Wall clock time and date at job start Mon Mar 8 2021 14:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 C 1.42906 * 116.99850 * 180.02562 * 14 13 6 16 16 C 1.50701 * 109.46791 * 179.97438 * 15 14 13 17 17 C 1.38232 * 120.00526 * 269.72776 * 16 15 14 18 18 C 1.38232 * 120.00475 * 179.77006 * 17 16 15 19 19 C 1.38233 * 119.99648 * 0.50449 * 18 17 16 20 20 Si 1.86798 * 120.00257 * 179.72690 * 19 18 17 21 21 C 1.86304 * 109.47197 * 270.02452 * 20 19 18 22 22 C 1.86306 * 109.47029 * 30.02199 * 20 19 18 23 23 C 1.86294 * 109.47525 * 150.02295 * 20 19 18 24 24 C 1.38244 * 120.00076 * 359.74982 * 19 18 17 25 25 C 1.38234 * 119.99983 * 359.97438 * 24 19 18 26 26 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 27 27 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 29 29 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 30 30 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 32 32 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 33 33 H 0.96693 * 114.00047 * 60.00191 * 8 7 6 34 34 H 1.08993 * 109.47249 * 300.00194 * 15 14 13 35 35 H 1.08995 * 109.46882 * 60.00797 * 15 14 13 36 36 H 1.08003 * 119.99874 * 0.02562 * 17 16 15 37 37 H 1.07997 * 120.00330 * 180.23069 * 18 17 16 38 38 H 1.09002 * 109.46754 * 59.99462 * 21 20 19 39 39 H 1.09003 * 109.47096 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47125 * 299.99690 * 21 20 19 41 41 H 1.08995 * 109.47001 * 59.99744 * 22 20 19 42 42 H 1.08992 * 109.47067 * 180.02562 * 22 20 19 43 43 H 1.09006 * 109.47041 * 300.00161 * 22 20 19 44 44 H 1.08996 * 109.47044 * 60.00159 * 23 20 19 45 45 H 1.09003 * 109.47165 * 180.02562 * 23 20 19 46 46 H 1.09006 * 109.47180 * 300.00227 * 23 20 19 47 47 H 1.08005 * 119.99856 * 179.97438 * 24 19 18 48 48 H 1.07996 * 119.99685 * 179.97438 * 25 24 19 49 49 H 1.07995 * 120.05190 * 179.97438 * 26 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 6 6.1318 1.3601 -0.0005 16 6 7.6127 1.6397 -0.0006 17 6 8.2927 1.7634 -1.1977 18 6 9.6501 2.0246 -1.1978 19 6 10.3295 2.1519 -0.0006 20 14 12.1653 2.4973 -0.0006 21 6 13.1004 0.8860 -0.0022 22 6 12.6129 3.4766 -1.5210 23 6 12.6135 3.4739 1.5213 24 6 9.6504 2.0230 1.1966 25 6 8.2919 1.7674 1.1966 26 6 3.4305 1.2840 -0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2123 2.3184 0.0005 31 1 1.3281 4.5115 0.0113 32 1 4.7897 5.0225 0.7288 33 1 3.8355 5.3143 -1.9976 34 1 5.8700 0.7868 0.8888 35 1 5.8704 0.7888 -0.8911 36 1 7.7627 1.6600 -2.1330 37 1 10.1807 2.1249 -2.1331 38 1 12.8381 0.3146 -0.8927 39 1 14.1716 1.0876 -0.0026 40 1 12.8386 0.3130 0.8873 41 1 12.0658 4.4193 -1.5201 42 1 13.6841 3.6778 -1.5212 43 1 12.3507 2.9052 -2.4115 44 1 12.3516 2.9009 2.4108 45 1 13.6846 3.6758 1.5210 46 1 12.0663 4.4167 1.5222 47 1 10.1814 2.1220 2.1319 48 1 7.7616 1.6663 2.1320 49 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_575374_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:21:00 Heat of formation + Delta-G solvation = -100.158500 kcal Electronic energy + Delta-G solvation = -27530.545507 eV Core-core repulsion = 23739.632213 eV Total energy + Delta-G solvation = -3790.913294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66479 -40.35842 -39.59893 -38.20621 -36.84377 -33.07279 -32.21886 -31.83055 -30.84646 -29.54784 -28.50739 -28.41414 -28.39126 -27.31213 -26.04932 -23.59783 -23.42939 -22.42377 -21.80416 -19.85465 -18.38077 -17.85518 -17.29423 -17.25661 -17.12002 -16.65030 -16.55953 -16.07172 -15.89116 -15.44873 -15.30652 -15.14898 -14.79789 -14.33479 -14.31396 -14.15010 -14.09218 -13.86492 -13.83010 -13.58773 -13.47271 -13.39100 -13.25997 -13.23138 -13.15150 -13.07598 -12.52769 -12.48269 -12.28513 -12.12236 -11.91800 -11.88537 -11.54431 -11.53453 -11.01443 -10.87753 -10.79217 -10.24198 -9.72343 -9.63606 -9.61489 -9.01313 0.22327 0.25986 0.39910 0.60511 1.23190 1.44627 1.56988 1.73603 1.87703 1.91261 1.96676 2.14871 2.37706 2.57371 2.64455 3.09227 3.63727 3.66351 3.81007 3.84646 3.89291 4.04626 4.05988 4.13846 4.16624 4.23885 4.27514 4.37546 4.44423 4.47988 4.54747 4.59850 4.71033 4.72697 4.74412 4.76795 4.77588 4.78513 4.78973 4.80974 5.05722 5.07712 5.20698 5.29485 5.31760 5.44059 5.49442 5.53531 5.53640 5.55869 5.66807 5.68039 6.16487 6.24906 6.44500 6.73017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.174 3.826 4 C -0.241 4.241 5 C -0.049 4.049 6 C -0.190 4.190 7 C -0.062 4.062 8 O -0.534 6.534 9 Si 0.946 3.054 10 H -0.250 1.250 11 H -0.253 1.253 12 H -0.253 1.253 13 C 0.198 3.802 14 O -0.289 6.289 15 C 0.097 3.903 16 C -0.087 4.087 17 C -0.103 4.103 18 C -0.091 4.091 19 C -0.361 4.361 20 Si 1.059 2.941 21 C -0.449 4.449 22 C -0.450 4.450 23 C -0.450 4.450 24 C -0.092 4.092 25 C -0.106 4.106 26 C -0.247 4.247 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.115 0.885 33 H 0.371 0.629 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -1.172 0.145 1.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.128 3.872 4 C -0.260 4.260 5 C -0.067 4.067 6 C -0.191 4.191 7 C -0.173 4.173 8 O -0.338 6.338 9 Si 0.769 3.231 10 H -0.173 1.173 11 H -0.177 1.177 12 H -0.177 1.177 13 C 0.151 3.849 14 O -0.202 6.202 15 C 0.022 3.978 16 C -0.087 4.087 17 C -0.121 4.121 18 C -0.109 4.109 19 C -0.403 4.403 20 Si 1.251 2.749 21 C -0.556 4.556 22 C -0.557 4.557 23 C -0.557 4.557 24 C -0.110 4.110 25 C -0.124 4.124 26 C -0.266 4.266 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.217 0.783 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.078 -0.561 0.710 1.407 hybrid contribution -0.865 -0.678 -0.384 1.164 sum -1.942 -1.239 0.326 2.327 Atomic orbital electron populations 1.23137 0.77704 1.04376 1.01705 1.86082 1.21936 1.26730 1.88016 1.18705 0.91519 0.84311 0.92659 1.21078 1.00343 0.91798 1.12805 1.20722 0.92847 0.97770 0.95326 1.19523 0.92679 0.94602 1.12342 1.24730 1.05755 0.97528 0.89317 1.86569 1.37531 1.93616 1.16103 0.85799 0.77546 0.78628 0.81078 1.17319 1.17671 1.17708 1.18367 0.82611 0.92083 0.91851 1.86276 1.14396 1.32115 1.87379 1.21698 0.88458 0.85187 1.02408 1.19420 0.92870 1.02336 0.94061 1.21139 0.94950 0.98817 0.97225 1.21068 0.93923 0.97732 0.98204 1.27464 1.16762 1.01856 0.94185 0.78188 0.62124 0.67234 0.67360 1.26122 1.08345 1.16550 1.04606 1.26134 1.05478 1.09115 1.15019 1.26134 1.05495 1.09069 1.15038 1.21065 0.93898 0.97858 0.98195 1.21135 0.94985 0.99151 0.97174 1.20443 0.92803 0.97641 1.15731 0.87899 0.92288 0.92300 0.84905 0.85051 0.86728 0.78279 0.90907 0.90876 0.86131 0.85925 0.91173 0.91036 0.91180 0.90987 0.90974 0.91174 0.91185 0.90965 0.91006 0.85943 0.86173 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.31 -0.63 10.49 -19.42 -0.20 -0.84 16 3 C 0.17 0.41 6.68 -39.24 -0.26 0.14 16 4 C -0.24 -0.27 9.04 -39.41 -0.36 -0.62 16 5 C -0.05 -0.05 8.65 -39.63 -0.34 -0.40 16 6 C -0.19 -0.41 5.28 -104.45 -0.55 -0.97 16 7 C -0.06 -0.10 2.38 36.00 0.09 -0.01 16 8 O -0.53 -1.25 12.88 -35.23 -0.45 -1.71 16 9 Si 0.95 0.34 25.48 -169.99 -4.33 -3.99 16 10 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 11 H -0.25 -0.45 7.11 56.52 0.40 -0.05 16 12 H -0.25 0.05 6.74 56.52 0.38 0.43 16 13 C 0.20 0.59 6.66 -39.24 -0.26 0.32 16 14 O -0.29 -0.98 9.45 -19.41 -0.18 -1.16 16 15 C 0.10 0.13 4.87 36.01 0.18 0.30 16 16 C -0.09 -0.18 5.51 -104.62 -0.58 -0.76 16 17 C -0.10 -0.19 9.70 -39.59 -0.38 -0.58 16 18 C -0.09 -0.10 9.29 -39.59 -0.37 -0.46 16 19 C -0.36 -0.15 4.59 -39.58 -0.18 -0.33 16 20 Si 1.06 -2.18 12.32 -169.99 -2.09 -4.28 16 21 C -0.45 0.56 8.65 101.05 0.87 1.43 16 22 C -0.45 0.58 8.53 101.05 0.86 1.44 16 23 C -0.45 0.61 8.53 101.05 0.86 1.47 16 24 C -0.09 -0.08 9.29 -39.58 -0.37 -0.45 16 25 C -0.11 -0.18 9.70 -39.58 -0.38 -0.56 16 26 C -0.25 -0.61 8.97 -39.29 -0.35 -0.96 16 27 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 28 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 29 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 30 H 0.13 -0.14 6.29 -52.48 -0.33 -0.47 16 31 H 0.13 -0.09 4.87 -52.49 -0.26 -0.34 16 32 H 0.11 0.23 7.82 -51.93 -0.41 -0.18 16 33 H 0.37 -0.44 8.70 45.56 0.40 -0.04 16 34 H 0.07 0.01 7.60 -51.93 -0.39 -0.39 16 35 H 0.07 0.02 7.60 -51.93 -0.39 -0.37 16 36 H 0.12 0.09 8.06 -52.48 -0.42 -0.33 16 37 H 0.12 -0.11 7.43 -52.49 -0.39 -0.50 16 38 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 39 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 40 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 41 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 43 H 0.07 -0.10 7.69 -51.93 -0.40 -0.50 16 44 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 45 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 46 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 47 H 0.12 -0.13 7.43 -52.48 -0.39 -0.52 16 48 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 49 H 0.14 0.18 6.30 -52.49 -0.33 -0.15 16 LS Contribution 402.45 15.07 6.06 6.06 Total: 0.00 -6.58 402.45 -8.81 -15.39 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -7.07 Total: -9.44 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.54 Total: -0.04 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.84 Total: -3.70 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: -6.43 Total: -8.26 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -6.58 -8.81 -15.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_575374_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.773 kcal (2) G-P(sol) polarization free energy of solvation -6.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds