Wall clock time and date at job start Tue Mar 9 2021 12:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86298 * 109.46863 * 2 1 4 4 C 1.86297 * 109.47331 * 240.00364 * 2 1 3 5 5 C 1.86797 * 109.47086 * 119.99916 * 2 1 3 6 6 C 1.38234 * 119.99988 * 90.00248 * 5 2 1 7 7 C 1.38235 * 120.00428 * 180.02562 * 6 5 2 8 8 C 1.38232 * 119.99515 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99688 * 179.97438 * 8 7 6 10 10 N 1.46493 * 109.47380 * 90.00119 * 9 8 7 11 11 C 1.34783 * 120.00427 * 179.97438 * 10 9 8 12 12 O 1.21591 * 119.99468 * 359.97438 * 11 10 9 13 13 C 1.47576 * 120.00318 * 180.02562 * 11 10 9 14 14 C 1.36495 * 120.00824 * 180.02562 * 13 11 10 15 15 N 1.35940 * 120.50290 * 179.97438 * 14 13 11 16 16 C 1.36999 * 132.41397 * 179.97438 * 15 14 13 17 17 C 1.50701 * 126.42589 * 0.02562 * 16 15 14 18 18 O 1.42896 * 109.47417 * 330.00365 * 17 16 15 19 19 Si 1.86301 * 109.47149 * 210.00349 * 17 16 15 20 20 H 1.48506 * 109.47302 * 59.99966 * 19 17 16 21 21 H 1.48503 * 109.47334 * 300.00099 * 19 17 16 22 22 H 1.48500 * 109.47376 * 180.02562 * 19 17 16 23 23 C 1.35004 * 107.14687 * 180.28179 * 16 15 14 24 24 N 1.33587 * 108.65456 * 359.57066 * 23 16 15 25 25 C 1.32419 * 109.22142 * 0.43301 * 24 23 16 26 26 C 1.41251 * 132.12097 * 179.70545 * 25 24 23 27 27 Br 1.89102 * 120.24963 * 0.05937 * 26 25 24 28 28 C 1.35702 * 119.49226 * 180.02562 * 26 25 24 29 29 C 1.38237 * 120.00408 * 0.25253 * 8 7 6 30 30 C 1.38233 * 119.99779 * 359.49563 * 29 8 7 31 31 H 1.09001 * 109.47219 * 299.99593 * 1 2 3 32 32 H 1.09002 * 109.47363 * 59.99982 * 1 2 3 33 33 H 1.09003 * 109.46799 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47439 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47616 * 300.00337 * 3 2 1 36 36 H 1.09007 * 109.47284 * 60.00112 * 3 2 1 37 37 H 1.09007 * 109.46715 * 300.00052 * 4 2 1 38 38 H 1.09002 * 109.47180 * 59.99541 * 4 2 1 39 39 H 1.08992 * 109.47186 * 180.02562 * 4 2 1 40 40 H 1.08001 * 119.99820 * 0.02562 * 6 5 2 41 41 H 1.07994 * 120.00211 * 179.97438 * 7 6 5 42 42 H 1.09001 * 109.47142 * 329.99637 * 9 8 7 43 43 H 1.09008 * 109.46995 * 210.00175 * 9 8 7 44 44 H 0.96997 * 120.00024 * 0.02562 * 10 9 8 45 45 H 1.07994 * 119.74676 * 359.97438 * 14 13 11 46 46 H 1.09002 * 109.46793 * 90.00818 * 17 16 15 47 47 H 0.96708 * 114.00095 * 299.99924 * 18 17 16 48 48 H 1.07995 * 125.67809 * 179.69754 * 23 16 15 49 49 H 1.07995 * 120.23388 * 180.02562 * 28 26 25 50 50 H 1.07999 * 120.00227 * 179.71994 * 29 8 7 51 51 H 1.07997 * 120.00490 * 180.22658 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7161 -2.2431 1.4910 7 6 3.1764 -2.8949 2.6198 8 6 3.4067 -2.1840 3.7827 9 6 3.9079 -2.8946 5.0134 10 7 5.3729 -2.8957 5.0142 11 6 6.0459 -3.4793 6.0257 12 8 5.4370 -4.0044 6.9378 13 6 7.5217 -3.4798 6.0268 14 6 8.2033 -4.0712 7.0508 15 7 9.5627 -4.0781 7.0616 16 6 10.4771 -4.5880 7.9452 17 6 10.1715 -5.3255 9.2234 18 8 8.9324 -4.8569 9.7591 19 14 11.5351 -5.0229 10.4562 20 1 11.6355 -3.5679 10.7362 21 1 12.8228 -5.5098 9.8996 22 1 11.2343 -5.7501 11.7155 23 6 11.7034 -4.3008 7.4590 24 7 11.5621 -3.6421 6.3054 25 6 10.2727 -3.4915 6.0444 26 6 9.5885 -2.8735 4.9743 27 35 10.5563 -2.0624 3.5666 28 6 8.2316 -2.8669 4.9638 29 6 3.1718 -0.8222 3.8183 30 6 2.7165 -0.1695 2.6880 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.5739 1.7566 0.0005 35 1 2.1206 2.2704 -0.8900 36 1 2.1206 2.2703 0.8900 37 1 2.1207 -1.9058 -1.5212 38 1 2.1207 -0.3643 -2.4111 39 1 3.5740 -0.8785 -1.5209 40 1 2.5365 -2.7985 0.5823 41 1 3.3560 -3.9595 2.5931 42 1 3.5438 -3.9220 5.0134 43 1 3.5445 -2.3804 5.9032 44 1 5.8585 -2.4758 4.2871 45 1 7.6586 -4.5372 7.8585 46 1 10.0979 -6.3934 9.0179 47 1 8.9255 -3.9123 9.9662 48 1 12.6424 -4.5621 7.9240 49 1 7.6963 -2.3982 4.1513 50 1 3.3475 -0.2675 4.7282 51 1 2.5365 0.8950 2.7147 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_10854838_12335884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:30 Heat of formation + Delta-G solvation = 16.193298 kcal Electronic energy + Delta-G solvation = -33649.425914 eV Core-core repulsion = 29105.928428 eV Total energy + Delta-G solvation = -4543.497486 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 461.068 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.30321 -41.29098 -39.97987 -38.52228 -38.01280 -36.24015 -35.28208 -33.06468 -32.07582 -31.83093 -31.66941 -30.28798 -29.41165 -28.27468 -28.26014 -27.43184 -26.87100 -25.07820 -24.12525 -23.42508 -22.61426 -22.08923 -21.89081 -19.58432 -19.01798 -18.30290 -17.82760 -17.55070 -17.30876 -16.93966 -16.68626 -16.33446 -15.97718 -15.96871 -15.80239 -15.68693 -15.36227 -15.08378 -14.76999 -14.46716 -14.30552 -14.15559 -14.01599 -13.89389 -13.85787 -13.65892 -13.46365 -13.41633 -13.36212 -13.13250 -13.09993 -13.03627 -12.95077 -12.72380 -12.63322 -12.11553 -12.06910 -11.89320 -11.63358 -11.44958 -11.37878 -11.30807 -10.89724 -10.88361 -10.74035 -10.73954 -10.37380 -10.05555 -9.76153 -9.64214 -9.11625 -0.93248 -0.41574 0.14540 0.21830 0.56468 0.87650 1.09474 1.34774 1.50940 1.57206 1.74481 1.86716 1.91061 1.97653 2.04338 2.18049 2.19742 2.68675 2.76962 2.95588 3.07977 3.18548 3.35676 3.43950 3.47496 3.66113 3.82171 3.94149 4.09458 4.19199 4.25305 4.35966 4.38175 4.43269 4.48646 4.58682 4.64663 4.78352 4.85498 4.85748 4.89848 4.91266 4.91603 4.91906 4.92531 5.04519 5.15070 5.21578 5.23621 5.44197 5.53812 5.60739 5.61850 5.65533 5.68975 5.73573 6.16112 6.25277 6.36581 6.46274 6.90659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.371 4.371 6 C -0.101 4.101 7 C -0.121 4.121 8 C -0.109 4.109 9 C 0.165 3.835 10 N -0.703 5.703 11 C 0.579 3.421 12 O -0.563 6.563 13 C -0.169 4.169 14 C 0.164 3.836 15 N -0.357 5.357 16 C -0.082 4.082 17 C -0.052 4.052 18 O -0.551 6.551 19 Si 1.012 2.988 20 H -0.262 1.262 21 H -0.237 1.237 22 H -0.260 1.260 23 C 0.030 3.970 24 N -0.494 5.494 25 C 0.226 3.774 26 C -0.080 4.080 27 Br 0.005 6.995 28 C -0.024 4.024 29 C -0.120 4.120 30 C -0.101 4.101 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.413 0.587 45 H 0.198 0.802 46 H 0.139 0.861 47 H 0.390 0.610 48 H 0.211 0.789 49 H 0.180 0.820 50 H 0.129 0.871 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.167 1.908 -1.984 3.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.119 4.119 7 C -0.139 4.139 8 C -0.109 4.109 9 C 0.042 3.958 10 N -0.355 5.355 11 C 0.366 3.634 12 O -0.443 6.443 13 C -0.177 4.177 14 C 0.037 3.963 15 N -0.030 5.030 16 C -0.193 4.193 17 C -0.161 4.161 18 O -0.357 6.357 19 Si 0.831 3.169 20 H -0.186 1.186 21 H -0.160 1.160 22 H -0.184 1.184 23 C -0.120 4.120 24 N -0.213 5.213 25 C -0.020 4.020 26 C -0.162 4.162 27 Br 0.090 6.910 28 C -0.050 4.050 29 C -0.139 4.139 30 C -0.119 4.119 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.251 0.749 45 H 0.214 0.786 46 H 0.156 0.844 47 H 0.239 0.761 48 H 0.228 0.772 49 H 0.198 0.802 50 H 0.146 0.854 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.050 1.566 -1.716 2.550 hybrid contribution -0.775 0.043 0.271 0.822 sum -1.825 1.610 -1.446 2.831 Atomic orbital electron populations 1.26332 1.22016 1.04379 1.04459 0.77153 0.64928 0.64645 0.61932 1.26289 1.06500 1.19430 1.04766 1.26292 1.06498 1.08451 1.15768 1.27892 1.02566 0.99655 1.11023 1.21368 0.97170 0.95054 0.98315 1.21363 0.99303 1.00334 0.92916 1.19784 1.02122 0.94331 0.94671 1.20233 0.78593 1.00892 0.96059 1.45815 1.07434 1.57568 1.24687 1.17536 0.85634 0.78159 0.82110 1.90854 1.69821 1.46633 1.36951 1.19219 0.94030 1.07155 0.97277 1.22284 0.80642 0.94012 0.99337 1.42715 1.05847 1.36921 1.17493 1.22480 0.88509 1.10249 0.98097 1.25072 0.97257 1.01327 0.92442 1.86500 1.33821 1.31180 1.84227 0.84844 0.75251 0.80534 0.76302 1.18553 1.16038 1.18411 1.22939 0.98013 0.98341 0.92675 1.70817 1.13206 1.20257 1.16976 1.20689 0.88153 1.01544 0.91598 1.20543 0.94079 1.06123 0.95492 1.96836 1.75151 1.78475 1.40518 1.21321 0.91057 0.94922 0.97704 1.21366 0.99278 0.93863 0.99355 1.21372 0.97168 1.00682 0.92666 0.91451 0.90890 0.91472 0.91145 0.90898 0.90943 0.90968 0.90897 0.91151 0.84618 0.85434 0.90526 0.90418 0.74904 0.78552 0.84368 0.76116 0.77198 0.80233 0.85353 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.11 8.65 113.37 0.98 3.09 16 2 Si 1.13 -8.39 12.32 68.60 0.85 -7.54 16 3 C -0.46 2.69 8.53 113.37 0.97 3.66 16 4 C -0.46 2.66 8.53 113.37 0.97 3.63 16 5 C -0.37 1.39 4.59 22.27 0.10 1.50 16 6 C -0.10 0.30 9.29 22.27 0.21 0.50 16 7 C -0.12 0.26 9.70 22.27 0.22 0.47 16 8 C -0.11 0.22 5.25 -19.87 -0.10 0.12 16 9 C 0.16 -0.25 5.80 85.63 0.50 0.25 16 10 N -0.70 1.80 5.50 -469.95 -2.58 -0.78 16 11 C 0.58 1.26 7.76 86.71 0.67 1.93 16 12 O -0.56 -5.24 16.27 -4.00 -0.07 -5.31 16 13 C -0.17 -0.10 5.84 -20.35 -0.12 -0.22 16 14 C 0.16 0.33 9.91 83.65 0.83 1.16 16 15 N -0.36 -1.34 2.93 -337.71 -0.99 -2.33 16 16 C -0.08 -0.11 6.25 41.01 0.26 0.14 16 17 C -0.05 0.18 3.06 71.24 0.22 0.40 16 18 O -0.55 1.20 10.90 -148.98 -1.62 -0.43 16 19 Si 1.01 -4.79 26.59 68.60 1.82 -2.97 16 20 H -0.26 0.65 7.11 99.48 0.71 1.35 16 21 H -0.24 1.33 6.84 99.48 0.68 2.01 16 22 H -0.26 0.51 7.11 99.48 0.71 1.22 16 23 C 0.03 0.09 10.44 83.68 0.87 0.97 16 24 N -0.49 -4.32 11.30 -194.10 -2.19 -6.52 16 25 C 0.23 1.54 7.59 134.18 1.02 2.55 16 26 C -0.08 -0.28 6.24 22.42 0.14 -0.14 16 27 Br 0.00 0.02 33.72 -20.37 -0.69 -0.67 16 28 C -0.02 0.03 9.26 22.55 0.21 0.24 16 29 C -0.12 0.27 9.70 22.27 0.22 0.49 16 30 C -0.10 0.31 9.29 22.27 0.21 0.51 16 31 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.07 -0.38 7.96 -2.39 -0.02 -0.39 16 35 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 36 H 0.07 -0.44 7.69 -2.38 -0.02 -0.46 16 37 H 0.07 -0.43 7.69 -2.38 -0.02 -0.45 16 38 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 39 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 40 H 0.14 -0.85 7.43 -2.91 -0.02 -0.87 16 41 H 0.13 -0.52 8.06 -2.91 -0.02 -0.54 16 42 H 0.08 -0.02 8.09 -2.39 -0.02 -0.04 16 43 H 0.08 -0.03 8.08 -2.38 -0.02 -0.05 16 44 H 0.41 -2.84 6.50 -92.71 -0.60 -3.44 16 45 H 0.20 0.33 6.19 -2.91 -0.02 0.31 16 46 H 0.14 -0.79 7.96 -2.39 -0.02 -0.81 16 47 H 0.39 -2.83 8.70 -74.05 -0.64 -3.47 16 48 H 0.21 -0.60 6.71 -2.91 -0.02 -0.62 16 49 H 0.18 -1.39 6.44 -2.91 -0.02 -1.41 16 50 H 0.13 -0.56 8.06 -2.91 -0.02 -0.58 16 51 H 0.14 -0.88 7.43 -2.91 -0.02 -0.90 16 Total: 0.00 -19.92 447.03 3.35 -16.57 By element: Atomic # 1 Polarization: -11.77 SS G_CDS: 0.47 Total: -11.30 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 8.35 Total: 21.27 kcal Atomic # 7 Polarization: -3.86 SS G_CDS: -5.77 Total: -9.63 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -1.69 Total: -5.73 kcal Atomic # 14 Polarization: -13.18 SS G_CDS: 2.67 Total: -10.51 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.67 kcal Total: -19.92 3.35 -16.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_10854838_12335884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.763 kcal (2) G-P(sol) polarization free energy of solvation -19.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds