Wall clock time and date at job start Mon Mar 8 2021 16:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 C 1.52998 * 109.47274 * 239.99811 * 2 1 3 5 5 Si 1.86309 * 109.47184 * 119.99753 * 2 1 3 6 6 C 1.86297 * 109.47041 * 300.00328 * 5 2 1 7 7 C 1.86296 * 109.47051 * 179.97438 * 5 2 1 8 8 O 1.63099 * 109.46983 * 59.99975 * 5 2 1 9 9 C 1.42892 * 114.00277 * 179.97438 * 8 5 2 10 10 C 1.52994 * 109.47478 * 180.02562 * 9 8 5 11 11 O 1.42898 * 109.47162 * 65.00627 * 10 9 8 12 12 C 1.35953 * 117.00080 * 179.97438 * 11 10 9 13 13 C 1.38621 * 120.06439 * 359.97438 * 12 11 10 14 14 C 1.38221 * 119.96962 * 180.02562 * 13 12 11 15 15 C 1.38223 * 120.09462 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93324 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 20 20 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 22 22 C 1.38297 * 120.12913 * 0.22850 * 15 14 13 23 23 C 1.38296 * 120.02466 * 359.49524 * 22 15 14 24 24 F 1.35095 * 120.04347 * 180.25545 * 23 22 15 25 25 H 1.09004 * 109.47147 * 299.99519 * 1 2 3 26 26 H 1.08997 * 109.46999 * 60.00220 * 1 2 3 27 27 H 1.09008 * 109.47116 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47043 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47087 * 299.99726 * 3 2 1 30 30 H 1.09000 * 109.47514 * 60.00345 * 3 2 1 31 31 H 1.08998 * 109.46868 * 299.99961 * 4 2 1 32 32 H 1.08997 * 109.47133 * 60.00051 * 4 2 1 33 33 H 1.08997 * 109.47502 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.46979 * 180.02562 * 6 5 2 35 35 H 1.09008 * 109.46858 * 299.99803 * 6 5 2 36 36 H 1.08997 * 109.47628 * 59.99659 * 6 5 2 37 37 H 1.08995 * 109.47505 * 300.00174 * 7 5 2 38 38 H 1.08998 * 109.47177 * 59.99910 * 7 5 2 39 39 H 1.08997 * 109.46867 * 180.02562 * 7 5 2 40 40 H 1.09009 * 109.46906 * 60.00302 * 9 8 5 41 41 H 1.09002 * 109.47340 * 300.00435 * 9 8 5 42 42 H 1.08997 * 109.47674 * 304.99798 * 10 9 8 43 43 H 1.09004 * 109.47270 * 185.00015 * 10 9 8 44 44 H 1.07999 * 120.01115 * 359.97438 * 13 12 11 45 45 H 1.07997 * 119.95705 * 179.97438 * 14 13 12 46 46 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 47 47 H 0.96698 * 114.00355 * 299.99977 * 17 16 15 48 48 H 1.07992 * 119.98853 * 179.74882 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6074 -2.4159 1.5213 9 6 2.0294 -3.1816 2.6515 10 6 1.4646 -4.5996 2.5466 11 8 2.0331 -5.2561 1.4118 12 6 1.6343 -6.5339 1.1740 13 6 0.7160 -7.1427 2.0152 14 6 0.3123 -8.4421 1.7719 15 6 0.8234 -9.1358 0.6911 16 6 0.3812 -10.5525 0.4296 17 8 0.7127 -11.3702 1.5536 18 14 1.2446 -11.2024 -1.0880 19 1 2.7135 -11.1742 -0.8720 20 1 0.8093 -12.5987 -1.3455 21 1 0.8996 -10.3525 -2.2560 22 6 1.7437 -8.5340 -0.1477 23 6 2.1469 -7.2322 0.0876 24 9 3.0420 -6.6423 -0.7345 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 1.8937 -0.5135 3.9323 35 1 1.8933 1.0278 3.0422 36 1 0.4400 0.0001 3.0423 37 1 4.3770 -1.3929 0.6309 38 1 4.3777 0.1487 1.5205 39 1 4.3773 -1.3930 2.4106 40 1 1.6653 -2.7117 3.5652 41 1 3.1183 -3.2255 2.6746 42 1 0.3815 -4.5519 2.4340 43 1 1.7117 -5.1569 3.4502 44 1 0.3168 -6.6023 2.8608 45 1 -0.4028 -8.9164 2.4276 46 1 -0.6970 -10.5732 0.2706 47 1 1.6583 -11.3988 1.7539 48 1 2.1446 -9.0795 -0.9891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_7834706_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:13:35 Heat of formation + Delta-G solvation = -191.988846 kcal Electronic energy + Delta-G solvation = -26708.481552 eV Core-core repulsion = 22801.499162 eV Total energy + Delta-G solvation = -3906.982389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.68239 -41.21354 -39.45842 -37.94399 -37.07172 -36.83854 -32.24579 -31.89050 -30.49962 -29.40958 -29.11281 -27.86946 -27.39364 -26.54325 -24.94885 -23.24267 -22.39983 -20.42990 -19.61750 -18.63299 -18.18496 -17.99313 -17.11551 -16.97754 -16.42406 -16.18021 -16.14833 -16.04208 -15.92336 -15.61165 -15.49169 -14.87138 -14.73763 -14.72549 -14.43243 -14.01162 -13.88107 -13.61097 -13.55235 -13.44713 -13.29902 -13.24863 -12.96216 -12.92896 -12.85622 -12.45570 -12.39730 -12.27358 -12.15649 -12.07945 -11.84852 -11.77188 -11.71047 -11.57210 -11.36121 -10.48747 -10.41503 -10.08790 -10.02936 -9.17801 0.02981 0.11603 1.11115 1.38905 1.41017 1.48346 1.70274 1.89000 1.96305 2.02658 2.38679 2.42968 3.15651 3.39424 3.48212 3.62562 3.85586 3.90088 4.01150 4.04412 4.10762 4.11356 4.12673 4.16126 4.33721 4.46199 4.48183 4.58962 4.62061 4.66063 4.70021 4.72770 4.76231 4.80188 4.85937 4.95634 4.99638 5.05351 5.10178 5.11117 5.15607 5.29269 5.30898 5.33604 5.41098 5.48669 5.50616 5.55471 5.58764 6.25157 6.48917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.286 2.714 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.086 3.914 10 C 0.055 3.945 11 O -0.295 6.295 12 C 0.108 3.892 13 C -0.184 4.184 14 C -0.057 4.057 15 C -0.133 4.133 16 C -0.073 4.073 17 O -0.538 6.538 18 Si 0.942 3.058 19 H -0.250 1.250 20 H -0.251 1.251 21 H -0.248 1.248 22 C -0.122 4.122 23 C 0.075 3.925 24 F -0.129 7.129 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.122 0.878 47 H 0.377 0.623 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 0.248 3.376 3.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.578 6.578 9 C 0.011 3.989 10 C -0.020 4.020 11 O -0.208 6.208 12 C 0.061 3.939 13 C -0.203 4.203 14 C -0.075 4.075 15 C -0.134 4.134 16 C -0.184 4.184 17 O -0.343 6.343 18 Si 0.764 3.236 19 H -0.173 1.173 20 H -0.175 1.175 21 H -0.172 1.172 22 C -0.141 4.141 23 C 0.055 3.945 24 F -0.107 7.107 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.139 0.861 47 H 0.225 0.775 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.035 -0.191 2.361 2.585 hybrid contribution 0.632 0.966 0.486 1.252 sum -0.404 0.775 2.847 2.978 Atomic orbital electron populations 1.21511 0.93848 1.01967 1.01759 1.25770 1.00644 1.02589 1.12747 1.21557 1.00792 0.94902 1.02119 1.21508 1.00654 1.00320 0.96659 0.76742 0.63131 0.53304 0.65066 1.27042 1.07012 1.09619 1.17648 1.27026 1.24984 1.04675 1.04593 1.85408 1.79068 1.46034 1.47279 1.22081 0.99438 0.89592 0.87816 1.23103 0.99310 0.92067 0.87521 1.86219 1.64514 1.22613 1.47420 1.19053 0.95359 0.85173 0.94349 1.21240 1.00535 0.97017 1.01501 1.20874 0.97976 0.92673 0.96016 1.20038 0.98822 0.97556 0.96988 1.24875 1.06555 0.87909 0.99090 1.86517 1.30080 1.68490 1.49181 0.85785 0.80049 0.80991 0.76742 1.17315 1.17472 1.17217 1.20897 0.98878 0.93319 1.01001 1.16804 0.94987 0.91742 0.90960 1.91531 1.65026 1.83784 1.70370 0.92738 0.92782 0.92203 0.92512 0.92490 0.92549 0.92071 0.92821 0.92687 0.91511 0.90605 0.90833 0.90727 0.90738 0.91525 0.90230 0.91346 0.90409 0.90354 0.84102 0.84343 0.86062 0.77533 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.04 7.85 37.16 0.29 0.25 16 2 C -0.37 -0.02 0.53 -90.62 -0.05 -0.07 16 3 C -0.14 0.05 7.85 37.16 0.29 0.35 16 4 C -0.13 -0.12 7.85 37.16 0.29 0.17 16 5 Si 1.29 -1.24 8.45 -169.99 -1.44 -2.67 16 6 C -0.51 0.64 8.50 101.05 0.86 1.50 16 7 C -0.51 0.17 8.50 101.05 0.86 1.03 16 8 O -0.62 -0.31 8.52 -40.08 -0.34 -0.65 16 9 C 0.09 -0.12 5.50 37.15 0.20 0.08 16 10 C 0.06 -0.06 5.12 37.15 0.19 0.13 16 11 O -0.29 -0.73 9.97 -24.44 -0.24 -0.98 16 12 C 0.11 0.23 6.69 -39.18 -0.26 -0.04 16 13 C -0.18 0.04 9.04 -39.45 -0.36 -0.31 16 14 C -0.06 0.03 9.60 -39.59 -0.38 -0.35 16 15 C -0.13 0.01 5.39 -104.60 -0.56 -0.56 16 16 C -0.07 0.08 2.82 36.01 0.10 0.18 16 17 O -0.54 0.34 12.77 -35.23 -0.45 -0.11 16 18 Si 0.94 -0.73 25.07 -169.99 -4.26 -4.99 16 19 H -0.25 0.11 7.11 56.52 0.40 0.51 16 20 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 21 H -0.25 -0.01 7.11 56.52 0.40 0.40 16 22 C -0.12 -0.15 8.64 -39.54 -0.34 -0.49 16 23 C 0.07 0.23 7.31 -39.30 -0.29 -0.06 16 24 F -0.13 -0.62 17.11 2.25 0.04 -0.58 16 25 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 26 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 27 H 0.06 0.04 7.97 -51.92 -0.41 -0.38 16 28 H 0.06 -0.05 7.79 -51.92 -0.40 -0.46 16 29 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 31 H 0.06 0.10 7.96 -51.93 -0.41 -0.31 16 32 H 0.05 0.06 8.14 -51.93 -0.42 -0.37 16 33 H 0.05 0.03 7.79 -51.93 -0.40 -0.38 16 34 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 35 H 0.07 -0.10 7.79 -51.92 -0.40 -0.50 16 36 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 37 H 0.07 0.04 7.79 -51.93 -0.40 -0.37 16 38 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 40 H 0.08 -0.33 7.22 -51.92 -0.37 -0.70 16 41 H 0.07 -0.14 7.21 -51.93 -0.37 -0.51 16 42 H 0.08 -0.15 7.66 -51.93 -0.40 -0.55 16 43 H 0.08 -0.28 7.66 -51.93 -0.40 -0.68 16 44 H 0.14 -0.38 6.30 -52.49 -0.33 -0.71 16 45 H 0.14 -0.26 8.06 -52.49 -0.42 -0.69 16 46 H 0.12 -0.26 7.96 -51.93 -0.41 -0.67 16 47 H 0.38 -1.39 8.70 45.56 0.40 -0.99 16 48 H 0.14 0.02 4.88 -52.49 -0.26 -0.24 16 LS Contribution 387.68 15.07 5.84 5.84 Total: 0.00 -5.81 387.68 -7.48 -13.29 By element: Atomic # 1 Polarization: -3.49 SS G_CDS: -7.48 Total: -10.96 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 0.85 Total: 1.81 kcal Atomic # 8 Polarization: -0.71 SS G_CDS: -1.04 Total: -1.74 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.04 Total: -0.58 kcal Atomic # 14 Polarization: -1.96 SS G_CDS: -5.70 Total: -7.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -5.81 -7.48 -13.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_7834706_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.699 kcal (2) G-P(sol) polarization free energy of solvation -5.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds