Wall clock time and date at job start Mon Mar 8 2021 16:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 C 1.52998 * 109.47274 * 239.99811 * 2 1 3 5 5 Si 1.86309 * 109.47184 * 119.99753 * 2 1 3 6 6 C 1.86297 * 109.47041 * 300.00328 * 5 2 1 7 7 C 1.86296 * 109.47051 * 179.97438 * 5 2 1 8 8 O 1.63099 * 109.46983 * 59.99975 * 5 2 1 9 9 C 1.42892 * 114.00277 * 179.97438 * 8 5 2 10 10 C 1.52994 * 109.47478 * 180.02562 * 9 8 5 11 11 O 1.42898 * 109.47162 * 65.00627 * 10 9 8 12 12 C 1.35953 * 117.00080 * 179.97438 * 11 10 9 13 13 C 1.38621 * 120.06439 * 359.97438 * 12 11 10 14 14 C 1.38221 * 119.96962 * 180.02562 * 13 12 11 15 15 C 1.38223 * 120.09462 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93324 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 20 20 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 22 22 C 1.38297 * 120.12913 * 0.22850 * 15 14 13 23 23 C 1.38296 * 120.02466 * 359.49524 * 22 15 14 24 24 F 1.35095 * 120.04347 * 180.25545 * 23 22 15 25 25 H 1.09004 * 109.47147 * 299.99519 * 1 2 3 26 26 H 1.08997 * 109.46999 * 60.00220 * 1 2 3 27 27 H 1.09008 * 109.47116 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47043 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47087 * 299.99726 * 3 2 1 30 30 H 1.09000 * 109.47514 * 60.00345 * 3 2 1 31 31 H 1.08998 * 109.46868 * 299.99961 * 4 2 1 32 32 H 1.08997 * 109.47133 * 60.00051 * 4 2 1 33 33 H 1.08997 * 109.47502 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.46979 * 180.02562 * 6 5 2 35 35 H 1.09008 * 109.46858 * 299.99803 * 6 5 2 36 36 H 1.08997 * 109.47628 * 59.99659 * 6 5 2 37 37 H 1.08995 * 109.47505 * 300.00174 * 7 5 2 38 38 H 1.08998 * 109.47177 * 59.99910 * 7 5 2 39 39 H 1.08997 * 109.46867 * 180.02562 * 7 5 2 40 40 H 1.09009 * 109.46906 * 60.00302 * 9 8 5 41 41 H 1.09002 * 109.47340 * 300.00435 * 9 8 5 42 42 H 1.08997 * 109.47674 * 304.99798 * 10 9 8 43 43 H 1.09004 * 109.47270 * 185.00015 * 10 9 8 44 44 H 1.07999 * 120.01115 * 359.97438 * 13 12 11 45 45 H 1.07997 * 119.95705 * 179.97438 * 14 13 12 46 46 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 47 47 H 0.96698 * 114.00355 * 299.99977 * 17 16 15 48 48 H 1.07992 * 119.98853 * 179.74882 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6074 -2.4159 1.5213 9 6 2.0294 -3.1816 2.6515 10 6 1.4646 -4.5996 2.5466 11 8 2.0331 -5.2561 1.4118 12 6 1.6343 -6.5339 1.1740 13 6 0.7160 -7.1427 2.0152 14 6 0.3123 -8.4421 1.7719 15 6 0.8234 -9.1358 0.6911 16 6 0.3812 -10.5525 0.4296 17 8 0.7127 -11.3702 1.5536 18 14 1.2446 -11.2024 -1.0880 19 1 2.7135 -11.1742 -0.8720 20 1 0.8093 -12.5987 -1.3455 21 1 0.8996 -10.3525 -2.2560 22 6 1.7437 -8.5340 -0.1477 23 6 2.1469 -7.2322 0.0876 24 9 3.0420 -6.6423 -0.7345 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 1.8937 -0.5135 3.9323 35 1 1.8933 1.0278 3.0422 36 1 0.4400 0.0001 3.0423 37 1 4.3770 -1.3929 0.6309 38 1 4.3777 0.1487 1.5205 39 1 4.3773 -1.3930 2.4106 40 1 1.6653 -2.7117 3.5652 41 1 3.1183 -3.2255 2.6746 42 1 0.3815 -4.5519 2.4340 43 1 1.7117 -5.1569 3.4502 44 1 0.3168 -6.6023 2.8608 45 1 -0.4028 -8.9164 2.4276 46 1 -0.6970 -10.5732 0.2706 47 1 1.6583 -11.3988 1.7539 48 1 2.1446 -9.0795 -0.9891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_7834706_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:13:34 Heat of formation + Delta-G solvation = -185.145983 kcal Electronic energy + Delta-G solvation = -26708.184823 eV Core-core repulsion = 22801.499162 eV Total energy + Delta-G solvation = -3906.685661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.91001 -41.21444 -39.42392 -37.86125 -37.02261 -36.84423 -32.21709 -31.87663 -30.42747 -29.33056 -29.07670 -27.85429 -27.40051 -26.50361 -24.88253 -23.22654 -22.36536 -20.43489 -19.62572 -18.62032 -18.09205 -18.04385 -17.14376 -17.04835 -16.40351 -16.14763 -16.08989 -16.04012 -15.96214 -15.56251 -15.47782 -14.87066 -14.77061 -14.70455 -14.41363 -13.98368 -13.91672 -13.54351 -13.48853 -13.37568 -13.23791 -13.17992 -12.98298 -12.94586 -12.78958 -12.43775 -12.38374 -12.27044 -12.11197 -12.03684 -11.79141 -11.76874 -11.71318 -11.51783 -11.27677 -10.42285 -10.32658 -10.06833 -10.05350 -9.22497 0.01013 0.08185 1.17554 1.43536 1.50370 1.51639 1.76822 1.90651 2.03024 2.13293 2.42003 2.46621 3.11158 3.48171 3.54679 3.71865 3.95937 4.05740 4.08912 4.10306 4.10697 4.12545 4.28916 4.32494 4.44030 4.45944 4.61532 4.70254 4.73101 4.75673 4.77560 4.78624 4.79233 4.80719 4.82232 4.93600 4.97390 5.06852 5.07212 5.08519 5.18042 5.31724 5.32229 5.38359 5.41174 5.46624 5.56656 5.59910 5.64558 6.27626 6.71975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.136 4.136 5 Si 1.315 2.685 6 C -0.511 4.511 7 C -0.521 4.521 8 O -0.640 6.640 9 C 0.073 3.927 10 C 0.044 3.956 11 O -0.321 6.321 12 C 0.096 3.904 13 C -0.178 4.178 14 C -0.052 4.052 15 C -0.133 4.133 16 C -0.062 4.062 17 O -0.547 6.547 18 Si 0.964 3.036 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.263 1.263 22 C -0.127 4.127 23 C 0.039 3.961 24 F -0.149 7.149 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.168 0.832 45 H 0.160 0.840 46 H 0.136 0.864 47 H 0.390 0.610 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 0.219 5.527 5.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.427 4.427 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.445 2.555 6 C -0.614 4.614 7 C -0.622 4.622 8 O -0.600 6.600 9 C -0.002 4.002 10 C -0.030 4.030 11 O -0.235 6.235 12 C 0.049 3.951 13 C -0.196 4.196 14 C -0.070 4.070 15 C -0.133 4.133 16 C -0.174 4.174 17 O -0.354 6.354 18 Si 0.790 3.210 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.188 1.188 22 C -0.146 4.146 23 C 0.019 3.981 24 F -0.128 7.128 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.186 0.814 45 H 0.177 0.823 46 H 0.154 0.846 47 H 0.239 0.761 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.926 -0.219 4.499 4.899 hybrid contribution 0.924 0.948 -0.198 1.338 sum -1.002 0.729 4.302 4.477 Atomic orbital electron populations 1.21528 0.94086 1.01635 1.01993 1.25960 1.00555 1.03091 1.13093 1.21596 1.01155 0.94589 1.02351 1.21522 1.00798 0.99771 0.97260 0.76225 0.62089 0.52782 0.64440 1.26996 1.07069 1.09783 1.17532 1.27155 1.25969 1.04813 1.04232 1.85405 1.79339 1.46784 1.48444 1.22406 0.99827 0.89611 0.88395 1.23433 0.99713 0.92306 0.87518 1.86192 1.65314 1.22925 1.49058 1.19244 0.95964 0.85346 0.94549 1.21536 0.99396 0.97147 1.01546 1.21163 0.97648 0.92486 0.95703 1.20180 0.98267 0.98018 0.96862 1.24764 1.07182 0.87021 0.98387 1.86491 1.31460 1.68416 1.49034 0.85467 0.79492 0.79381 0.76630 1.18106 1.19375 1.18760 1.21000 0.99267 0.92858 1.01474 1.17225 0.96065 0.92840 0.91946 1.91464 1.65946 1.84248 1.71140 0.91577 0.93483 0.92798 0.92041 0.93226 0.91384 0.93192 0.93330 0.92491 0.90406 0.90312 0.90727 0.92053 0.90354 0.90933 0.87171 0.91246 0.89695 0.87685 0.81434 0.82252 0.84640 0.76091 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.16 7.85 71.98 0.56 0.40 16 2 C -0.38 -0.33 0.53 -10.80 -0.01 -0.33 16 3 C -0.14 0.07 7.85 71.98 0.56 0.63 16 4 C -0.14 -0.49 7.85 71.98 0.56 0.07 16 5 Si 1.31 -2.59 8.45 68.60 0.58 -2.01 16 6 C -0.51 2.01 8.50 113.37 0.96 2.97 16 7 C -0.52 0.15 8.50 113.37 0.96 1.11 16 8 O -0.64 -0.76 8.52 -144.34 -1.23 -1.99 16 9 C 0.07 -0.26 5.50 71.98 0.40 0.14 16 10 C 0.04 -0.14 5.12 71.98 0.37 0.23 16 11 O -0.32 -1.84 9.97 -88.39 -0.88 -2.73 16 12 C 0.10 0.46 6.69 22.53 0.15 0.61 16 13 C -0.18 0.29 9.04 22.36 0.20 0.49 16 14 C -0.05 0.13 9.60 22.26 0.21 0.35 16 15 C -0.13 0.08 5.39 -19.85 -0.11 -0.03 16 16 C -0.06 0.19 2.82 71.24 0.20 0.39 16 17 O -0.55 1.39 12.77 -148.98 -1.90 -0.52 16 18 Si 0.96 -0.94 25.07 68.60 1.72 0.78 16 19 H -0.26 -0.01 7.11 99.48 0.71 0.70 16 20 H -0.27 -0.52 7.11 99.48 0.71 0.18 16 21 H -0.26 -0.34 7.11 99.48 0.71 0.37 16 22 C -0.13 -0.43 8.64 22.30 0.19 -0.24 16 23 C 0.04 0.30 7.31 22.45 0.16 0.47 16 24 F -0.15 -1.86 17.11 44.97 0.77 -1.09 16 25 H 0.07 -0.09 7.79 -2.38 -0.02 -0.11 16 26 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.05 0.12 7.97 -2.38 -0.02 0.10 16 28 H 0.06 -0.10 7.79 -2.38 -0.02 -0.12 16 29 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 31 H 0.05 0.28 7.96 -2.39 -0.02 0.26 16 32 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.06 0.16 7.79 -2.39 -0.02 0.14 16 34 H 0.08 -0.46 7.48 -2.38 -0.02 -0.48 16 35 H 0.08 -0.33 7.79 -2.38 -0.02 -0.35 16 36 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 37 H 0.06 0.14 7.79 -2.39 -0.02 0.13 16 38 H 0.08 -0.11 7.79 -2.39 -0.02 -0.12 16 39 H 0.07 -0.12 7.48 -2.39 -0.02 -0.14 16 40 H 0.11 -1.12 7.22 -2.38 -0.02 -1.14 16 41 H 0.07 -0.29 7.21 -2.39 -0.02 -0.31 16 42 H 0.08 -0.42 7.66 -2.39 -0.02 -0.43 16 43 H 0.11 -0.95 7.66 -2.38 -0.02 -0.97 16 44 H 0.17 -1.29 6.30 -2.91 -0.02 -1.31 16 45 H 0.16 -1.05 8.06 -2.91 -0.02 -1.07 16 46 H 0.14 -0.78 7.96 -2.39 -0.02 -0.80 16 47 H 0.39 -3.25 8.70 -74.06 -0.64 -3.90 16 48 H 0.14 0.26 4.88 -2.91 -0.01 0.25 16 Total: 0.00 -15.13 387.68 5.50 -9.63 By element: Atomic # 1 Polarization: -10.38 SS G_CDS: 1.05 Total: -9.33 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.40 Total: 7.26 kcal Atomic # 8 Polarization: -1.22 SS G_CDS: -4.01 Total: -5.24 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.77 Total: -1.09 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.30 Total: -1.23 kcal Total: -15.13 5.50 -9.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_7834706_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.517 kcal (2) G-P(sol) polarization free energy of solvation -15.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds