Wall clock time and date at job start Mon Mar 8 2021 16:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.52999 * 109.47579 * 239.99841 * 2 1 3 5 5 O 1.42899 * 109.47139 * 119.99768 * 2 1 3 6 6 C 1.42902 * 113.99903 * 60.00203 * 5 2 1 7 7 H 1.08993 * 112.90736 * 341.24804 * 6 5 2 8 8 C 1.53962 * 113.66723 * 112.55150 * 6 5 2 9 9 C 1.53782 * 87.11063 * 139.88843 * 8 6 5 10 10 H 1.08997 * 113.61225 * 89.18406 * 9 8 6 11 11 C 1.53003 * 113.61259 * 220.08801 * 9 8 6 12 12 O 1.42901 * 109.47045 * 272.50005 * 11 9 8 13 13 C 1.35951 * 116.99605 * 180.02562 * 12 11 9 14 14 C 1.38911 * 120.05995 * 179.97438 * 13 12 11 15 15 F 1.35097 * 120.04918 * 359.97438 * 14 13 12 16 16 C 1.38331 * 119.90698 * 180.02562 * 14 13 12 17 17 C 1.38260 * 120.02732 * 0.02562 * 16 14 13 18 18 C 1.50700 * 119.93564 * 179.97438 * 17 16 14 19 19 O 1.42902 * 109.47356 * 64.99837 * 18 17 16 20 20 Si 1.86307 * 109.47040 * 184.99740 * 18 17 16 21 21 C 1.38261 * 120.12481 * 359.97438 * 17 16 14 22 22 C 1.38175 * 120.09685 * 359.72769 * 21 17 16 23 23 C 1.53781 * 87.08260 * 334.63747 * 9 8 6 24 24 H 1.09001 * 109.46922 * 299.99822 * 1 2 3 25 25 H 1.08991 * 109.47104 * 60.00121 * 1 2 3 26 26 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47169 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46848 * 299.99824 * 3 2 1 29 29 H 1.09002 * 109.47435 * 59.99884 * 3 2 1 30 30 H 1.09001 * 109.47230 * 300.00390 * 4 2 1 31 31 H 1.09005 * 109.46754 * 59.99352 * 4 2 1 32 32 H 1.08997 * 109.47569 * 180.02562 * 4 2 1 33 33 H 1.08997 * 113.53543 * 25.33518 * 8 6 5 34 34 H 1.08994 * 113.66446 * 254.45720 * 8 6 5 35 35 H 1.08994 * 109.47052 * 32.49864 * 11 9 8 36 36 H 1.09002 * 109.46569 * 152.49796 * 11 9 8 37 37 H 1.08001 * 119.99046 * 179.97438 * 16 14 13 38 38 H 1.08997 * 109.47425 * 304.99576 * 18 17 16 39 39 H 0.96702 * 113.99814 * 60.00211 * 19 18 17 40 40 H 1.48497 * 109.99702 * 58.68268 * 20 18 17 41 41 H 1.48499 * 109.99812 * 179.97438 * 20 18 17 42 42 H 1.08001 * 119.95005 * 179.97438 * 21 17 16 43 43 H 1.08001 * 120.01793 * 180.29679 * 22 21 17 44 44 H 1.09002 * 113.61445 * 139.98212 * 23 9 8 45 45 H 1.09002 * 113.61408 * 270.79943 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 1 0.7242 -2.2595 0.6341 8 6 2.7340 -3.0500 1.1226 9 6 2.0571 -3.8562 2.2436 10 1 1.3260 -4.5788 1.8813 11 6 3.0431 -4.4582 3.2467 12 8 3.4783 -5.7362 2.7784 13 6 4.3634 -6.4110 3.5592 14 6 4.8283 -7.6593 3.1651 15 9 4.4011 -8.2050 2.0054 16 6 5.7284 -8.3433 3.9622 17 6 6.1642 -7.7851 5.1497 18 6 7.1444 -8.5323 6.0168 19 8 8.3878 -8.6648 5.3250 20 14 7.4131 -7.5921 7.6026 21 6 5.7023 -6.5427 5.5431 22 6 4.8079 -5.8523 4.7479 23 6 1.4333 -2.5311 2.7124 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 3.7075 -2.6467 1.4014 34 1 2.7473 -3.5644 0.1617 35 1 3.9035 -3.7975 3.3518 36 1 2.5530 -4.5731 4.2136 37 1 6.0904 -9.3141 3.6573 38 1 6.7478 -9.5219 6.2439 39 1 8.7992 -7.8216 5.0907 40 1 6.1221 -7.4200 8.3159 41 1 8.3775 -8.3189 8.4668 42 1 6.0443 -6.1096 6.4715 43 1 4.4516 -4.8798 5.0541 44 1 0.3965 -2.6266 3.0351 45 1 2.0505 -1.9866 3.4271 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_7834706_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:33:46 Heat of formation + Delta-G solvation = -112.938451 kcal Electronic energy + Delta-G solvation = -25736.730441 eV Core-core repulsion = 21829.618896 eV Total energy + Delta-G solvation = -3907.111545 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.69957 -41.43834 -40.76267 -39.37496 -38.21238 -37.12387 -33.94127 -31.96673 -31.87865 -29.61794 -28.43156 -28.35411 -26.72482 -26.40477 -24.69359 -23.27348 -22.48192 -20.88075 -20.72497 -19.42346 -18.56031 -17.92934 -17.76404 -17.32715 -17.26237 -16.63151 -16.37109 -16.20369 -16.04835 -15.86779 -15.58345 -15.36290 -14.99092 -14.65147 -14.43695 -14.27769 -14.07292 -13.56088 -13.49529 -13.43578 -13.32835 -13.21523 -13.03022 -12.85744 -12.72577 -12.64996 -12.45615 -12.23608 -12.14201 -11.95778 -11.79453 -11.75919 -11.42035 -11.25031 -10.52012 -10.38618 -10.03182 -9.24376 -5.09695 0.01888 0.06699 1.22262 1.57851 1.90026 1.92939 2.38765 2.68464 3.14349 3.37659 3.39920 3.46628 3.53546 3.63529 3.69450 3.74541 3.84961 3.89875 3.92215 4.01662 4.05154 4.08033 4.14243 4.25157 4.40897 4.42331 4.50250 4.52965 4.60944 4.69118 4.71606 4.72844 4.76833 4.79074 4.85016 4.87854 4.89683 4.95526 4.99116 5.06311 5.09629 5.22904 5.24996 5.27087 5.32168 5.54960 6.21374 6.37216 6.52297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.361 6.361 6 C 0.062 3.938 7 H 0.093 0.907 8 C -0.148 4.148 9 C -0.110 4.110 10 H 0.105 0.895 11 C 0.070 3.930 12 O -0.304 6.304 13 C 0.107 3.893 14 C 0.070 3.930 15 F -0.130 7.130 16 C -0.089 4.089 17 C -0.132 4.132 18 C -0.065 4.065 19 O -0.539 6.539 20 Si 0.688 3.312 21 C -0.084 4.084 22 C -0.179 4.179 23 C -0.126 4.126 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.380 0.620 40 H -0.256 1.256 41 H -0.253 1.253 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.078 0.922 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 4.635 0.787 4.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.280 6.280 6 C 0.004 3.996 7 H 0.110 0.890 8 C -0.186 4.186 9 C -0.129 4.129 10 H 0.123 0.877 11 C -0.005 4.005 12 O -0.217 6.217 13 C 0.060 3.940 14 C 0.050 3.950 15 F -0.108 7.108 16 C -0.107 4.107 17 C -0.132 4.132 18 C -0.175 4.175 19 O -0.344 6.344 20 Si 0.590 3.410 21 C -0.102 4.102 22 C -0.197 4.197 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.133 0.867 39 H 0.227 0.773 40 H -0.181 1.181 41 H -0.178 1.178 42 H 0.154 0.846 43 H 0.160 0.840 44 H 0.096 0.904 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.753 4.022 1.643 4.409 hybrid contribution -0.637 -0.594 -0.627 1.073 sum -1.389 3.428 1.017 3.836 Atomic orbital electron populations 1.22472 0.95640 1.02459 1.03095 1.21543 0.93106 0.93255 0.85510 1.21771 1.02034 0.93191 1.02620 1.22473 1.02341 1.00783 0.97815 1.88029 1.73762 1.23332 1.42925 1.23589 0.97056 0.81868 0.97082 0.88967 1.23655 0.99424 0.96414 0.99071 1.22320 0.98008 0.95897 0.96664 0.87704 1.22920 0.97587 0.82069 0.97895 1.86160 1.57029 1.32255 1.46249 1.19029 0.92109 0.91383 0.91501 1.17013 1.00722 0.91641 0.85649 1.91529 1.88606 1.85152 1.45530 1.20885 0.95439 1.00739 0.93675 1.20090 1.00798 0.95770 0.96575 1.25033 0.84408 1.04876 1.03232 1.86522 1.33970 1.35173 1.78773 0.94797 0.82664 0.87685 0.75875 1.20847 0.96492 0.93735 0.99082 1.21116 1.01952 1.02052 0.94605 1.23227 1.01845 0.94107 0.97175 0.91599 0.91327 0.92231 0.91743 0.91045 0.91762 0.92279 0.91509 0.91643 0.89039 0.90859 0.91207 0.91371 0.83656 0.86721 0.77269 1.18117 1.17794 0.84650 0.83968 0.90354 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.16 8.38 37.16 0.31 0.47 16 2 C 0.10 -0.01 1.11 -90.62 -0.10 -0.11 16 3 C -0.14 0.07 8.84 37.16 0.33 0.40 16 4 C -0.18 0.11 8.38 37.16 0.31 0.42 16 5 O -0.36 -0.47 10.00 -35.23 -0.35 -0.82 16 6 C 0.06 -0.03 2.83 -25.82 -0.07 -0.10 16 7 H 0.09 -0.10 5.55 -51.93 -0.29 -0.39 16 8 C -0.15 0.06 7.47 -25.82 -0.19 -0.14 16 9 C -0.11 0.11 4.01 -89.80 -0.36 -0.25 16 10 H 0.10 -0.08 8.14 -51.93 -0.42 -0.51 16 11 C 0.07 -0.06 4.58 37.16 0.17 0.11 16 12 O -0.30 -0.69 10.00 -19.59 -0.20 -0.88 16 13 C 0.11 0.21 6.69 -39.18 -0.26 -0.06 16 14 C 0.07 0.20 7.31 -39.30 -0.29 -0.08 16 15 F -0.13 -0.62 17.11 2.25 0.04 -0.58 16 16 C -0.09 -0.12 9.66 -39.54 -0.38 -0.50 16 17 C -0.13 0.01 5.35 -104.61 -0.56 -0.55 16 18 C -0.06 0.04 2.80 36.01 0.10 0.14 16 19 O -0.54 0.05 12.83 -35.23 -0.45 -0.40 16 20 Si 0.69 -1.16 29.80 -169.99 -5.07 -6.23 16 21 C -0.08 0.09 8.66 -39.60 -0.34 -0.25 16 22 C -0.18 0.08 9.04 -39.45 -0.36 -0.28 16 23 C -0.13 0.18 7.47 -25.92 -0.19 -0.01 16 24 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 25 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.06 -0.07 6.25 -51.93 -0.32 -0.39 16 27 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 29 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.06 -0.04 7.02 -51.93 -0.36 -0.40 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 33 H 0.09 0.01 7.90 -51.93 -0.41 -0.40 16 34 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.07 -0.13 7.35 -51.93 -0.38 -0.51 16 36 H 0.07 -0.14 7.67 -51.93 -0.40 -0.54 16 37 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 38 H 0.12 -0.03 7.96 -51.93 -0.41 -0.45 16 39 H 0.38 -1.52 8.70 45.56 0.40 -1.12 16 40 H -0.26 -0.14 7.11 56.52 0.40 0.26 16 41 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 42 H 0.14 -0.47 4.90 -52.49 -0.26 -0.73 16 43 H 0.14 -0.39 6.30 -52.49 -0.33 -0.72 16 44 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 45 H 0.09 -0.13 8.10 -51.93 -0.42 -0.55 16 LS Contribution 363.71 15.07 5.48 5.48 Total: 0.00 -5.88 363.71 -9.48 -15.36 By element: Atomic # 1 Polarization: -4.11 SS G_CDS: -7.04 Total: -11.15 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.89 Total: -0.77 kcal Atomic # 8 Polarization: -1.10 SS G_CDS: -1.00 Total: -2.10 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.04 Total: -0.58 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.07 Total: -6.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -5.88 -9.48 -15.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_7834706_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.581 kcal (2) G-P(sol) polarization free energy of solvation -5.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds