Wall clock time and date at job start Mon Mar 8 2021 14:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 C 1.42906 * 116.99850 * 180.02562 * 14 13 6 16 16 C 1.50701 * 109.46791 * 179.97438 * 15 14 13 17 17 C 1.38232 * 120.00526 * 269.72776 * 16 15 14 18 18 C 1.38232 * 120.00475 * 179.77006 * 17 16 15 19 19 C 1.38233 * 119.99648 * 0.50449 * 18 17 16 20 20 Si 1.86798 * 120.00257 * 179.72690 * 19 18 17 21 21 C 1.86304 * 109.47197 * 270.02452 * 20 19 18 22 22 C 1.86306 * 109.47029 * 30.02199 * 20 19 18 23 23 C 1.86294 * 109.47525 * 150.02295 * 20 19 18 24 24 C 1.38244 * 120.00076 * 359.74982 * 19 18 17 25 25 C 1.38234 * 119.99983 * 359.97438 * 24 19 18 26 26 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 27 27 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 29 29 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 30 30 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 32 32 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 33 33 H 0.96693 * 114.00047 * 60.00191 * 8 7 6 34 34 H 1.08993 * 109.47249 * 300.00194 * 15 14 13 35 35 H 1.08995 * 109.46882 * 60.00797 * 15 14 13 36 36 H 1.08003 * 119.99874 * 0.02562 * 17 16 15 37 37 H 1.07997 * 120.00330 * 180.23069 * 18 17 16 38 38 H 1.09002 * 109.46754 * 59.99462 * 21 20 19 39 39 H 1.09003 * 109.47096 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47125 * 299.99690 * 21 20 19 41 41 H 1.08995 * 109.47001 * 59.99744 * 22 20 19 42 42 H 1.08992 * 109.47067 * 180.02562 * 22 20 19 43 43 H 1.09006 * 109.47041 * 300.00161 * 22 20 19 44 44 H 1.08996 * 109.47044 * 60.00159 * 23 20 19 45 45 H 1.09003 * 109.47165 * 180.02562 * 23 20 19 46 46 H 1.09006 * 109.47180 * 300.00227 * 23 20 19 47 47 H 1.08005 * 119.99856 * 179.97438 * 24 19 18 48 48 H 1.07996 * 119.99685 * 179.97438 * 25 24 19 49 49 H 1.07995 * 120.05190 * 179.97438 * 26 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 6 6.1318 1.3601 -0.0005 16 6 7.6127 1.6397 -0.0006 17 6 8.2927 1.7634 -1.1977 18 6 9.6501 2.0246 -1.1978 19 6 10.3295 2.1519 -0.0006 20 14 12.1653 2.4973 -0.0006 21 6 13.1004 0.8860 -0.0022 22 6 12.6129 3.4766 -1.5210 23 6 12.6135 3.4739 1.5213 24 6 9.6504 2.0230 1.1966 25 6 8.2919 1.7674 1.1966 26 6 3.4305 1.2840 -0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2123 2.3184 0.0005 31 1 1.3281 4.5115 0.0113 32 1 4.7897 5.0225 0.7288 33 1 3.8355 5.3143 -1.9976 34 1 5.8700 0.7868 0.8888 35 1 5.8704 0.7888 -0.8911 36 1 7.7627 1.6600 -2.1330 37 1 10.1807 2.1249 -2.1331 38 1 12.8381 0.3146 -0.8927 39 1 14.1716 1.0876 -0.0026 40 1 12.8386 0.3130 0.8873 41 1 12.0658 4.4193 -1.5201 42 1 13.6841 3.6778 -1.5212 43 1 12.3507 2.9052 -2.4115 44 1 12.3516 2.9009 2.4108 45 1 13.6846 3.6758 1.5210 46 1 12.0663 4.4167 1.5222 47 1 10.1814 2.1220 2.1319 48 1 7.7616 1.6663 2.1320 49 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_575374_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:20:59 Heat of formation + Delta-G solvation = -92.028250 kcal Electronic energy + Delta-G solvation = -27530.192953 eV Core-core repulsion = 23739.632213 eV Total energy + Delta-G solvation = -3790.560740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76341 -40.42801 -39.66381 -38.31975 -36.95073 -33.13982 -32.30648 -31.88688 -30.93739 -29.43445 -28.43740 -28.29302 -28.26703 -27.38856 -26.13107 -23.68489 -23.49071 -22.51335 -21.88041 -19.93820 -18.47539 -17.94747 -17.35060 -17.32862 -17.22359 -16.65753 -16.63129 -16.11117 -15.98264 -15.50014 -15.39877 -15.22869 -14.85554 -14.35040 -14.33647 -14.05845 -14.04507 -13.86320 -13.73881 -13.61214 -13.48818 -13.36792 -13.18871 -13.12144 -13.11119 -12.96520 -12.55859 -12.49921 -12.27911 -12.19754 -11.97334 -11.92978 -11.60460 -11.59022 -10.92249 -10.77915 -10.75638 -10.33875 -9.81039 -9.73163 -9.68980 -9.12035 0.15134 0.15690 0.28237 0.51882 1.17591 1.42682 1.53337 1.83506 1.91319 1.96705 2.02703 2.17182 2.35411 2.53601 2.66948 3.01982 3.58215 3.60482 3.74556 3.78473 3.83331 4.00931 4.03487 4.14539 4.21945 4.23748 4.32803 4.36213 4.40546 4.44464 4.52852 4.66467 4.70586 4.72474 4.85034 4.85212 4.89019 4.89600 4.90089 4.91164 4.99387 4.99801 5.15461 5.20138 5.22976 5.39574 5.46045 5.56250 5.59399 5.59630 5.68212 5.70814 6.11803 6.18903 6.35414 6.77018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.162 3.838 4 C -0.240 4.240 5 C -0.050 4.050 6 C -0.200 4.200 7 C -0.071 4.071 8 O -0.553 6.553 9 Si 0.988 3.012 10 H -0.255 1.255 11 H -0.276 1.276 12 H -0.236 1.236 13 C 0.182 3.818 14 O -0.306 6.306 15 C 0.098 3.902 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.374 4.374 20 Si 1.126 2.874 21 C -0.460 4.460 22 C -0.463 4.463 23 C -0.462 4.462 24 C -0.103 4.103 25 C -0.122 4.122 26 C -0.258 4.258 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.385 0.615 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.139 0.861 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.141 0.859 48 H 0.127 0.873 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 -0.982 0.153 2.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.116 3.884 4 C -0.259 4.259 5 C -0.067 4.067 6 C -0.201 4.201 7 C -0.180 4.180 8 O -0.360 6.360 9 Si 0.810 3.190 10 H -0.179 1.179 11 H -0.201 1.201 12 H -0.159 1.159 13 C 0.135 3.865 14 O -0.219 6.219 15 C 0.024 3.976 16 C -0.103 4.103 17 C -0.139 4.139 18 C -0.121 4.121 19 C -0.413 4.413 20 Si 1.313 2.687 21 C -0.567 4.567 22 C -0.570 4.570 23 C -0.569 4.569 24 C -0.121 4.121 25 C -0.140 4.140 26 C -0.277 4.277 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.119 0.881 33 H 0.233 0.767 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.159 0.841 48 H 0.145 0.855 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.678 -0.396 0.701 1.862 hybrid contribution -0.681 -0.772 -0.393 1.102 sum -2.359 -1.168 0.308 2.651 Atomic orbital electron populations 1.23402 0.75966 1.05713 1.02675 1.86058 1.23838 1.26754 1.88007 1.18874 0.91605 0.84987 0.92903 1.21363 1.01512 0.91270 1.11749 1.20959 0.92454 0.98639 0.94680 1.19721 0.93315 0.94554 1.12537 1.24920 1.05987 0.98259 0.88813 1.86522 1.38908 1.93663 1.16911 0.85211 0.76770 0.76089 0.80905 1.17864 1.20107 1.15925 1.18572 0.82538 0.92688 0.92673 1.86244 1.14881 1.33142 1.87654 1.21753 0.88116 0.84786 1.02987 1.19593 0.93264 1.02953 0.94450 1.21351 0.95694 0.99427 0.97429 1.21381 0.93808 0.97576 0.99334 1.28102 1.18532 1.00884 0.93756 0.77195 0.59441 0.65907 0.66145 1.26255 1.08886 1.17101 1.04458 1.26285 1.05772 1.09144 1.15792 1.26271 1.05787 1.09103 1.15743 1.21397 0.93813 0.97565 0.99308 1.21370 0.95692 0.99506 0.97416 1.20559 0.93374 0.97673 1.16100 0.86526 0.91285 0.91279 0.82610 0.83104 0.88072 0.76687 0.90149 0.90415 0.85795 0.84299 0.91376 0.90556 0.91320 0.91481 0.90533 0.90936 0.90844 0.90535 0.91444 0.84136 0.85465 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.33 -1.40 10.49 -92.40 -0.97 -2.37 16 3 C 0.16 0.82 6.68 22.49 0.15 0.97 16 4 C -0.24 -0.39 9.04 22.38 0.20 -0.18 16 5 C -0.05 -0.09 8.65 22.24 0.19 0.11 16 6 C -0.20 -1.03 5.28 -19.75 -0.10 -1.13 16 7 C -0.07 -0.30 2.38 71.23 0.17 -0.13 16 8 O -0.55 -3.21 12.88 -148.98 -1.92 -5.13 16 9 Si 0.99 0.43 25.48 68.60 1.75 2.18 16 10 H -0.25 -0.30 7.11 99.48 0.71 0.41 16 11 H -0.28 -1.13 7.11 99.48 0.71 -0.42 16 12 H -0.24 0.56 6.74 99.48 0.67 1.23 16 13 C 0.18 1.37 6.66 22.49 0.15 1.52 16 14 O -0.31 -2.73 9.45 -92.39 -0.87 -3.61 16 15 C 0.10 0.46 4.87 71.24 0.35 0.81 16 16 C -0.10 -0.62 5.51 -19.86 -0.11 -0.73 16 17 C -0.12 -0.66 9.70 22.27 0.22 -0.44 16 18 C -0.10 -0.31 9.29 22.27 0.21 -0.10 16 19 C -0.37 -0.49 4.59 22.27 0.10 -0.39 16 20 Si 1.13 -4.98 12.32 68.60 0.85 -4.14 16 21 C -0.46 1.34 8.65 113.37 0.98 2.32 16 22 C -0.46 1.31 8.53 113.37 0.97 2.28 16 23 C -0.46 1.45 8.53 113.37 0.97 2.42 16 24 C -0.10 -0.26 9.29 22.27 0.21 -0.05 16 25 C -0.12 -0.58 9.70 22.27 0.22 -0.37 16 26 C -0.26 -1.63 8.97 22.46 0.20 -1.43 16 27 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 28 H 0.07 -0.41 7.66 -2.39 -0.02 -0.43 16 29 H 0.07 -0.41 7.66 -2.39 -0.02 -0.43 16 30 H 0.16 -0.59 6.29 -2.91 -0.02 -0.61 16 31 H 0.15 -0.43 4.87 -2.91 -0.01 -0.45 16 32 H 0.10 0.62 7.82 -2.39 -0.02 0.60 16 33 H 0.38 -0.68 8.70 -74.06 -0.64 -1.32 16 34 H 0.08 0.18 7.60 -2.39 -0.02 0.16 16 35 H 0.08 0.22 7.60 -2.39 -0.02 0.21 16 36 H 0.12 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.14 -0.18 7.43 -2.91 -0.02 -0.21 16 38 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 39 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 40 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 41 H 0.07 -0.11 7.96 -2.39 -0.02 -0.12 16 42 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 43 H 0.07 -0.23 7.69 -2.38 -0.02 -0.25 16 44 H 0.07 -0.27 7.69 -2.39 -0.02 -0.29 16 45 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 46 H 0.07 -0.13 7.96 -2.38 -0.02 -0.15 16 47 H 0.14 -0.29 7.43 -2.91 -0.02 -0.31 16 48 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 49 H 0.14 0.64 6.30 -2.91 -0.02 0.62 16 Total: 0.00 -15.79 402.45 6.02 -9.76 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: 1.02 Total: -3.21 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.17 Total: 6.51 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -3.76 Total: -11.11 kcal Atomic # 14 Polarization: -4.55 SS G_CDS: 2.59 Total: -1.95 kcal Total: -15.79 6.02 -9.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_575374_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.264 kcal (2) G-P(sol) polarization free energy of solvation -15.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds