Wall clock time and date at job start Mon Mar 8 2021 16:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86298 * 109.47157 * 2 1 4 4 C 1.86304 * 109.46961 * 239.99654 * 2 1 3 5 5 C 1.86300 * 109.46949 * 120.00042 * 2 1 3 6 6 O 1.42898 * 109.47183 * 66.67941 * 5 2 1 7 7 C 1.35956 * 116.99910 * 282.28148 * 6 5 2 8 8 C 1.38619 * 120.06224 * 353.82486 * 7 6 5 9 9 C 1.38231 * 119.96430 * 179.74667 * 8 7 6 10 10 C 1.38211 * 120.09933 * 0.52375 * 9 8 7 11 11 C 1.50700 * 119.94060 * 179.72912 * 10 9 8 12 12 O 1.42894 * 109.47440 * 120.02306 * 11 10 9 13 13 Si 1.86300 * 109.46790 * 0.02562 * 11 10 9 14 14 H 1.48497 * 109.47020 * 60.00516 * 13 11 10 15 15 H 1.48499 * 109.46961 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47385 * 299.99989 * 13 11 10 17 17 C 1.38305 * 120.12570 * 359.74809 * 10 9 8 18 18 C 1.38295 * 120.02788 * 359.97438 * 17 10 9 19 19 F 1.35100 * 120.04519 * 179.97438 * 18 17 10 20 20 H 1.09000 * 109.46439 * 295.85543 * 1 2 3 21 21 H 1.08996 * 109.46876 * 55.85572 * 1 2 3 22 22 H 1.08997 * 109.46912 * 175.85579 * 1 2 3 23 23 H 1.09006 * 109.47001 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47041 * 299.99752 * 3 2 1 25 25 H 1.08998 * 109.47262 * 60.00310 * 3 2 1 26 26 H 1.08993 * 109.47173 * 305.00409 * 4 2 1 27 27 H 1.09004 * 109.46386 * 65.00729 * 4 2 1 28 28 H 1.08994 * 109.46902 * 185.00202 * 4 2 1 29 29 H 1.09000 * 109.47079 * 306.67598 * 5 2 1 30 30 H 1.09002 * 109.47164 * 186.67764 * 5 2 1 31 31 H 1.07993 * 120.01598 * 0.02562 * 8 7 6 32 32 H 1.07997 * 119.94848 * 180.25094 * 9 8 7 33 33 H 1.09001 * 109.46885 * 240.02309 * 11 10 9 34 34 H 0.96703 * 113.99568 * 299.99551 * 12 11 10 35 35 H 1.08000 * 119.98603 * 179.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5211 6 8 2.1399 -2.2631 1.4454 7 6 0.8535 -2.5961 1.7328 8 6 -0.0247 -1.6322 2.2032 9 6 -1.3337 -1.9718 2.4898 10 6 -1.7655 -3.2735 2.3182 11 6 -3.1917 -3.6411 2.6375 12 8 -3.8275 -4.1480 1.4625 13 14 -4.1036 -2.1301 3.2343 14 1 -4.0859 -1.0905 2.1741 15 1 -5.5088 -2.4924 3.5495 16 1 -3.4429 -1.6033 4.4554 17 6 -0.8911 -4.2395 1.8544 18 6 0.4181 -3.9043 1.5607 19 9 1.2726 -4.8478 1.1081 20 1 -0.3632 0.4482 0.9248 21 1 -0.3633 0.5768 -0.8505 22 1 -0.3633 -1.0250 -0.0743 23 1 3.5741 1.7564 0.0005 24 1 2.1208 2.2702 -0.8900 25 1 2.1208 2.2703 0.8900 26 1 2.0494 -1.8768 -1.5670 27 1 2.1957 -0.3153 -2.4088 28 1 3.5703 -0.9566 -1.4774 29 1 2.0264 -0.4380 2.4071 30 1 3.5675 -0.7759 1.5829 31 1 0.3123 -0.6156 2.3415 32 1 -2.0188 -1.2199 2.8524 33 1 -3.2046 -4.4043 3.4156 34 1 -3.8524 -3.5206 0.7271 35 1 -1.2308 -5.2561 1.7216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_7834706_3095236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:13:09 Heat of formation + Delta-G solvation = -114.202283 kcal Electronic energy + Delta-G solvation = -17908.095629 eV Core-core repulsion = 14945.318986 eV Total energy + Delta-G solvation = -2962.776643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 258.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.89079 -41.26872 -39.19767 -37.13529 -32.09844 -31.92058 -29.65653 -28.44433 -28.31383 -28.08674 -26.11653 -23.86011 -22.48623 -19.53051 -18.48276 -18.04411 -17.45554 -17.23610 -16.17486 -16.11274 -15.96788 -15.75861 -15.45695 -14.95951 -14.31919 -14.12931 -13.91392 -13.82409 -13.64329 -13.46098 -13.26972 -13.20201 -13.06981 -12.90511 -12.68079 -12.36565 -12.19099 -12.02937 -11.56619 -10.86063 -10.80961 -10.76455 -10.40606 -9.95220 -9.08032 0.00327 0.08712 1.19449 1.50712 1.53320 1.54967 1.74216 1.84505 1.95871 2.33520 2.40271 2.57113 3.15692 3.49889 3.62034 3.74769 3.92730 4.09719 4.25860 4.45958 4.62122 4.68915 4.72506 4.74236 4.77851 4.82781 4.83768 4.86130 4.90815 4.93380 5.02621 5.25394 5.50762 5.55453 5.60283 5.64893 6.24094 6.72720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.054 2.946 3 C -0.452 4.452 4 C -0.468 4.468 5 C -0.270 4.270 6 O -0.308 6.308 7 C 0.088 3.912 8 C -0.171 4.171 9 C -0.094 4.094 10 C -0.130 4.130 11 C -0.079 4.079 12 O -0.554 6.554 13 Si 0.981 3.019 14 H -0.242 1.242 15 H -0.278 1.278 16 H -0.250 1.250 17 C -0.092 4.092 18 C 0.036 3.964 19 F -0.150 7.150 20 H 0.087 0.913 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.173 0.827 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.390 0.610 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 5.946 1.004 6.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.246 2.754 3 C -0.560 4.560 4 C -0.574 4.574 5 C -0.388 4.388 6 O -0.221 6.221 7 C 0.041 3.959 8 C -0.189 4.189 9 C -0.112 4.112 10 C -0.130 4.130 11 C -0.189 4.189 12 O -0.361 6.361 13 Si 0.804 3.196 14 H -0.165 1.165 15 H -0.203 1.203 16 H -0.174 1.174 17 C -0.111 4.111 18 C 0.017 3.983 19 F -0.129 7.129 20 H 0.106 0.894 21 H 0.096 0.904 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.190 0.810 32 H 0.168 0.832 33 H 0.142 0.858 34 H 0.239 0.761 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.665 5.960 1.614 6.395 hybrid contribution 0.787 -0.440 -0.609 1.088 sum -0.878 5.520 1.005 5.679 Atomic orbital electron populations 1.26583 1.20212 1.04506 1.05743 0.78878 0.67004 0.65649 0.63874 1.26091 1.06667 1.17824 1.05446 1.26347 1.06327 1.07805 1.16907 1.28683 1.08085 0.84252 1.17759 1.86085 1.23499 1.28664 1.83848 1.19217 0.85853 0.92741 0.98124 1.21478 0.93723 1.00604 1.03098 1.21158 0.95944 0.95845 0.98275 1.20193 0.97171 0.93154 1.02530 1.25083 0.90583 1.10926 0.92310 1.86498 1.79533 1.45592 1.24461 0.85254 0.78115 0.75429 0.80823 1.16548 1.20348 1.17352 1.20929 0.89705 1.01782 0.98692 1.17388 0.89185 0.84496 1.07257 1.91464 1.70214 1.63886 1.87305 0.89360 0.90433 0.91829 0.90869 0.90595 0.89971 0.92753 0.90848 0.91430 0.89060 0.86254 0.81034 0.83217 0.85755 0.76120 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.61 7.03 113.37 0.80 3.41 16 2 Si 1.05 -6.75 11.67 68.60 0.80 -5.95 16 3 C -0.45 3.19 8.65 113.37 0.98 4.17 16 4 C -0.47 0.23 8.65 113.37 0.98 1.21 16 5 C -0.27 0.93 5.31 113.37 0.60 1.53 16 6 O -0.31 -1.52 9.66 -93.05 -0.90 -2.42 16 7 C 0.09 0.37 5.80 22.53 0.13 0.50 16 8 C -0.17 0.27 5.62 22.36 0.13 0.40 16 9 C -0.09 0.23 8.66 22.26 0.19 0.43 16 10 C -0.13 0.06 5.39 -19.85 -0.11 -0.04 16 11 C -0.08 0.21 2.82 71.24 0.20 0.41 16 12 O -0.55 0.41 12.77 -148.98 -1.90 -1.49 16 13 Si 0.98 -3.88 25.07 68.60 1.72 -2.16 16 14 H -0.24 1.22 7.11 99.48 0.71 1.93 16 15 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 16 H -0.25 0.96 7.11 99.48 0.71 1.67 16 17 C -0.09 -0.31 9.58 22.30 0.21 -0.09 16 18 C 0.04 0.26 7.31 22.45 0.16 0.43 16 19 F -0.15 -1.79 17.11 44.97 0.77 -1.02 16 20 H 0.09 -0.77 6.52 -2.39 -0.02 -0.79 16 21 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 22 H 0.06 -0.16 6.50 -2.39 -0.02 -0.18 16 23 H 0.07 -0.49 7.96 -2.38 -0.02 -0.51 16 24 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 25 H 0.08 -0.71 7.96 -2.39 -0.02 -0.73 16 26 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 27 H 0.07 -0.10 7.96 -2.38 -0.02 -0.12 16 28 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 29 H 0.09 -0.67 6.08 -2.39 -0.01 -0.68 16 30 H 0.12 -0.63 7.96 -2.39 -0.02 -0.65 16 31 H 0.17 -1.31 4.23 -2.91 -0.01 -1.32 16 32 H 0.15 -1.04 4.87 -2.91 -0.01 -1.05 16 33 H 0.12 -0.48 7.96 -2.39 -0.02 -0.50 16 34 H 0.39 -2.82 8.70 -74.06 -0.64 -3.47 16 35 H 0.15 0.34 8.06 -2.91 -0.02 0.32 16 Total: 0.00 -13.07 289.04 5.98 -7.09 By element: Atomic # 1 Polarization: -7.59 SS G_CDS: 1.21 Total: -6.38 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 4.28 Total: 12.33 kcal Atomic # 8 Polarization: -1.11 SS G_CDS: -2.80 Total: -3.91 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.77 Total: -1.02 kcal Atomic # 14 Polarization: -10.64 SS G_CDS: 2.52 Total: -8.12 kcal Total: -13.07 5.98 -7.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_7834706_3095236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.116 kcal (2) G-P(sol) polarization free energy of solvation -13.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds