Wall clock time and date at job start Tue Mar 9 2021 12:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34803 * 125.90078 * 2 1 4 4 C 1.40992 * 107.48664 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.26172 * 180.02562 * 4 3 2 6 6 O 1.42893 * 109.47288 * 254.97570 * 5 4 3 7 7 Si 1.86302 * 109.46919 * 14.97237 * 5 4 3 8 8 C 1.34813 * 107.48590 * 359.73401 * 4 3 2 9 9 C 1.50694 * 125.90807 * 180.26027 * 8 4 3 10 10 N 1.36649 * 125.90487 * 179.97438 * 2 1 3 11 11 C 1.39673 * 125.68080 * 0.03997 * 10 2 1 12 12 C 1.40195 * 120.15340 * 270.02639 * 11 10 2 13 13 C 1.47585 * 120.19262 * 359.94672 * 12 11 10 14 14 O 1.21581 * 119.99999 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99825 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99842 * 180.02562 * 15 13 12 17 17 H 1.08998 * 112.90749 * 336.24562 * 16 15 13 18 18 C 1.54052 * 113.62392 * 107.50172 * 16 15 13 19 19 C 1.53781 * 86.98687 * 139.97788 * 18 16 15 20 20 H 1.09002 * 113.61445 * 89.16393 * 19 18 16 21 21 C 1.50697 * 113.61630 * 219.98189 * 19 18 16 22 22 N 1.34778 * 120.00103 * 279.13963 * 21 19 18 23 23 O 1.21284 * 120.00198 * 99.13328 * 21 19 18 24 24 C 1.53783 * 113.61458 * 205.00065 * 16 15 13 25 25 C 1.39659 * 119.61716 * 180.23260 * 12 11 10 26 26 C 1.37833 * 119.91246 * 359.48426 * 25 12 11 27 27 C 1.38534 * 120.31180 * 0.51254 * 26 25 12 28 28 C 1.38065 * 120.38953 * 359.74751 * 27 26 25 29 29 H 1.09001 * 109.47141 * 270.04225 * 1 2 3 30 30 H 1.09001 * 109.47349 * 30.04275 * 1 2 3 31 31 H 1.08997 * 109.46737 * 150.04068 * 1 2 3 32 32 H 1.08003 * 126.26195 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47672 * 134.97197 * 5 4 3 34 34 H 0.96700 * 114.00450 * 59.99212 * 6 5 4 35 35 H 1.48506 * 110.00055 * 58.68277 * 7 5 4 36 36 H 1.48503 * 110.00258 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46853 * 270.19932 * 9 8 4 38 38 H 1.09005 * 109.46838 * 30.19455 * 9 8 4 39 39 H 1.08996 * 109.47834 * 150.19516 * 9 8 4 40 40 H 0.97002 * 120.00250 * 359.97438 * 15 13 12 41 41 H 1.08999 * 113.60931 * 25.47166 * 18 16 15 42 42 H 1.08998 * 113.69722 * 254.49249 * 18 16 15 43 43 H 0.97002 * 119.99874 * 359.97438 * 22 21 19 44 44 H 0.96996 * 120.00075 * 179.97438 * 22 21 19 45 45 H 1.08992 * 113.61796 * 105.46496 * 24 16 15 46 46 H 1.09005 * 113.68996 * 334.57107 * 24 16 15 47 47 H 1.07996 * 120.04129 * 179.72394 * 25 12 11 48 48 H 1.07994 * 119.84254 * 180.26145 * 26 25 12 49 49 H 1.07999 * 119.80230 * 179.71892 * 27 26 25 50 50 H 1.07998 * 119.96299 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0920 0.0000 4 6 3.6352 0.6466 0.0006 5 6 4.8648 1.5179 0.0014 6 8 5.4560 1.5086 -1.2995 7 14 4.3900 3.2613 0.4552 8 6 3.6134 -0.7014 0.0069 9 6 4.8195 -1.6048 0.0153 10 7 2.3084 -1.1068 0.0005 11 6 1.8672 -2.4321 0.0003 12 6 1.6435 -3.1000 1.2124 13 6 1.8740 -2.4073 2.4951 14 8 2.2585 -1.2540 2.5026 15 7 1.6582 -3.0534 3.6581 16 6 1.8865 -2.3656 4.9313 17 1 2.5889 -1.5365 4.8457 18 6 0.5889 -2.0005 5.6770 19 6 1.3132 -2.4094 6.9705 20 1 1.8588 -1.5922 7.4424 21 6 0.4399 -3.1656 7.9382 22 7 -0.4090 -2.4973 8.7439 23 8 0.5009 -4.3757 7.9920 24 6 2.1965 -3.3175 6.0987 25 6 1.2071 -4.4266 1.1992 26 6 0.9891 -5.0665 -0.0020 27 6 1.2110 -4.4033 -1.1979 28 6 1.6476 -3.0935 -1.1996 29 1 -0.3633 0.0008 1.0277 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 1.9667 2.1201 -0.0004 33 1 5.5808 1.1354 0.7287 34 1 4.8740 1.8369 -1.9985 35 1 3.7451 3.2803 1.7928 36 1 5.5938 4.1310 0.4589 37 1 5.1159 -1.8246 -1.0103 38 1 5.6410 -1.1092 0.5327 39 1 4.5740 -2.5339 0.5297 40 1 1.3511 -3.9734 3.6521 41 1 -0.2544 -2.6442 5.4266 42 1 0.3412 -0.9400 5.6319 43 1 -0.4576 -1.5294 8.7011 44 1 -0.9714 -2.9840 9.3665 45 1 3.2458 -3.3194 6.3936 46 1 1.7927 -4.3210 5.9646 47 1 1.0369 -4.9491 2.1289 48 1 0.6475 -6.0909 -0.0109 49 1 1.0418 -4.9140 -2.1343 50 1 1.8180 -2.5830 -2.1359 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_11684966_12335856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:53 Heat of formation + Delta-G solvation = 5.493799 kcal Electronic energy + Delta-G solvation = -34537.932252 eV Core-core repulsion = 30112.464237 eV Total energy + Delta-G solvation = -4425.468016 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.85068 -41.65114 -40.71394 -39.49180 -38.38830 -37.64562 -34.94990 -34.57381 -34.06962 -33.56592 -32.23978 -30.41542 -30.10788 -27.58182 -27.05665 -26.81874 -25.05566 -24.58971 -23.56087 -22.44659 -21.68714 -20.99809 -20.65179 -20.18736 -18.84257 -18.64030 -17.91520 -17.81202 -17.44949 -17.16352 -16.68554 -16.41759 -16.18170 -16.16922 -15.90272 -15.77399 -15.37553 -15.15813 -15.00774 -14.81088 -14.70531 -14.34196 -14.28150 -14.16063 -13.97878 -13.72946 -13.59147 -13.43700 -13.33083 -13.22952 -13.06418 -12.90788 -12.75174 -12.48473 -12.43682 -12.25943 -12.13708 -11.78097 -11.73622 -11.08952 -10.94512 -10.71804 -10.32750 -10.30987 -10.12044 -10.00686 -9.50131 -8.65084 -4.95233 -0.43024 0.03660 1.22569 1.44927 1.51537 1.71915 1.72837 1.89923 1.96909 1.99495 2.05695 2.58970 2.61257 3.29521 3.35524 3.52495 3.61840 3.66956 3.71826 3.78165 3.79623 3.95552 4.07317 4.16695 4.17427 4.20282 4.23697 4.32198 4.43079 4.43896 4.52674 4.55739 4.58127 4.63978 4.67231 4.68961 4.71238 4.78265 4.81582 4.88937 4.93553 5.02231 5.03035 5.06735 5.18005 5.23984 5.27903 5.42853 5.47892 5.62673 5.82803 6.15292 6.29668 6.37513 6.40325 6.65003 6.89924 7.08590 7.27458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.031 3.969 3 C -0.201 4.201 4 C -0.208 4.208 5 C -0.036 4.036 6 O -0.559 6.559 7 Si 0.791 3.209 8 C 0.050 3.950 9 C -0.073 4.073 10 N -0.392 5.392 11 C 0.146 3.854 12 C -0.147 4.147 13 C 0.547 3.453 14 O -0.544 6.544 15 N -0.705 5.705 16 C 0.125 3.875 17 H 0.106 0.894 18 C -0.124 4.124 19 C -0.130 4.130 20 H 0.141 0.859 21 C 0.526 3.474 22 N -0.838 5.838 23 O -0.592 6.592 24 C -0.121 4.121 25 C -0.077 4.077 26 C -0.108 4.108 27 C -0.076 4.076 28 C -0.121 4.121 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.391 0.609 35 H -0.302 1.302 36 H -0.297 1.297 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.411 0.589 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.418 0.582 44 H 0.406 0.594 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.156 0.844 48 H 0.167 0.833 49 H 0.164 0.836 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -2.241 -1.482 6.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.224 4.224 4 C -0.214 4.214 5 C -0.147 4.147 6 O -0.367 6.367 7 Si 0.698 3.302 8 C -0.060 4.060 9 C -0.130 4.130 10 N -0.067 5.067 11 C 0.055 3.945 12 C -0.151 4.151 13 C 0.334 3.666 14 O -0.421 6.421 15 N -0.358 5.358 16 C 0.020 3.980 17 H 0.124 0.876 18 C -0.163 4.163 19 C -0.151 4.151 20 H 0.159 0.841 21 C 0.311 3.689 22 N -0.401 5.401 23 O -0.473 6.473 24 C -0.159 4.159 25 C -0.096 4.096 26 C -0.126 4.126 27 C -0.094 4.094 28 C -0.140 4.140 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.173 0.827 33 H 0.104 0.896 34 H 0.241 0.759 35 H -0.230 1.230 36 H -0.226 1.226 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.249 0.751 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.249 0.751 44 H 0.237 0.763 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.174 0.826 48 H 0.185 0.815 49 H 0.182 0.818 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.486 -2.051 -0.671 5.895 hybrid contribution -0.044 -0.707 0.910 1.153 sum -5.529 -2.758 0.239 6.184 Atomic orbital electron populations 1.20288 0.87156 1.03850 1.02149 1.20528 0.93926 0.84956 1.08308 1.20640 0.91670 0.98051 1.12047 1.19594 0.95067 0.92771 1.13995 1.24396 0.93287 1.08991 0.88018 1.86402 1.44184 1.89065 1.17040 0.93654 0.80046 0.74168 0.82315 1.20192 0.84165 0.94150 1.07507 1.20166 0.93393 0.96949 1.02492 1.41025 1.05260 1.02925 1.57444 1.17808 0.99676 0.83680 0.93289 1.20248 1.06388 0.96313 0.92160 1.18446 0.77465 0.86181 0.84484 1.90899 1.45806 1.17711 1.87724 1.45797 1.68218 1.17077 1.04677 1.22476 0.98030 0.96427 0.81068 0.87639 1.23377 0.97417 1.03213 0.92322 1.22579 0.97998 1.00485 0.94070 0.84082 1.20698 0.80169 0.87285 0.80749 1.43813 1.42536 1.12627 1.41131 1.90740 1.69636 1.16330 1.70545 1.23211 1.00932 0.98684 0.93105 1.21598 0.95714 0.91509 1.00804 1.21673 0.97860 1.01911 0.91131 1.21691 0.94491 0.92729 1.00523 1.21477 0.99856 0.96122 0.96555 0.92176 0.88309 0.91935 0.82697 0.89647 0.75932 1.22957 1.22557 0.90469 0.91043 0.93016 0.75132 0.89367 0.89186 0.75117 0.76326 0.89624 0.88833 0.82612 0.81501 0.81808 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 10.09 71.24 0.72 0.52 16 2 C 0.03 0.25 6.00 41.02 0.25 0.49 16 3 C -0.20 -1.58 9.27 22.16 0.21 -1.37 16 4 C -0.21 -2.00 5.35 -19.98 -0.11 -2.11 16 5 C -0.04 -0.28 2.60 71.24 0.19 -0.10 16 6 O -0.56 -3.67 12.88 -148.98 -1.92 -5.59 16 7 Si 0.79 4.00 30.81 68.60 2.11 6.11 16 8 C 0.05 0.52 5.98 41.02 0.25 0.76 16 9 C -0.07 -0.57 9.87 71.23 0.70 0.13 16 10 N -0.39 -3.22 1.45 -319.54 -0.46 -3.69 16 11 C 0.15 0.63 4.52 38.49 0.17 0.80 16 12 C -0.15 -0.36 5.89 -19.99 -0.12 -0.48 16 13 C 0.55 3.14 7.77 86.71 0.67 3.81 16 14 O -0.54 -7.27 13.28 -3.97 -0.05 -7.33 16 15 N -0.71 0.22 5.31 -442.72 -2.35 -2.13 16 16 C 0.13 -0.08 4.25 45.61 0.19 0.12 16 17 H 0.11 0.33 7.46 -2.39 -0.02 0.31 16 18 C -0.12 0.43 7.45 31.21 0.23 0.67 16 19 C -0.13 0.48 4.14 -11.01 -0.05 0.43 16 20 H 0.14 -1.11 8.14 -2.39 -0.02 -1.13 16 21 C 0.53 0.52 7.63 87.66 0.67 1.19 16 22 N -0.84 4.78 8.87 -173.53 -1.54 3.24 16 23 O -0.59 -6.31 16.75 -3.04 -0.05 -6.36 16 24 C -0.12 0.20 7.15 31.12 0.22 0.42 16 25 C -0.08 0.35 9.54 22.52 0.21 0.57 16 26 C -0.11 0.80 10.02 22.24 0.22 1.02 16 27 C -0.08 0.45 10.03 22.30 0.22 0.68 16 28 C -0.12 0.06 9.96 22.35 0.22 0.29 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.10 -0.15 8.14 -2.39 -0.02 -0.16 16 31 H 0.06 0.09 7.83 -2.39 -0.02 0.07 16 32 H 0.16 0.47 6.59 -2.91 -0.02 0.45 16 33 H 0.09 0.88 7.49 -2.39 -0.02 0.87 16 34 H 0.39 -0.53 8.70 -74.06 -0.64 -1.17 16 35 H -0.30 -3.61 7.11 99.48 0.71 -2.91 16 36 H -0.30 -3.15 7.11 99.48 0.71 -2.44 16 37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.61 7.49 -2.38 -0.02 0.59 16 39 H 0.05 0.41 7.83 -2.39 -0.02 0.39 16 40 H 0.41 -2.14 6.76 -92.71 -0.63 -2.77 16 41 H 0.09 -0.24 8.09 -2.39 -0.02 -0.26 16 42 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.42 -4.85 8.83 -92.71 -0.82 -5.67 16 44 H 0.41 -2.51 8.93 -92.71 -0.83 -3.34 16 45 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.09 0.03 7.43 -2.38 -0.02 0.01 16 47 H 0.16 -1.55 6.40 -2.91 -0.02 -1.57 16 48 H 0.17 -2.19 8.06 -2.91 -0.02 -2.21 16 49 H 0.16 -1.85 8.06 -2.91 -0.02 -1.87 16 50 H 0.14 -0.16 8.06 -2.91 -0.02 -0.19 16 Total: 0.00 -29.77 413.93 -1.04 -30.81 By element: Atomic # 1 Polarization: -21.06 SS G_CDS: -1.86 Total: -22.92 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.08 Total: 7.85 kcal Atomic # 7 Polarization: 1.78 SS G_CDS: -4.35 Total: -2.57 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -2.02 Total: -19.28 kcal Atomic # 14 Polarization: 4.00 SS G_CDS: 2.11 Total: 6.11 kcal Total: -29.77 -1.04 -30.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_11684966_12335856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.305 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds