Wall clock time and date at job start Tue Mar 9 2021 12:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28468 * 124.88202 * 2 1 4 4 C 1.31814 * 110.07177 * 179.97438 * 3 2 1 5 5 C 1.47706 * 126.51555 * 179.97438 * 4 3 2 6 6 O 1.21575 * 120.00205 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00380 * 0.03083 * 5 4 3 8 8 C 1.46500 * 120.00340 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47438 * 179.97438 * 8 7 5 10 10 C 1.38228 * 119.99867 * 269.73023 * 9 8 7 11 11 C 1.38241 * 119.99971 * 179.76644 * 10 9 8 12 12 C 1.38233 * 119.99679 * 0.49916 * 11 10 9 13 13 Si 1.86805 * 119.99937 * 179.72663 * 12 11 10 14 14 C 1.86292 * 109.47094 * 270.02625 * 13 12 11 15 15 C 1.86302 * 109.47073 * 30.02516 * 13 12 11 16 16 C 1.86301 * 109.47167 * 150.02471 * 13 12 11 17 17 C 1.38239 * 120.00153 * 359.75043 * 12 11 10 18 18 C 1.38233 * 119.99714 * 0.02562 * 17 12 11 19 19 C 1.41496 * 106.96607 * 0.02562 * 4 3 2 20 20 C 1.35034 * 124.88692 * 179.97438 * 2 1 3 21 21 C 1.50702 * 126.38690 * 0.02830 * 20 2 1 22 22 O 1.42905 * 109.46880 * 329.94642 * 21 20 2 23 23 Si 1.86294 * 109.47157 * 209.94869 * 21 20 2 24 24 H 1.48495 * 109.47260 * 59.99654 * 23 21 20 25 25 H 1.48504 * 109.47144 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47049 * 299.99635 * 23 21 20 27 27 H 1.08994 * 109.46809 * 90.03071 * 1 2 3 28 28 H 1.09002 * 109.46891 * 210.02241 * 1 2 3 29 29 H 1.08999 * 109.46998 * 330.02418 * 1 2 3 30 30 H 0.96998 * 119.99970 * 359.97438 * 7 5 4 31 31 H 1.08998 * 109.47004 * 299.99768 * 8 7 5 32 32 H 1.08997 * 109.47196 * 59.99608 * 8 7 5 33 33 H 1.07997 * 120.00364 * 359.97438 * 10 9 8 34 34 H 1.08001 * 120.00222 * 180.23112 * 11 10 9 35 35 H 1.09006 * 109.47323 * 59.99780 * 14 13 12 36 36 H 1.09001 * 109.47383 * 179.97438 * 14 13 12 37 37 H 1.09004 * 109.47176 * 300.00060 * 14 13 12 38 38 H 1.09001 * 109.47313 * 59.99524 * 15 13 12 39 39 H 1.08992 * 109.47136 * 180.02562 * 15 13 12 40 40 H 1.09006 * 109.46956 * 299.99982 * 15 13 12 41 41 H 1.08990 * 109.47026 * 60.00051 * 16 13 12 42 42 H 1.08993 * 109.46646 * 180.02562 * 16 13 12 43 43 H 1.09001 * 109.46652 * 300.00129 * 16 13 12 44 44 H 1.08000 * 119.99984 * 179.97438 * 17 12 11 45 45 H 1.07998 * 119.99539 * 179.97438 * 18 17 12 46 46 H 1.07998 * 127.24946 * 179.97438 * 19 4 3 47 47 H 1.08997 * 109.47022 * 89.94439 * 21 20 2 48 48 H 0.96705 * 113.99878 * 300.00146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4741 0.7169 0.0006 5 6 4.6272 1.6399 0.0002 6 8 5.7597 1.1978 0.0003 7 7 4.4240 2.9723 -0.0001 8 6 5.5678 3.8878 0.0001 9 6 5.0722 5.3109 -0.0010 10 6 4.8510 5.9648 -1.1986 11 6 4.3918 7.2687 -1.1997 12 6 4.1637 7.9220 -0.0030 13 14 3.5504 9.6866 -0.0044 14 6 5.0056 10.8497 -0.0041 15 6 2.5179 9.9840 -1.5263 16 6 2.5160 9.9857 1.5160 17 6 4.3898 7.2698 1.1947 18 6 4.8446 5.9645 1.1956 19 6 3.5273 -0.6970 0.0003 20 6 2.2374 -1.1077 0.0005 21 6 1.7535 -2.5349 0.0005 22 8 0.4959 -2.6115 0.6748 23 14 2.9951 -3.6115 0.8781 24 1 3.1547 -3.1428 2.2780 25 1 2.5186 -5.0180 0.8775 26 1 4.3020 -3.5319 0.1774 27 1 -0.3633 -0.0006 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 3.5205 3.3251 -0.0005 31 1 6.1722 3.7138 0.8903 32 1 6.1729 3.7134 -0.8896 33 1 5.0337 5.4560 -2.1335 34 1 4.2154 7.7784 -2.1354 35 1 5.6108 10.6747 -0.8937 36 1 4.6478 11.8793 -0.0054 37 1 5.6097 10.6757 0.8863 38 1 1.6665 9.3034 -1.5265 39 1 2.1605 11.0136 -1.5274 40 1 3.1232 9.8090 -2.4159 41 1 3.1200 9.8117 2.4063 42 1 2.1579 11.0151 1.5148 43 1 1.6646 9.3051 1.5157 44 1 4.2119 7.7804 2.1296 45 1 5.0216 5.4551 2.1313 46 1 4.4109 -1.3179 0.0003 47 1 1.6364 -2.8788 -1.0271 48 1 0.5253 -2.3201 1.5964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_10854838_13259642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:40 Heat of formation + Delta-G solvation = -4.723556 kcal Electronic energy + Delta-G solvation = -27106.703189 eV Core-core repulsion = 23286.795105 eV Total energy + Delta-G solvation = -3819.908084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.89403 -40.84422 -39.82977 -38.11923 -36.09405 -34.45164 -32.87713 -32.10707 -31.87317 -29.45038 -28.78382 -28.28833 -28.26684 -27.26982 -26.40599 -24.06322 -23.46435 -22.28088 -22.08580 -21.03128 -19.29637 -17.86461 -17.62158 -17.53859 -17.14209 -16.77290 -16.61325 -16.01645 -15.94854 -15.76558 -15.62652 -15.25919 -14.99351 -14.38459 -14.34408 -14.16200 -14.03626 -13.90691 -13.89870 -13.70494 -13.49268 -13.47493 -13.44231 -13.14035 -13.10764 -12.96277 -12.68734 -12.57350 -12.43288 -12.07064 -11.93498 -11.81476 -11.54483 -10.90563 -10.87208 -10.76954 -10.75231 -10.43627 -10.10131 -9.99750 -9.80345 -9.67039 0.17982 0.36962 0.52258 0.72971 1.11457 1.48217 1.49721 1.63032 1.84826 1.94846 2.00103 2.03558 2.21005 2.22487 2.67207 2.95897 3.11461 3.30515 3.35071 3.63124 3.89260 4.00220 4.14810 4.29576 4.32963 4.36463 4.44565 4.49763 4.53682 4.55788 4.60513 4.74095 4.78166 4.84875 4.85026 4.89050 4.90063 4.90358 4.91042 5.00182 5.14164 5.17268 5.21012 5.40173 5.58144 5.59667 5.61936 5.65126 5.68174 5.71564 6.12546 6.27475 6.44854 6.75681 7.00259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.258 5.258 3 N -0.264 5.264 4 C -0.040 4.040 5 C 0.603 3.397 6 O -0.569 6.569 7 N -0.702 5.702 8 C 0.163 3.837 9 C -0.108 4.108 10 C -0.123 4.123 11 C -0.100 4.100 12 C -0.373 4.373 13 Si 1.130 2.870 14 C -0.465 4.465 15 C -0.463 4.463 16 C -0.462 4.462 17 C -0.100 4.100 18 C -0.123 4.123 19 C -0.202 4.202 20 C -0.009 4.009 21 C -0.043 4.043 22 O -0.539 6.539 23 Si 1.001 2.999 24 H -0.263 1.263 25 H -0.254 1.254 26 H -0.262 1.262 27 H 0.093 0.907 28 H 0.139 0.861 29 H 0.102 0.898 30 H 0.414 0.586 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.139 0.861 45 H 0.125 0.875 46 H 0.165 0.835 47 H 0.146 0.854 48 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 1.424 0.759 6.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.047 5.047 3 N -0.102 5.102 4 C -0.198 4.198 5 C 0.388 3.612 6 O -0.446 6.446 7 N -0.353 5.353 8 C 0.040 3.960 9 C -0.109 4.109 10 C -0.142 4.142 11 C -0.118 4.118 12 C -0.412 4.412 13 Si 1.317 2.683 14 C -0.571 4.571 15 C -0.570 4.570 16 C -0.569 4.569 17 C -0.118 4.118 18 C -0.141 4.141 19 C -0.230 4.230 20 C -0.134 4.134 21 C -0.154 4.154 22 O -0.346 6.346 23 Si 0.823 3.177 24 H -0.187 1.187 25 H -0.178 1.178 26 H -0.186 1.186 27 H 0.112 0.888 28 H 0.157 0.843 29 H 0.121 0.879 30 H 0.250 0.750 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.157 0.843 45 H 0.143 0.857 46 H 0.182 0.818 47 H 0.163 0.837 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.046 1.240 0.615 6.202 hybrid contribution 0.402 -0.134 0.142 0.447 sum -5.644 1.106 0.757 5.801 Atomic orbital electron populations 1.22985 0.70275 1.08081 1.06279 1.45763 1.09135 1.01596 1.48195 1.73485 1.02553 1.14946 1.19205 1.21706 0.90950 0.94228 1.12872 1.17086 0.86490 0.81943 0.75663 1.90787 1.23929 1.77781 1.52139 1.45857 1.11101 1.04555 1.73829 1.20238 0.87782 0.84932 1.03018 1.19784 1.02098 0.94637 0.94348 1.21355 0.99434 0.95945 0.97422 1.21381 0.97057 0.94115 0.99242 1.28028 1.02504 1.16917 0.93800 0.77122 0.65135 0.60021 0.66065 1.26313 1.15092 1.11312 1.04365 1.26284 1.09745 1.05169 1.15772 1.26276 1.09754 1.05183 1.15724 1.21383 0.97059 0.94109 0.99224 1.21355 0.99409 0.95918 0.97427 1.21699 0.97585 0.93713 1.10011 1.22224 0.90542 0.92659 1.07998 1.24749 0.94216 0.91238 1.05201 1.86465 1.29220 1.88539 1.30363 0.84947 0.76157 0.77799 0.78822 1.18705 1.17766 1.18646 0.88811 0.84340 0.87915 0.75001 0.90714 0.90780 0.85719 0.84361 0.91472 0.90705 0.91448 0.91253 0.90694 0.90979 0.90943 0.90693 0.91243 0.84316 0.85654 0.81786 0.83653 0.75587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.42 11.00 127.77 1.41 0.99 16 2 N -0.26 -0.30 3.70 -355.92 -1.32 -1.62 16 3 N -0.26 -1.62 11.67 -48.18 -0.56 -2.19 16 4 C -0.04 -0.37 7.13 42.45 0.30 -0.07 16 5 C 0.60 7.06 7.83 86.75 0.68 7.74 16 6 O -0.57 -10.29 16.93 -3.95 -0.07 -10.36 16 7 N -0.70 -4.54 5.55 -469.84 -2.61 -7.15 16 8 C 0.16 0.84 5.80 85.63 0.50 1.34 16 9 C -0.11 -0.36 5.25 -19.87 -0.10 -0.46 16 10 C -0.12 -0.30 9.70 22.27 0.22 -0.08 16 11 C -0.10 -0.03 9.29 22.27 0.21 0.18 16 12 C -0.37 0.40 4.59 22.27 0.10 0.51 16 13 Si 1.13 -6.83 12.32 68.60 0.85 -5.99 16 14 C -0.46 1.64 8.65 113.37 0.98 2.62 16 15 C -0.46 2.12 8.53 113.37 0.97 3.09 16 16 C -0.46 2.17 8.53 113.37 0.97 3.13 16 17 C -0.10 -0.02 9.29 22.27 0.21 0.19 16 18 C -0.12 -0.28 9.70 22.27 0.22 -0.06 16 19 C -0.20 -1.32 9.35 22.41 0.21 -1.11 16 20 C -0.01 -0.01 6.18 41.40 0.26 0.25 16 21 C -0.04 0.21 2.99 71.24 0.21 0.43 16 22 O -0.54 4.02 10.02 -148.98 -1.49 2.53 16 23 Si 1.00 -2.96 26.63 68.60 1.83 -1.14 16 24 H -0.26 0.16 7.11 99.48 0.71 0.87 16 25 H -0.25 0.43 7.11 99.48 0.71 1.13 16 26 H -0.26 -0.05 6.87 99.48 0.68 0.63 16 27 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 28 H 0.14 -1.46 5.01 -2.39 -0.01 -1.48 16 29 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H 0.41 1.71 8.19 -92.71 -0.76 0.95 16 31 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 32 H 0.07 0.45 8.08 -2.39 -0.02 0.43 16 33 H 0.12 0.10 8.06 -2.91 -0.02 0.07 16 34 H 0.14 -0.52 7.43 -2.91 -0.02 -0.54 16 35 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 37 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 38 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 40 H 0.07 -0.35 7.69 -2.38 -0.02 -0.36 16 41 H 0.07 -0.36 7.68 -2.39 -0.02 -0.38 16 42 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 43 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 44 H 0.14 -0.54 7.43 -2.91 -0.02 -0.57 16 45 H 0.13 0.06 8.06 -2.91 -0.02 0.04 16 46 H 0.16 0.98 6.86 -2.91 -0.02 0.96 16 47 H 0.15 -1.12 7.96 -2.39 -0.02 -1.14 16 48 H 0.39 -5.18 8.39 -74.05 -0.62 -5.80 16 Total: 0.00 -19.99 402.66 4.28 -15.71 By element: Atomic # 1 Polarization: -8.80 SS G_CDS: 0.33 Total: -8.47 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.32 Total: 18.68 kcal Atomic # 7 Polarization: -6.47 SS G_CDS: -4.48 Total: -10.96 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -1.56 Total: -7.84 kcal Atomic # 14 Polarization: -9.80 SS G_CDS: 2.67 Total: -7.13 kcal Total: -19.99 4.28 -15.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_10854838_13259642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.986 kcal (2) G-P(sol) polarization free energy of solvation -19.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds