Wall clock time and date at job start Mon Mar 8 2021 14:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86295 * 109.47139 * 2 1 4 4 C 1.86293 * 109.46983 * 239.99869 * 2 1 3 5 5 C 1.86306 * 109.47093 * 120.00067 * 2 1 3 6 6 O 1.42902 * 109.47177 * 66.58255 * 5 2 1 7 7 C 1.35890 * 117.00094 * 282.07564 * 6 5 2 8 8 C 1.38621 * 120.02726 * 353.84919 * 7 6 5 9 9 C 1.38651 * 119.88841 * 179.97438 * 8 7 6 10 10 O 1.35902 * 120.02504 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99722 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.38242 * 119.99631 * 269.73017 * 12 11 10 14 14 C 1.38227 * 119.99659 * 179.76572 * 13 12 11 15 15 C 1.38239 * 120.00088 * 0.50063 * 14 13 12 16 16 C 1.38235 * 120.00249 * 359.74966 * 15 14 13 17 17 C 1.38227 * 119.99964 * 89.99438 * 12 11 10 18 18 C 1.38757 * 119.95060 * 0.02562 * 9 8 7 19 19 C 1.38204 * 120.05000 * 359.74123 * 18 9 8 20 20 C 1.38157 * 120.10656 * 0.51733 * 19 18 9 21 21 C 1.50701 * 119.96745 * 179.76324 * 20 19 18 22 22 O 1.42895 * 109.46986 * 254.72121 * 21 20 19 23 23 Si 1.86296 * 109.47224 * 14.72072 * 21 20 19 24 24 H 1.48504 * 109.47066 * 60.00280 * 23 21 20 25 25 H 1.48500 * 109.47013 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47488 * 299.99945 * 23 21 20 27 27 H 1.09004 * 109.46881 * 295.55389 * 1 2 3 28 28 H 1.08994 * 109.47364 * 55.54829 * 1 2 3 29 29 H 1.08998 * 109.47207 * 175.56029 * 1 2 3 30 30 H 1.09010 * 109.47156 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47405 * 300.00055 * 3 2 1 32 32 H 1.08996 * 109.47129 * 60.00503 * 3 2 1 33 33 H 1.09002 * 109.47432 * 305.00157 * 4 2 1 34 34 H 1.08998 * 109.47290 * 65.00482 * 4 2 1 35 35 H 1.08999 * 109.47505 * 185.00488 * 4 2 1 36 36 H 1.09002 * 109.47222 * 306.58394 * 5 2 1 37 37 H 1.08999 * 109.47140 * 186.58640 * 5 2 1 38 38 H 1.07990 * 120.05303 * 359.95685 * 8 7 6 39 39 H 1.08997 * 109.47130 * 299.99585 * 11 10 9 40 40 H 1.08994 * 109.47715 * 59.99967 * 11 10 9 41 41 H 1.07995 * 120.00005 * 359.97438 * 13 12 11 42 42 H 1.07996 * 120.00307 * 180.22621 * 14 13 12 43 43 H 1.08003 * 119.99736 * 179.72920 * 15 14 13 44 44 H 1.07990 * 119.99972 * 179.97438 * 16 15 14 45 45 H 1.08003 * 120.00561 * 0.02562 * 17 12 11 46 46 H 1.07996 * 119.97270 * 180.02562 * 18 9 8 47 47 H 1.07998 * 119.94648 * 180.27439 * 19 18 9 48 48 H 1.08997 * 109.46935 * 134.72213 * 21 20 19 49 49 H 0.96695 * 114.00465 * 60.00067 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5212 6 8 2.1380 -2.2628 1.4465 7 6 0.8530 -2.5942 1.7391 8 6 -0.0216 -1.6288 2.2131 9 6 -1.3322 -1.9700 2.5103 10 8 -2.1922 -1.0256 2.9746 11 6 -3.5270 -1.4482 3.2606 12 6 -4.3293 -0.2745 3.7605 13 6 -4.3793 0.0022 5.1140 14 6 -5.1112 1.0816 5.5721 15 6 -5.8016 1.8782 4.6778 16 6 -5.7558 1.5984 3.3248 17 6 -5.0195 0.5220 2.8662 18 6 -1.7651 -3.2763 2.3332 19 6 -0.8925 -4.2359 1.8560 20 6 0.4153 -3.8996 1.5642 21 6 1.3656 -4.9496 1.0490 22 8 2.2704 -5.3248 2.0894 23 14 0.3999 -6.4441 0.4971 24 1 -0.5404 -6.0542 -0.5842 25 1 1.3363 -7.4785 -0.0112 26 1 -0.3660 -6.9906 1.6459 27 1 -0.3633 0.4433 0.9272 28 1 -0.3634 0.5813 -0.8474 29 1 -0.3633 -1.0246 -0.0795 30 1 3.5741 1.7564 -0.0005 31 1 2.1207 2.2703 -0.8899 32 1 2.1208 2.2702 0.8900 33 1 2.0493 -1.8768 -1.5670 34 1 2.1957 -0.3153 -2.4088 35 1 3.5703 -0.9566 -1.4775 36 1 2.0277 -0.4370 2.4073 37 1 3.5676 -0.7773 1.5821 38 1 0.3174 -0.6128 2.3509 39 1 -3.9858 -1.8414 2.3534 40 1 -3.5063 -2.2261 4.0238 41 1 -3.8437 -0.6229 5.8131 42 1 -5.1473 1.3001 6.6291 43 1 -6.3770 2.7190 5.0362 44 1 -6.2955 2.2205 2.6263 45 1 -4.9843 0.3030 1.8092 46 1 -2.7860 -3.5424 2.5642 47 1 -1.2325 -5.2512 1.7146 48 1 1.9278 -4.5485 0.2057 49 1 1.8385 -5.6909 2.8733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_8697348_3095236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:34:45 Heat of formation + Delta-G solvation = -83.826878 kcal Electronic energy + Delta-G solvation = -28503.514450 eV Core-core repulsion = 24713.309349 eV Total energy + Delta-G solvation = -3790.205102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70739 -40.53283 -39.55890 -38.20984 -36.83829 -33.44089 -31.91557 -31.90764 -31.17125 -29.71608 -28.47106 -28.37500 -27.91753 -27.45374 -26.03150 -23.60131 -23.44873 -22.56763 -21.93531 -19.83201 -18.42305 -17.88275 -17.46323 -17.21401 -17.10696 -16.79221 -16.48739 -16.26876 -15.76228 -15.51780 -15.47348 -15.17931 -14.84275 -14.40771 -14.33025 -14.21682 -13.95742 -13.91320 -13.90358 -13.71806 -13.67314 -13.42195 -13.34076 -13.21962 -13.08232 -12.93643 -12.65459 -12.36333 -12.18443 -12.10771 -12.03743 -11.83114 -11.72882 -11.52684 -10.94826 -10.83982 -10.67913 -10.22906 -9.91703 -9.88732 -9.40510 -8.88686 0.18739 0.30671 0.40777 0.42575 1.23894 1.45401 1.47711 1.57325 1.67598 1.76344 1.97231 2.13177 2.49404 2.49963 2.69805 2.91828 3.58875 3.65520 3.73118 3.78678 3.90456 3.99608 4.09010 4.11107 4.13960 4.14842 4.19134 4.36920 4.47160 4.50763 4.53909 4.62267 4.64928 4.65711 4.69073 4.76059 4.77054 4.79307 4.82107 4.84266 4.93481 5.02765 5.10981 5.34079 5.35203 5.41233 5.44647 5.51953 5.52929 5.53708 5.57743 5.60607 5.96476 6.29113 6.48885 6.73542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 0.985 3.015 3 C -0.447 4.447 4 C -0.442 4.442 5 C -0.249 4.249 6 O -0.274 6.274 7 C 0.189 3.811 8 C -0.241 4.241 9 C 0.175 3.825 10 O -0.305 6.305 11 C 0.101 3.899 12 C -0.099 4.099 13 C -0.095 4.095 14 C -0.123 4.123 15 C -0.108 4.108 16 C -0.123 4.123 17 C -0.095 4.095 18 C -0.243 4.243 19 C -0.051 4.051 20 C -0.192 4.192 21 C -0.063 4.063 22 O -0.535 6.535 23 Si 0.944 3.056 24 H -0.249 1.249 25 H -0.253 1.253 26 H -0.253 1.253 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.144 0.856 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.116 0.884 49 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 1.372 0.240 3.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.182 2.818 3 C -0.555 4.555 4 C -0.550 4.550 5 C -0.369 4.369 6 O -0.186 6.186 7 C 0.142 3.858 8 C -0.260 4.260 9 C 0.129 3.871 10 O -0.219 6.219 11 C 0.027 3.973 12 C -0.099 4.099 13 C -0.113 4.113 14 C -0.141 4.141 15 C -0.127 4.127 16 C -0.141 4.141 17 C -0.113 4.113 18 C -0.262 4.262 19 C -0.069 4.069 20 C -0.194 4.194 21 C -0.174 4.174 22 O -0.339 6.339 23 Si 0.767 3.233 24 H -0.172 1.172 25 H -0.177 1.177 26 H -0.177 1.177 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.162 0.838 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.149 0.851 47 H 0.148 0.852 48 H 0.134 0.866 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.577 0.929 -0.449 2.776 hybrid contribution -0.455 0.362 0.751 0.950 sum -3.032 1.290 0.302 3.309 Atomic orbital electron populations 1.26432 1.19464 1.04898 1.04673 0.79906 0.68248 0.66841 0.66851 1.26054 1.06432 1.18184 1.04869 1.25989 1.06379 1.08196 1.14443 1.28234 1.06931 0.86043 1.15723 1.86142 1.23669 1.25995 1.82751 1.18404 0.83591 0.92102 0.91677 1.20510 0.92380 1.01248 1.11837 1.18626 0.89278 0.87493 0.91695 1.86156 1.20980 1.35598 1.79130 1.21634 0.80001 0.95061 1.00620 1.19448 0.99075 0.97529 0.93855 1.21102 0.98102 0.97321 0.94814 1.21205 0.97509 0.95292 1.00097 1.21300 0.98591 0.99284 0.93477 1.21207 0.99410 0.97550 0.95935 1.21101 0.96256 0.94462 0.99477 1.21060 1.01443 0.92685 1.11032 1.20700 0.91797 0.99152 0.95205 1.19487 0.95381 0.93648 1.10855 1.24724 0.96317 1.02078 0.94262 1.86554 1.34613 1.84302 1.28444 0.85835 0.78889 0.77711 0.80887 1.17241 1.17708 1.17696 0.90738 0.91226 0.90818 0.90974 0.90708 0.91035 0.90870 0.91111 0.91024 0.90847 0.87217 0.83834 0.90791 0.90809 0.85768 0.85597 0.85691 0.85599 0.85758 0.85086 0.85161 0.86643 0.78219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.14 7.04 101.05 0.71 0.85 16 2 Si 0.98 -1.71 11.68 -169.99 -1.99 -3.69 16 3 C -0.45 0.68 8.65 101.05 0.87 1.55 16 4 C -0.44 0.24 8.65 101.05 0.87 1.11 16 5 C -0.25 0.08 5.31 101.05 0.54 0.61 16 6 O -0.27 -0.64 9.12 -19.39 -0.18 -0.82 16 7 C 0.19 0.43 5.76 -39.24 -0.23 0.21 16 8 C -0.24 -0.44 5.58 -39.29 -0.22 -0.66 16 9 C 0.18 0.33 6.68 -39.24 -0.26 0.07 16 10 O -0.31 -0.62 10.12 -19.43 -0.20 -0.81 16 11 C 0.10 -0.01 4.87 36.01 0.18 0.17 16 12 C -0.10 -0.08 5.51 -104.62 -0.58 -0.65 16 13 C -0.10 -0.05 9.70 -39.58 -0.38 -0.44 16 14 C -0.12 -0.03 10.05 -39.59 -0.40 -0.42 16 15 C -0.11 -0.01 10.05 -39.58 -0.40 -0.41 16 16 C -0.12 -0.02 10.05 -39.58 -0.40 -0.42 16 17 C -0.09 -0.05 9.70 -39.58 -0.38 -0.44 16 18 C -0.24 -0.20 9.04 -39.40 -0.36 -0.56 16 19 C -0.05 -0.04 8.65 -39.62 -0.34 -0.38 16 20 C -0.19 -0.34 5.28 -104.45 -0.55 -0.89 16 21 C -0.06 -0.07 2.37 36.01 0.09 0.01 16 22 O -0.53 -1.08 12.88 -35.23 -0.45 -1.54 16 23 Si 0.94 0.15 25.48 -169.99 -4.33 -4.18 16 24 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 25 H -0.25 -0.41 7.11 56.52 0.40 0.00 16 26 H -0.25 0.07 6.74 56.52 0.38 0.45 16 27 H 0.07 0.00 6.50 -51.93 -0.34 -0.34 16 28 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 29 H 0.07 0.05 6.55 -51.93 -0.34 -0.28 16 30 H 0.07 -0.12 7.96 -51.92 -0.41 -0.54 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 34 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 35 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 36 H 0.07 -0.06 6.06 -51.93 -0.31 -0.38 16 37 H 0.11 -0.15 7.96 -51.93 -0.41 -0.57 16 38 H 0.14 0.11 4.24 -52.49 -0.22 -0.12 16 39 H 0.07 -0.10 7.60 -51.93 -0.39 -0.49 16 40 H 0.07 -0.10 7.60 -51.93 -0.39 -0.49 16 41 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 42 H 0.13 -0.19 8.06 -52.49 -0.42 -0.62 16 43 H 0.13 -0.21 8.06 -52.48 -0.42 -0.63 16 44 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 45 H 0.12 -0.10 8.06 -52.48 -0.42 -0.52 16 46 H 0.13 -0.15 6.29 -52.49 -0.33 -0.48 16 47 H 0.13 -0.11 4.87 -52.49 -0.26 -0.36 16 48 H 0.12 0.12 7.82 -51.93 -0.41 -0.28 16 49 H 0.37 -0.50 8.70 45.56 0.40 -0.11 16 LS Contribution 393.39 15.07 5.93 5.93 Total: 0.00 -5.99 393.39 -9.29 -15.29 By element: Atomic # 1 Polarization: -2.65 SS G_CDS: -6.84 Total: -9.49 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.24 Total: -0.69 kcal Atomic # 8 Polarization: -2.34 SS G_CDS: -0.83 Total: -3.17 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: -6.32 Total: -7.87 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -5.99 -9.29 -15.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8697348_3095236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.539 kcal (2) G-P(sol) polarization free energy of solvation -5.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds