18 Si 1.63099 * 114.00038 * 179.97438 * 17 16 15 19 19 C 1.86297 * 109.47266 * 300.00536 * 18 17 16 20 20 C 1.86309 * 109.46974 * 60.00242 * 18 17 16 21 21 C 1.86297 * 109.47379 * 180.02562 * 18 17 16 22 22 C 1.52998 * 109.46780 * 60.00003 * 21 18 17 23 23 C 1.53000 * 109.47666 * 180.02562 * 21 18 17 24 24 C 1.52998 * 109.47114 * 300.00558 * 21 18 17 25 25 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 26 26 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 27 27 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 28 28 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 31 31 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 32 32 H 0.96704 * 113.99354 * 180.02562 * 8 7 6 33 33 H 1.08993 * 109.47249 * 300.00194 * 15 14 13 34 34 H 1.08995 * 109.46882 * 60.00797 * 15 14 13 35 35 H 1.08997 * 109.47206 * 185.00505 * 16 15 14 36 36 H 1.09006 * 109.47456 * 305.00207 * 16 15 14 37 37 H 1.09001 * 109.47785 * 59.99774 * 19 18 17 38 38 H 1.09006 * 109.47185 * 180.02562 * 19 18 17 39 39 H 1.09005 * 109.47321 * 299.99491 * 19 18 17 40 40 H 1.08997 * 109.46712 * 60.00005 * 20 18 17 41 41 H 1.09006 * 109.46911 * 179.97438 * 20 18 17 42 42 H 1.08997 * 109.47037 * 300.00007 * 20 18 17 43 43 H 1.09000 * 109.47208 * 60.00356 * 22 21 18 44 44 H 1.09009 * 109.47041 * 179.97438 * 22 21 18 45 45 H 1.08999 * 109.47651 * 299.99897 * 22 21 18 46 46 H 1.09004 * 109.46777 * 59.99757 * 23 21 18 47 47 H 1.08997 * 109.47532 * 180.02562 * 23 21 18 48 48 H 1.08998 * 109.46645 * 300.00744 * 23 21 18 49 49 H 1.08997 * 109.47577 * 59.99540 * 24 21 18 50 50 H 1.08997 * 109.47181 * 179.97438 * 24 21 18 51 51 H 1.09007 * 109.46764 * 299.99347 * 24 21 18 52 52 H 1.07995 * 120.05190 * 179.97438 * 25 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 6 6.1318 1.3601 -0.0005 16 6 7.6352 1.6440 0.0007 17 8 7.9970 2.2903 1.2228 18 14 9.5846 2.6448 1.3411 19 6 10.5812 1.0744 1.2337 20 6 10.0715 3.7855 -0.0491 21 6 9.9148 3.4787 2.9740 22 6 9.5150 2.5414 4.1153 23 6 11.4039 3.8118 3.0848 24 6 9.0962 4.7683 3.0627 25 6 3.4305 1.2840 -0.0001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2123 2.3184 0.0005 30 1 1.3281 4.5115 0.0113 31 1 4.7897 5.0225 0.7288 32 1 4.9570 6.1464 -1.3721 33 1 5.8700 0.7868 0.8888 34 1 5.8704 0.7888 -0.8911 35 1 8.1823 0.7056 -0.0898 36 1 7.8834 2.2917 -0.8401 37 1 10.3882 0.5861 0.2786 38 1 11.6422 1.3113 1.3133 39 1 10.2964 0.4070 2.0471 40 1 9.4884 4.7042 0.0137 41 1 11.1325 4.0227 0.0302 42 1 9.8784 3.2972 -1.0043 43 1 10.0981 1.6227 4.0521 44 1 9.7086 3.0292 5.0707 45 1 8.4540 2.3045 4.0363 46 1 11.6883 4.4797 2.2716 47 1 11.5972 4.2993 4.0403 48 1 11.9873 2.8933 3.0213 49 1 8.0353 4.5314 2.9837 50 1 9.2891 5.2560 4.0182 51 1 9.3811 5.4360 2.2496 52 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_575374_10264010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:09:12 Heat of formation + Delta-G solvation = -174.777653 kcal Electronic energy + Delta-G solvation = -29124.988319 eV Core-core repulsion = 25213.986428 eV Total energy + Delta-G solvation = -3911.001891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.63425 -40.07371 -38.54336 -37.56810 -36.91142 -36.80758 -32.37435 -31.64108 -30.21017 -29.29107 -29.04196 -28.38058 -27.82126 -27.36225 -26.02529 -24.76341 -22.70116 -22.18676 -20.40021 -19.84517 -18.42482 -18.03512 -17.93778 -17.46143 -16.85781 -16.75177 -16.32412 -16.17546 -15.79478 -15.70979 -15.61515 -15.13787 -14.96454 -14.83124 -14.70264 -14.41849 -13.96279 -13.78485 -13.58117 -13.49375 -13.44438 -13.33130 -13.22607 -13.15515 -12.93914 -12.91100 -12.69128 -12.43770 -12.39815 -12.33356 -12.13444 -11.87326 -11.81982 -11.68231 -11.67756 -11.56643 -11.44811 -11.24219 -10.29620 -10.19292 -10.03570 -9.66061 -9.05218 0.19996 0.34683 1.18906 1.46404 1.51754 1.54208 1.80805 1.90210 2.09412 2.15713 2.35246 2.50193 2.56799 3.57924 3.69580 3.91270 4.00038 4.04207 4.10492 4.14003 4.14670 4.19179 4.29890 4.34949 4.37256 4.38214 4.43052 4.47317 4.49033 4.66777 4.70098 4.74938 4.76914 4.80183 4.81212 4.81582 4.84177 4.84455 5.01558 5.03797 5.10574 5.10887 5.21383 5.24356 5.30789 5.35192 5.42349 5.43830 5.48964 5.53896 5.61681 5.66547 6.26019 6.42869 6.88802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.161 3.839 4 C -0.245 4.245 5 C -0.054 4.054 6 C -0.167 4.167 7 C -0.070 4.070 8 O -0.560 6.560 9 Si 0.977 3.023 10 H -0.257 1.257 11 H -0.254 1.254 12 H -0.257 1.257 13 C 0.185 3.815 14 O -0.302 6.302 15 C 0.044 3.956 16 C 0.079 3.921 17 O -0.637 6.637 18 Si 1.315 2.685 19 C -0.516 4.516 20 C -0.517 4.517 21 C -0.383 4.383 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.257 4.257 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.154 0.846 30 H 0.144 0.856 31 H 0.076 0.924 32 H 0.392 0.608 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.047 0.953 51 H 0.059 0.941 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -1.064 -0.443 1.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.115 3.885 4 C -0.263 4.263 5 C -0.071 4.071 6 C -0.168 4.168 7 C -0.179 4.179 8 O -0.368 6.368 9 Si 0.800 3.200 10 H -0.181 1.181 11 H -0.178 1.178 12 H -0.182 1.182 13 C 0.138 3.862 14 O -0.214 6.214 15 C -0.031 4.031 16 C 0.004 3.996 17 O -0.596 6.596 18 Si 1.445 2.555 19 C -0.618 4.618 20 C -0.619 4.619 21 C -0.425 4.425 22 C -0.193 4.193 23 C -0.197 4.197 24 C -0.193 4.193 25 C -0.277 4.277 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.094 0.906 32 H 0.241 0.759 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.062 -1.019 -0.196 1.485 hybrid contribution 0.775 0.132 0.035 0.787 sum -0.287 -0.887 -0.160 0.946 Atomic orbital electron populations 1.23388 0.76116 1.05686 1.02551 1.86049 1.23703 1.26622 1.88070 1.18871 0.91779 0.84816 0.93027 1.21311 1.01427 0.91309 1.12278 1.20904 0.92726 0.98531 0.94986 1.18810 0.92857 0.93111 1.12005 1.24612 1.04445 1.00057 0.88829 1.86482 1.77351 1.43673 1.29315 0.85372 0.78155 0.76732 0.79744 1.18142 1.17786 1.18182 1.18543 0.83117 0.92429 0.92157 1.86191 1.14242 1.33606 1.87381 1.23314 0.91451 0.85091 1.03196 1.22312 0.92979 0.98760 0.85560 1.85390 1.55523 1.77525 1.41209 0.76223 0.50991 0.64337 0.63971 1.27069 1.11103 1.18813 1.04822 1.27105 1.06376 1.12477 1.15916 1.25918 0.98646 1.02358 1.15574 1.21533 1.01196 0.98950 0.97649 1.21597 0.94096 1.01903 1.02118 1.21527 0.99549 0.96540 1.01709 1.20587 0.93201 0.97830 1.16043 0.91397 0.91503 0.86393 0.82827 0.83897 0.90639 0.75896 0.90496 0.89040 0.87829 0.90876 0.90691 0.90370 0.91016 0.91448 0.90431 0.91112 0.91947 0.93411 0.92756 0.91859 0.93184 0.91718 0.92797 0.93360 0.92150 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.65 10.49 -92.40 -0.97 -2.62 16 3 C 0.16 1.04 6.68 22.49 0.15 1.19 16 4 C -0.24 -1.04 9.04 22.38 0.20 -0.83 16 5 C -0.05 -0.29 8.65 22.24 0.19 -0.10 16 6 C -0.17 -1.29 5.31 -19.75 -0.10 -1.40 16 7 C -0.07 -0.31 2.37 71.23 0.17 -0.14 16 8 O -0.56 -2.67 12.86 -148.98 -1.92 -4.59 16 9 Si 0.98 1.26 25.48 68.60 1.75 3.01 16 10 H -0.26 -0.64 7.11 99.48 0.71 0.07 16 11 H -0.25 -0.17 7.11 99.48 0.71 0.53 16 12 H -0.26 -0.63 6.74 99.48 0.67 0.05 16 13 C 0.18 1.54 6.66 22.49 0.15 1.69 16 14 O -0.30 -2.21 9.43 -87.75 -0.83 -3.03 16 15 C 0.04 0.04 5.12 71.98 0.37 0.40 16 16 C 0.08 -0.13 5.50 71.98 0.40 0.26 16 17 O -0.64 -0.90 8.52 -144.34 -1.23 -2.13 16 18 Si 1.31 -2.71 8.45 68.60 0.58 -2.13 16 19 C -0.52 1.43 8.50 113.37 0.96 2.39 16 20 C -0.52 0.59 8.50 113.37 0.96 1.56 16 21 C -0.38 -0.05 0.53 -10.79 -0.01 -0.05 16 22 C -0.14 -0.15 7.85 71.98 0.56 0.42 16 23 C -0.14 0.14 7.85 71.98 0.56 0.70 16 24 C -0.14 -0.22 7.84 71.98 0.56 0.35 16 25 C -0.26 -1.77 8.97 22.46 0.20 -1.56 16 26 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 27 H 0.07 -0.30 7.66 -2.39 -0.02 -0.32 16 28 H 0.12 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H 0.15 -0.18 6.29 -2.91 -0.02 -0.19 16 30 H 0.14 0.26 4.87 -2.91 -0.01 0.24 16 31 H 0.08 0.27 7.82 -2.39 -0.02 0.26 16 32 H 0.39 -1.66 8.74 -74.05 -0.65 -2.30 16 33 H 0.08 0.01 7.66 -2.39 -0.02 -0.01 16 34 H 0.09 -0.25 7.66 -2.39 -0.02 -0.27 16 35 H 0.10 -0.77 7.21 -2.39 -0.02 -0.79 16 36 H 0.07 -0.21 7.21 -2.38 -0.02 -0.23 16 37 H 0.07 -0.32 7.48 -2.39 -0.02 -0.34 16 38 H 0.08 -0.25 7.79 -2.38 -0.02 -0.27 16 39 H 0.07 -0.16 7.79 -2.38 -0.02 -0.17 16 40 H 0.07 0.02 7.79 -2.39 -0.02 0.00 16 41 H 0.08 -0.16 7.79 -2.38 -0.02 -0.18 16 42 H 0.07 -0.13 7.48 -2.39 -0.02 -0.15 16 43 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 44 H 0.05 0.09 8.14 -2.38 -0.02 0.07 16 45 H 0.05 0.12 7.97 -2.39 -0.02 0.10 16 46 H 0.06 -0.15 7.79 -2.38 -0.02 -0.17 16 47 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 49 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 50 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 51 H 0.06 0.01 7.80 -2.38 -0.02 -0.01 16 52 H 0.15 0.53 6.30 -2.91 -0.02 0.51 16 Total: 0.00 -15.07 410.25 4.80 -10.27 By element: Atomic # 1 Polarization: -5.69 SS G_CDS: 0.96 Total: -4.73 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.45 Total: 5.95 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -4.94 Total: -12.37 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: 2.33 Total: 0.88 kcal Total: -15.07 4.80 -10.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_575374_10264010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.504 kcal (2) G-P(sol) polarization free energy of solvation -15.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds