Wall clock time and date at job start Mon Mar 8 2021 17:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86300 * 109.47193 * 2 1 4 4 C 1.86294 * 109.47506 * 239.99945 * 2 1 3 5 5 C 1.86801 * 109.47321 * 119.99537 * 2 1 3 6 6 C 1.38240 * 119.99637 * 90.00049 * 5 2 1 7 7 C 1.38234 * 120.00050 * 180.02562 * 6 5 2 8 8 C 1.38236 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00064 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.47000 * 90.00106 * 9 8 7 11 11 C 1.35837 * 117.00265 * 179.97438 * 10 9 8 12 12 C 1.36622 * 120.21463 * 89.99998 * 11 10 9 13 13 C 1.50701 * 119.52740 * 359.95693 * 12 11 10 14 14 O 1.42900 * 109.46968 * 285.02314 * 13 12 11 15 15 Si 1.86294 * 109.47222 * 165.02127 * 13 12 11 16 16 H 1.48506 * 109.47103 * 60.00022 * 15 13 12 17 17 H 1.48498 * 109.47230 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47325 * 300.00365 * 15 13 12 19 19 C 1.39242 * 120.94353 * 179.97438 * 12 11 10 20 20 C 1.36239 * 121.04555 * 0.02562 * 19 12 11 21 21 Cl 1.73599 * 120.12628 * 179.97438 * 20 19 12 22 22 C 1.40657 * 119.74321 * 0.23165 * 20 19 12 23 23 C 1.40482 * 121.26608 * 180.32913 * 22 20 19 24 24 C 1.36143 * 119.64933 * 179.74714 * 23 22 20 25 25 C 1.39312 * 120.97325 * 359.68748 * 24 23 22 26 26 C 1.36167 * 120.97348 * 0.02562 * 25 24 23 27 27 C 1.40376 * 119.66220 * 0.02562 * 26 25 24 28 28 C 1.38237 * 120.00162 * 0.25585 * 8 7 6 29 29 C 1.38227 * 120.00387 * 270.02328 * 5 2 1 30 30 H 1.09000 * 109.46939 * 299.99984 * 1 2 3 31 31 H 1.08996 * 109.47263 * 60.00250 * 1 2 3 32 32 H 1.08999 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47529 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47236 * 300.00378 * 3 2 1 35 35 H 1.08998 * 109.47368 * 59.99660 * 3 2 1 36 36 H 1.08999 * 109.47095 * 299.99951 * 4 2 1 37 37 H 1.09006 * 109.46977 * 59.99594 * 4 2 1 38 38 H 1.08994 * 109.47945 * 179.97438 * 4 2 1 39 39 H 1.07995 * 120.00289 * 0.02562 * 6 5 2 40 40 H 1.07999 * 119.99980 * 179.97438 * 7 6 5 41 41 H 1.09001 * 109.47261 * 330.00320 * 9 8 7 42 42 H 1.09003 * 109.47803 * 209.99985 * 9 8 7 43 43 H 1.09010 * 109.47093 * 45.02227 * 13 12 11 44 44 H 0.96705 * 113.99195 * 179.97438 * 14 13 12 45 45 H 1.07996 * 119.47905 * 179.97438 * 19 12 11 46 46 H 1.08002 * 120.17660 * 359.43319 * 23 22 20 47 47 H 1.08000 * 119.51579 * 179.70211 * 24 23 22 48 48 H 1.08003 * 119.51123 * 180.02562 * 25 24 23 49 49 H 1.08002 * 120.17098 * 180.02562 * 26 25 24 50 50 H 1.07996 * 119.99999 * 179.72394 * 28 8 7 51 51 H 1.07999 * 120.00013 * 0.02562 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5210 5 6 2.4857 -0.8805 1.5253 6 6 2.7161 -2.2431 1.4911 7 6 3.1764 -2.8948 2.6199 8 6 3.4058 -2.1840 3.7831 9 6 3.9071 -2.8945 5.0139 10 8 5.3361 -2.8945 5.0151 11 6 5.9520 -3.4992 6.0640 12 6 6.2642 -4.8280 6.0049 13 6 5.9196 -5.6177 4.7685 14 8 4.5143 -5.8757 4.7444 15 14 6.8475 -7.2330 4.7846 16 1 6.4664 -8.0108 5.9909 17 1 6.5084 -8.0108 3.5660 18 1 8.3079 -6.9648 4.8097 19 6 6.8960 -5.4631 7.0709 20 6 7.2207 -4.7792 8.2036 21 17 8.0075 -5.5950 9.5185 22 6 6.9112 -3.4109 8.3056 23 6 7.2375 -2.6733 9.4558 24 6 6.9271 -1.3492 9.5173 25 6 6.2952 -0.7108 8.4525 26 6 5.9694 -1.3929 7.3200 27 6 6.2729 -2.7599 7.2208 28 6 3.1699 -0.8224 3.8190 29 6 2.7157 -0.1696 2.6882 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5739 1.7565 -0.0005 34 1 2.1206 2.2703 -0.8900 35 1 2.1206 2.2703 0.8899 36 1 2.1208 -1.9059 -1.5210 37 1 2.1207 -0.3644 -2.4111 38 1 3.5740 -0.8778 -1.5213 39 1 2.5365 -2.7985 0.5825 40 1 3.3560 -3.9594 2.5933 41 1 3.5438 -3.9222 5.0135 42 1 3.5431 -2.3808 5.9037 43 1 6.1994 -5.0467 3.8830 44 1 4.2205 -6.3810 3.9740 45 1 7.1315 -6.5146 6.9990 46 1 7.7275 -3.1553 10.2889 47 1 7.1747 -0.7853 10.4045 48 1 6.0602 0.3408 8.5264 49 1 5.4799 -0.8849 6.5022 50 1 3.3449 -0.2678 4.7290 51 1 2.5349 0.8948 2.7152 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_8272892_9276060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:54:25 Heat of formation + Delta-G solvation = -37.259709 kcal Electronic energy + Delta-G solvation = -32452.363224 eV Core-core repulsion = 28238.381404 eV Total energy + Delta-G solvation = -4213.981820 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 400.117 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.08798 -40.23297 -39.25252 -38.31965 -37.73465 -36.70890 -33.47843 -32.48838 -32.17206 -31.81936 -30.17630 -29.40616 -28.27719 -28.25537 -27.33121 -26.57407 -24.68002 -23.41586 -23.11034 -22.85570 -22.05209 -19.34290 -18.85684 -18.52490 -17.97481 -17.73728 -17.34227 -16.48671 -16.32215 -16.02715 -15.85348 -15.52142 -15.27568 -15.16697 -14.92026 -14.68823 -14.58272 -14.27622 -14.19670 -14.05588 -14.03732 -13.91560 -13.70003 -13.64739 -13.43368 -13.28676 -13.11920 -13.09785 -12.96522 -12.95166 -12.61365 -12.48344 -12.28519 -12.20057 -11.97125 -11.93045 -11.85450 -11.76798 -10.98296 -10.92283 -10.78100 -10.74046 -10.72684 -10.34753 -9.86352 -9.74212 -9.64951 -8.90094 -0.86129 -0.32214 0.23714 0.58472 0.72772 0.86961 1.07541 1.39137 1.43055 1.59065 1.83962 1.87144 2.04523 2.09510 2.47954 2.69122 2.84499 3.08824 3.22678 3.41389 3.65444 3.72590 3.83679 3.88711 3.92316 4.06425 4.11502 4.20541 4.24239 4.30166 4.33964 4.35491 4.55479 4.59779 4.62200 4.71205 4.78577 4.86046 4.86475 4.89962 4.90361 4.91189 4.91836 4.92315 4.93806 5.02452 5.07176 5.22541 5.26006 5.38756 5.42656 5.46406 5.60768 5.62077 5.68588 5.69256 5.73421 5.79864 6.18413 6.32343 6.74653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.461 4.461 5 C -0.375 4.375 6 C -0.104 4.104 7 C -0.116 4.116 8 C -0.097 4.097 9 C 0.108 3.892 10 O -0.327 6.327 11 C 0.139 3.861 12 C -0.101 4.101 13 C -0.072 4.072 14 O -0.553 6.553 15 Si 0.967 3.033 16 H -0.260 1.260 17 H -0.242 1.242 18 H -0.261 1.261 19 C -0.106 4.106 20 C -0.034 4.034 21 Cl -0.052 7.052 22 C -0.047 4.047 23 C -0.119 4.119 24 C -0.100 4.100 25 C -0.108 4.108 26 C -0.105 4.105 27 C -0.077 4.077 28 C -0.125 4.125 29 C -0.104 4.104 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.399 0.601 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.155 0.845 48 H 0.154 0.846 49 H 0.138 0.862 50 H 0.125 0.875 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 1.836 -2.721 3.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.414 4.414 6 C -0.121 4.121 7 C -0.134 4.134 8 C -0.097 4.097 9 C 0.035 3.965 10 O -0.245 6.245 11 C 0.095 3.905 12 C -0.102 4.102 13 C -0.182 4.182 14 O -0.363 6.363 15 Si 0.790 3.210 16 H -0.185 1.185 17 H -0.166 1.166 18 H -0.185 1.185 19 C -0.124 4.124 20 C -0.060 4.060 21 Cl -0.023 7.023 22 C -0.048 4.048 23 C -0.137 4.137 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.078 4.078 28 C -0.143 4.143 29 C -0.122 4.122 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.249 0.751 45 H 0.162 0.838 46 H 0.161 0.839 47 H 0.173 0.827 48 H 0.171 0.829 49 H 0.156 0.844 50 H 0.143 0.857 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.476 1.354 -2.138 2.930 hybrid contribution -0.027 -0.279 0.196 0.342 sum -1.503 1.075 -1.942 2.681 Atomic orbital electron populations 1.26282 1.21588 1.04486 1.04516 0.77177 0.65182 0.64570 0.61780 1.26292 1.06350 1.19559 1.04810 1.26268 1.06366 1.08540 1.15690 1.27999 1.02639 0.99743 1.11042 1.21397 0.97394 0.95117 0.98241 1.21382 0.98815 1.00670 0.92573 1.19634 1.00852 0.94343 0.94889 1.21808 0.77653 1.01441 0.95620 1.85984 1.20518 1.76864 1.41137 1.18238 0.95361 0.89999 0.86934 1.19291 1.01669 0.93176 0.96051 1.24602 0.88866 1.07742 0.97000 1.86423 1.20356 1.78420 1.51072 0.85469 0.78755 0.75808 0.80998 1.18458 1.16565 1.18477 1.20684 0.99195 1.00805 0.91764 1.20656 1.01710 0.92481 0.91177 1.98375 1.78534 1.78201 1.47143 1.17869 0.99618 0.91788 0.95476 1.21294 1.00390 0.95249 0.96768 1.21322 0.96390 0.94364 0.99685 1.21317 0.97034 1.01647 0.92593 1.21111 0.99801 0.92057 0.99295 1.18418 1.01005 0.95552 0.92791 1.21364 0.99540 0.93880 0.99497 1.21351 0.97564 1.00606 0.92693 0.91456 0.90720 0.91334 0.91412 0.90706 0.90971 0.90795 0.90715 0.91366 0.84230 0.84940 0.89530 0.92542 0.89215 0.75054 0.83836 0.83942 0.82733 0.82853 0.84380 0.85739 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.73 8.65 113.37 0.98 2.71 16 2 Si 1.13 -6.49 12.32 68.60 0.85 -5.65 16 3 C -0.46 1.89 8.53 113.37 0.97 2.86 16 4 C -0.46 2.08 8.53 113.37 0.97 3.05 16 5 C -0.37 0.25 4.59 22.27 0.10 0.36 16 6 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 7 C -0.12 -0.23 9.70 22.27 0.22 -0.01 16 8 C -0.10 -0.37 5.51 -19.87 -0.11 -0.48 16 9 C 0.11 0.44 6.12 71.24 0.44 0.87 16 10 O -0.33 -2.20 8.50 -91.72 -0.78 -2.98 16 11 C 0.14 1.03 5.67 22.57 0.13 1.16 16 12 C -0.10 -0.61 5.27 -20.00 -0.11 -0.72 16 13 C -0.07 -0.07 2.31 71.24 0.16 0.09 16 14 O -0.55 0.43 10.68 -148.98 -1.59 -1.16 16 15 Si 0.97 0.01 25.45 68.60 1.75 1.76 16 16 H -0.26 -0.61 6.71 99.48 0.67 0.06 16 17 H -0.24 0.38 7.11 99.48 0.71 1.08 16 18 H -0.26 -0.64 7.11 99.48 0.71 0.07 16 19 C -0.11 -0.67 8.33 22.05 0.18 -0.49 16 20 C -0.03 -0.23 6.32 22.39 0.14 -0.09 16 21 Cl -0.05 -0.26 27.50 -2.72 -0.07 -0.34 16 22 C -0.05 -0.33 5.74 -21.29 -0.12 -0.45 16 23 C -0.12 -0.42 9.44 22.33 0.21 -0.21 16 24 C -0.10 -0.02 9.95 22.04 0.22 0.20 16 25 C -0.11 -0.03 9.95 22.05 0.22 0.19 16 26 C -0.10 -0.39 9.56 22.31 0.21 -0.18 16 27 C -0.08 -0.55 5.75 -21.23 -0.12 -0.68 16 28 C -0.12 -0.36 9.70 22.27 0.22 -0.14 16 29 C -0.10 -0.09 9.29 22.27 0.21 0.12 16 30 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 31 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 34 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 35 H 0.07 -0.32 7.69 -2.39 -0.02 -0.34 16 36 H 0.07 -0.38 7.69 -2.39 -0.02 -0.40 16 37 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 38 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 39 H 0.14 -0.62 7.43 -2.91 -0.02 -0.64 16 40 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.09 0.34 5.87 -2.39 -0.01 0.32 16 42 H 0.06 0.21 8.08 -2.39 -0.02 0.19 16 43 H 0.09 -0.05 7.78 -2.38 -0.02 -0.07 16 44 H 0.40 -3.90 8.74 -74.05 -0.65 -4.55 16 45 H 0.14 0.58 4.78 -2.91 -0.01 0.57 16 46 H 0.14 0.19 6.98 -2.91 -0.02 0.17 16 47 H 0.16 -0.81 8.06 -2.91 -0.02 -0.83 16 48 H 0.15 -0.78 8.06 -2.91 -0.02 -0.81 16 49 H 0.14 0.29 7.62 -2.91 -0.02 0.27 16 50 H 0.12 0.04 8.06 -2.91 -0.02 0.02 16 51 H 0.14 -0.44 7.43 -2.91 -0.02 -0.46 16 Total: 0.00 -14.09 431.65 6.48 -7.60 By element: Atomic # 1 Polarization: -8.60 SS G_CDS: 1.02 Total: -7.59 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.32 Total: 8.36 kcal Atomic # 8 Polarization: -1.77 SS G_CDS: -2.37 Total: -4.14 kcal Atomic # 14 Polarization: -6.48 SS G_CDS: 2.59 Total: -3.89 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.07 Total: -0.34 kcal Total: -14.09 6.48 -7.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8272892_9276060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.657 kcal (2) G-P(sol) polarization free energy of solvation -14.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds