Wall clock time and date at job start Tue Mar 9 2021 12:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.47009 * 2 1 4 4 C 1.50694 * 109.47253 * 119.99977 * 2 1 3 5 5 C 1.34531 * 120.20939 * 249.97594 * 4 2 1 6 6 O 1.33715 * 122.85749 * 180.02562 * 5 4 2 7 7 C 1.34881 * 122.40384 * 359.73206 * 6 5 4 8 8 C 1.40418 * 119.68308 * 0.52398 * 7 6 5 9 9 C 1.39395 * 120.23273 * 179.71967 * 8 7 6 10 10 C 1.37848 * 119.52599 * 359.74678 * 9 8 7 11 11 Br 1.89096 * 119.85848 * 180.02562 * 10 9 8 12 12 C 1.38834 * 120.27893 * 0.02562 * 10 9 8 13 13 C 1.37828 * 120.70039 * 359.97438 * 12 10 9 14 14 C 1.50703 * 120.03966 * 179.97438 * 13 12 10 15 15 O 1.45198 * 109.47002 * 359.97438 * 14 13 12 16 16 C 1.34232 * 117.00045 * 179.97438 * 15 14 13 17 17 O 1.20816 * 119.99720 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00108 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.46798 * 300.00462 * 18 16 15 20 20 C 1.53005 * 109.47049 * 60.00050 * 18 16 15 21 21 C 1.52998 * 109.46925 * 179.97438 * 20 18 16 22 22 C 1.52997 * 109.47136 * 300.00333 * 21 20 18 23 23 H 1.09001 * 109.46981 * 299.99736 * 22 21 20 24 24 O 1.42901 * 109.46751 * 180.02562 * 22 21 20 25 25 C 1.42905 * 114.00134 * 90.00001 * 24 22 21 26 26 F 1.39900 * 109.46866 * 300.00196 * 25 24 22 27 27 F 1.39897 * 109.46886 * 59.99655 * 25 24 22 28 28 C 1.52999 * 109.47104 * 60.00310 * 22 21 20 29 29 C 1.52994 * 109.47095 * 299.99590 * 28 22 21 30 30 C 1.42009 * 120.20009 * 70.00083 * 4 2 1 31 31 O 1.21916 * 121.40567 * 359.95974 * 30 4 2 32 32 H 0.96698 * 114.00093 * 299.99699 * 1 2 3 33 33 H 1.09007 * 109.46980 * 240.00399 * 2 1 3 34 34 H 1.48503 * 110.00071 * 178.68201 * 3 2 1 35 35 H 1.48503 * 110.00187 * 300.00196 * 3 2 1 36 36 H 1.08007 * 118.57059 * 0.04981 * 5 4 2 37 37 H 1.08007 * 120.23243 * 179.77479 * 9 8 7 38 38 H 1.08000 * 119.64823 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.46688 * 239.99827 * 14 13 12 40 40 H 1.08991 * 109.47242 * 119.99451 * 14 13 12 41 41 H 1.08994 * 109.46763 * 300.00205 * 20 18 16 42 42 H 1.08994 * 109.46854 * 59.99862 * 20 18 16 43 43 H 1.09000 * 109.46743 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.46697 * 60.00549 * 21 20 18 45 45 H 1.09000 * 109.47187 * 179.97438 * 25 24 22 46 46 H 1.08994 * 109.47290 * 60.00026 * 28 22 21 47 47 H 1.09006 * 109.46511 * 180.02562 * 28 22 21 48 48 H 1.08995 * 109.47297 * 180.02562 * 29 28 22 49 49 H 1.09008 * 109.47372 * 300.00484 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.5324 -0.0171 2.2143 6 8 2.9980 -0.5931 3.3276 7 6 2.8956 -1.9190 3.5527 8 6 2.2906 -2.7430 2.5900 9 6 2.1839 -4.1156 2.8081 10 6 2.6812 -4.6590 3.9733 11 35 2.5421 -6.5199 4.2787 12 6 3.2837 -3.8457 4.9236 13 6 3.3947 -2.4872 4.7186 14 6 4.0510 -1.6183 5.7604 15 8 4.4785 -2.4412 6.8777 16 6 5.0864 -1.8156 7.8979 17 8 5.2551 -0.6199 7.8588 18 6 5.5573 -2.6044 9.0925 19 1 4.7062 -3.1016 9.5579 20 6 6.5765 -3.6528 8.6419 21 6 7.0550 -4.4532 9.8548 22 6 7.7085 -3.5074 10.8644 23 1 8.5593 -3.0103 10.3986 24 8 8.1559 -4.2552 11.9970 25 6 9.4944 -4.7420 11.8802 26 9 9.5891 -5.5833 10.7665 27 9 10.3712 -3.6629 11.7254 28 6 6.6892 -2.4592 11.3151 29 6 6.2107 -1.6587 10.1022 30 6 1.7738 -2.1159 1.3582 31 8 1.2340 -2.7764 0.4871 32 1 -0.3933 0.4416 0.7650 33 1 1.7924 -0.5138 -0.8901 34 1 3.5346 1.7704 0.0321 35 1 1.5615 2.4680 -1.2085 36 1 2.6432 1.0512 2.1002 37 1 1.7154 -4.7489 2.0692 38 1 3.6694 -4.2821 5.8331 39 1 3.3390 -0.8712 6.1113 40 1 4.9163 -1.1190 5.3245 41 1 6.1110 -4.3262 7.9223 42 1 7.4275 -3.1555 8.1764 43 1 7.7808 -5.2003 9.5337 44 1 6.2042 -4.9504 10.3206 45 1 9.7585 -5.2981 12.7797 46 1 5.8384 -2.9564 11.7809 47 1 7.1550 -1.7851 12.0340 48 1 5.4849 -0.9116 10.4233 49 1 7.0615 -1.1615 9.6363 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_1458_13021786_484008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:12 Heat of formation + Delta-G solvation = -285.554910 kcal Electronic energy + Delta-G solvation = -41326.011317 eV Core-core repulsion = 35288.729063 eV Total energy + Delta-G solvation = -6037.282253 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 489.046 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -50.04606 -48.16185 -43.34922 -41.89765 -40.18901 -40.15043 -39.73459 -38.01293 -37.79577 -37.16349 -34.63721 -33.69495 -33.16633 -31.93480 -31.62503 -30.72738 -28.33070 -27.48268 -26.65591 -25.88682 -24.57745 -24.38180 -23.82179 -22.53811 -22.05416 -21.05040 -20.66404 -19.55646 -19.31024 -19.06531 -18.77934 -18.63295 -18.49828 -17.97422 -17.78663 -17.58289 -17.41880 -16.80052 -16.50698 -16.32523 -16.19161 -16.05745 -15.72436 -15.49728 -15.39365 -15.32548 -15.28567 -15.00432 -14.77325 -14.61318 -14.49255 -14.41080 -14.28973 -14.11291 -14.05143 -13.89122 -13.72361 -13.47350 -13.27939 -13.12458 -12.79502 -12.56942 -12.45922 -12.43228 -12.26520 -12.15578 -12.10356 -12.05271 -11.81524 -11.53612 -11.50980 -11.34347 -11.26925 -10.94881 -10.70715 -10.44705 -10.41658 -9.59042 -5.14480 -0.85635 -0.70830 0.03408 0.33504 0.96841 1.10353 1.15591 1.37662 1.39660 1.58470 1.96463 2.03732 2.26986 2.67429 2.75959 2.85717 3.18606 3.31674 3.42275 3.48186 3.53246 3.57359 3.65733 3.72227 3.74031 3.82059 3.86980 3.97581 3.98127 4.04897 4.09648 4.11265 4.15525 4.19017 4.27013 4.28075 4.31982 4.43135 4.54902 4.55899 4.62989 4.65197 4.75350 4.78103 4.84899 5.02109 5.05073 5.08153 5.10136 5.22345 5.25564 5.31191 5.64436 5.74373 6.31046 6.62614 6.75662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.063 4.063 3 Si 0.803 3.197 4 C -0.341 4.341 5 C 0.179 3.821 6 O -0.200 6.200 7 C 0.166 3.834 8 C -0.227 4.227 9 C -0.010 4.010 10 C -0.121 4.121 11 Br -0.025 7.025 12 C -0.007 4.007 13 C -0.096 4.096 14 C 0.116 3.884 15 O -0.351 6.351 16 C 0.475 3.525 17 O -0.527 6.527 18 C -0.077 4.077 19 H 0.137 0.863 20 C -0.105 4.105 21 C -0.138 4.138 22 C 0.069 3.931 23 H 0.065 0.935 24 O -0.387 6.387 25 C 0.397 3.603 26 F -0.218 7.218 27 F -0.222 7.222 28 C -0.107 4.107 29 C -0.098 4.098 30 C 0.423 3.577 31 O -0.498 6.498 32 H 0.395 0.605 33 H 0.089 0.911 34 H -0.258 1.258 35 H -0.296 1.296 36 H 0.247 0.753 37 H 0.143 0.857 38 H 0.178 0.822 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.206 0.794 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 3.583 8.260 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.170 4.170 3 Si 0.704 3.296 4 C -0.344 4.344 5 C 0.113 3.887 6 O -0.103 6.103 7 C 0.120 3.880 8 C -0.229 4.229 9 C -0.030 4.030 10 C -0.200 4.200 11 Br 0.061 6.939 12 C -0.027 4.027 13 C -0.098 4.098 14 C 0.043 3.957 15 O -0.267 6.267 16 C 0.319 3.681 17 O -0.416 6.416 18 C -0.096 4.096 19 H 0.155 0.845 20 C -0.142 4.142 21 C -0.175 4.175 22 C 0.013 3.987 23 H 0.083 0.917 24 O -0.309 6.309 25 C 0.306 3.694 26 F -0.200 7.200 27 F -0.204 7.204 28 C -0.145 4.145 29 C -0.136 4.136 30 C 0.310 3.690 31 O -0.381 6.381 32 H 0.245 0.755 33 H 0.107 0.893 34 H -0.184 1.184 35 H -0.224 1.224 36 H 0.262 0.738 37 H 0.161 0.839 38 H 0.195 0.805 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.222 0.778 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.162 3.253 7.220 8.209 hybrid contribution 0.049 -0.504 -1.474 1.558 sum 2.211 2.749 5.747 6.743 Atomic orbital electron populations 1.86551 1.17630 1.82293 1.50133 1.25214 0.85257 1.11613 0.94906 0.94451 0.77902 0.70909 0.86370 1.21966 1.13664 0.96047 1.02742 1.24424 0.85311 0.98713 0.80209 1.83169 1.68003 1.20502 1.38618 1.18868 0.95196 0.80626 0.93275 1.20733 1.08448 0.95337 0.98432 1.21113 0.93149 0.93339 0.95436 1.21864 1.07174 0.92888 0.98103 1.96847 1.97480 1.03401 1.96221 1.21246 0.92060 0.90906 0.98444 1.18855 1.03500 0.93991 0.93415 1.21584 1.00320 0.90768 0.83018 1.86400 1.69708 1.42340 1.28299 1.24072 0.73473 0.87048 0.83527 1.90707 1.53656 1.17388 1.79802 1.21278 1.01407 0.96601 0.90285 0.84521 1.21480 0.97870 0.96754 0.98131 1.22113 1.02224 0.98045 0.95156 1.22509 0.97673 0.92548 0.85979 0.91685 1.88432 1.28166 1.71274 1.42987 1.23847 0.77694 0.78578 0.89252 1.93040 1.95804 1.72059 1.59082 1.93042 1.71033 1.59575 1.96774 1.21542 0.98743 0.96378 0.97811 1.21379 1.01131 0.97007 0.94084 1.18802 0.76389 0.89310 0.84542 1.90750 1.37357 1.67718 1.42284 0.75549 0.89347 1.18437 1.22388 0.73770 0.83913 0.80495 0.87702 0.88135 0.88476 0.91652 0.90738 0.89327 0.77814 0.89299 0.90361 0.89794 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.92 12.88 -148.98 -1.92 -3.84 16 2 C -0.06 -0.05 2.46 71.23 0.17 0.12 16 3 Si 0.80 -5.64 29.86 68.60 2.05 -3.59 16 4 C -0.34 -0.03 5.32 -19.78 -0.11 -0.14 16 5 C 0.18 -1.43 9.99 66.97 0.67 -0.76 16 6 O -0.20 1.18 9.21 -2.70 -0.02 1.16 16 7 C 0.17 -0.24 6.74 22.98 0.15 -0.09 16 8 C -0.23 -0.87 5.89 -20.01 -0.12 -0.99 16 9 C -0.01 -0.04 9.40 22.46 0.21 0.17 16 10 C -0.12 -0.09 6.22 22.32 0.14 0.05 16 11 Br -0.03 -0.02 33.69 -20.37 -0.69 -0.71 16 12 C -0.01 0.02 9.10 22.32 0.20 0.22 16 13 C -0.10 0.33 5.89 -19.78 -0.12 0.21 16 14 C 0.12 -0.60 5.38 71.24 0.38 -0.22 16 15 O -0.35 1.58 8.58 -51.44 -0.44 1.14 16 16 C 0.47 -1.22 7.25 71.24 0.52 -0.70 16 17 O -0.53 -1.80 15.73 22.00 0.35 -1.46 16 18 C -0.08 0.51 2.63 -11.54 -0.03 0.48 16 19 H 0.14 -1.44 8.14 -2.39 -0.02 -1.46 16 20 C -0.10 0.72 5.14 30.60 0.16 0.88 16 21 C -0.14 0.74 5.39 30.59 0.16 0.90 16 22 C 0.07 -0.22 2.40 30.59 0.07 -0.14 16 23 H 0.07 -0.08 7.20 -2.39 -0.02 -0.10 16 24 O -0.39 0.67 10.29 -148.98 -1.53 -0.86 16 25 C 0.40 -1.44 6.26 113.37 0.71 -0.73 16 26 F -0.22 0.04 15.46 44.97 0.70 0.74 16 27 F -0.22 -0.23 16.63 44.97 0.75 0.52 16 28 C -0.11 0.57 5.57 30.59 0.17 0.74 16 29 C -0.10 0.49 4.49 30.59 0.14 0.63 16 30 C 0.42 3.35 6.98 25.67 0.18 3.53 16 31 O -0.50 -8.33 16.93 -5.04 -0.09 -8.42 16 32 H 0.39 -2.84 8.70 -74.06 -0.64 -3.48 16 33 H 0.09 0.55 7.96 -2.38 -0.02 0.53 16 34 H -0.26 1.32 7.11 99.48 0.71 2.03 16 35 H -0.30 -0.60 7.11 99.48 0.71 0.11 16 36 H 0.25 -4.32 4.77 -2.91 -0.01 -4.34 16 37 H 0.14 0.85 7.81 -2.91 -0.02 0.83 16 38 H 0.18 -1.09 6.96 -2.91 -0.02 -1.11 16 39 H 0.11 -0.68 8.13 -2.39 -0.02 -0.69 16 40 H 0.10 -0.58 8.13 -2.39 -0.02 -0.60 16 41 H 0.10 -0.85 8.11 -2.39 -0.02 -0.87 16 42 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.07 -0.24 6.50 -2.39 -0.02 -0.25 16 44 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 45 H 0.21 -2.44 8.14 -2.39 -0.02 -2.46 16 46 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 47 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 48 H 0.08 -0.38 8.10 -2.39 -0.02 -0.40 16 49 H 0.07 -0.16 8.10 -2.38 -0.02 -0.18 16 Total: 0.00 -28.82 435.31 3.27 -25.55 By element: Atomic # 1 Polarization: -14.85 SS G_CDS: 0.45 Total: -14.40 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 3.67 Total: 4.17 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -3.66 Total: -12.27 kcal Atomic # 9 Polarization: -0.19 SS G_CDS: 1.44 Total: 1.26 kcal Atomic # 14 Polarization: -5.64 SS G_CDS: 2.05 Total: -3.59 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -28.82 3.27 -25.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_1458_13021786_484008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -260.003 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds