Wall clock time and date at job start Tue Mar 9 2021 12:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39282 * 121.03274 * 2 1 4 4 C 1.46497 * 134.20003 * 359.97438 * 3 2 1 5 5 C 1.50708 * 126.59526 * 359.97438 * 4 3 2 6 6 O 1.42898 * 109.47300 * 284.99828 * 5 4 3 7 7 Si 1.86308 * 109.46783 * 165.00198 * 5 4 3 8 8 C 1.34179 * 106.80464 * 180.02562 * 4 3 2 9 9 N 1.36943 * 109.94790 * 359.97438 * 8 4 3 10 10 C 1.37154 * 110.11775 * 0.02562 * 9 8 4 11 11 N 1.32825 * 132.96506 * 179.97438 * 10 9 8 12 12 C 1.31305 * 121.88630 * 179.73669 * 11 10 9 13 13 C 1.39750 * 121.03049 * 180.02562 * 2 1 3 14 14 C 1.47670 * 120.45470 * 359.97438 * 13 2 1 15 15 O 1.21569 * 119.99722 * 354.25048 * 14 13 2 16 16 N 1.34774 * 119.99686 * 174.24814 * 14 13 2 17 17 C 1.46506 * 119.99540 * 180.02562 * 16 14 13 18 18 H 1.08999 * 112.90604 * 23.75047 * 17 16 14 19 19 C 1.53783 * 113.61334 * 155.00040 * 17 16 14 20 20 C 1.53773 * 87.17379 * 139.93684 * 19 17 16 21 21 H 1.09002 * 113.61589 * 89.15670 * 20 19 17 22 22 C 1.50697 * 113.61788 * 220.06129 * 20 19 17 23 23 N 1.34777 * 120.00474 * 179.97438 * 22 20 19 24 24 O 1.21285 * 119.99979 * 359.97438 * 22 20 19 25 25 C 1.53785 * 113.61323 * 252.49463 * 17 16 14 26 26 H 1.08999 * 109.47311 * 263.67917 * 1 2 3 27 27 H 1.08994 * 109.47021 * 23.68446 * 1 2 3 28 28 H 1.09006 * 109.46778 * 143.68041 * 1 2 3 29 29 H 1.08999 * 109.47350 * 45.00486 * 5 4 3 30 30 H 0.96698 * 114.00513 * 300.00738 * 6 5 4 31 31 H 1.48495 * 109.99702 * 179.97438 * 7 5 4 32 32 H 1.48495 * 109.99927 * 301.32266 * 7 5 4 33 33 H 1.08001 * 125.02144 * 179.97438 * 8 4 3 34 34 H 0.97006 * 124.93921 * 180.02562 * 9 8 4 35 35 H 1.07999 * 119.31106 * 180.27011 * 12 11 10 36 36 H 0.96995 * 120.00436 * 0.02562 * 16 14 13 37 37 H 1.08998 * 113.61290 * 254.53010 * 19 17 16 38 38 H 1.09005 * 113.61304 * 25.34827 * 19 17 16 39 39 H 0.97004 * 119.99587 * 0.02562 * 23 22 20 40 40 H 0.96994 * 120.00484 * 179.97438 * 23 22 20 41 41 H 1.08999 * 113.61311 * 334.56790 * 25 17 16 42 42 H 1.09002 * 113.60974 * 105.38781 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1935 0.0000 4 6 1.8517 2.6101 -0.0005 5 6 0.4526 3.1704 -0.0017 6 8 -0.1182 3.0237 -1.3035 7 14 0.5067 4.9764 0.4527 8 6 2.9948 3.3126 -0.0008 9 7 4.0669 2.4604 0.0000 10 6 3.6348 1.1587 0.0003 11 7 4.2721 -0.0066 0.0006 12 6 3.6267 -1.1501 0.0060 13 6 2.2274 -1.1975 -0.0005 14 6 1.5225 -2.4951 -0.0005 15 8 0.3119 -2.5291 0.1054 16 7 2.2212 -3.6415 -0.1180 17 6 1.5218 -4.9288 -0.1186 18 1 0.4802 -4.8455 -0.4288 19 6 2.2917 -6.0479 -0.8396 20 6 1.8281 -6.9877 0.2858 21 1 0.8703 -7.4684 0.0865 22 6 2.8888 -7.9583 0.7372 23 7 2.6201 -8.8418 1.7188 24 8 3.9844 -7.9443 0.2171 25 6 1.7165 -5.7363 1.1756 26 1 -0.3634 -0.1131 1.0214 27 1 -0.3633 0.9411 -0.4128 28 1 -0.3633 -0.8281 -0.6087 29 1 -0.1554 2.6311 0.7246 30 1 0.3722 3.4790 -2.0016 31 1 -0.8667 5.5410 0.4545 32 1 1.1275 5.1450 1.7911 33 1 3.0598 4.3906 -0.0015 34 1 4.9966 2.7373 0.0004 35 1 4.1869 -2.0734 0.0105 36 1 3.1871 -3.6144 -0.2022 37 1 1.8807 -6.3010 -1.8169 38 1 3.3703 -5.8918 -0.8615 39 1 1.7437 -8.8532 2.1345 40 1 3.3027 -9.4668 2.0091 41 1 2.6380 -5.4957 1.7058 42 1 0.8417 -5.7366 1.8258 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_11684966_12890568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:23 Heat of formation + Delta-G solvation = -11.880883 kcal Electronic energy + Delta-G solvation = -27853.768762 eV Core-core repulsion = 23801.422791 eV Total energy + Delta-G solvation = -4052.345971 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.85963 -41.60944 -40.62648 -38.95660 -38.34247 -37.68869 -35.19916 -34.72344 -34.41231 -31.92370 -31.05219 -28.95971 -27.30175 -26.72971 -26.34287 -24.71437 -24.00061 -22.34658 -21.73299 -20.72412 -20.46760 -19.34604 -18.72538 -18.51048 -17.86039 -17.62986 -17.42784 -16.89419 -16.70435 -16.41272 -16.27396 -16.04998 -15.59047 -15.52015 -15.25448 -15.22532 -14.63133 -14.44633 -14.16810 -14.02878 -13.78292 -13.66778 -13.51441 -13.39698 -13.21307 -13.13140 -12.39744 -12.28739 -12.19486 -12.02733 -11.68056 -11.18157 -11.14976 -10.94336 -10.66684 -10.55105 -10.20588 -10.12559 -9.63340 -9.11633 -4.97446 -0.36232 -0.09489 1.36414 1.43757 1.57563 1.65698 1.75646 1.77845 2.04070 2.06731 2.67799 2.73598 3.29137 3.39633 3.45470 3.48115 3.59300 3.64208 3.71887 3.74087 3.77252 3.89260 4.15218 4.23496 4.29376 4.31585 4.46317 4.56601 4.59340 4.66678 4.67876 4.73165 4.76244 4.89868 4.98159 5.00137 5.09660 5.20801 5.27316 5.38941 5.53210 5.73350 5.87928 6.22697 6.43748 6.46547 6.81835 6.89495 7.12974 7.33426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.061 3.939 3 C -0.168 4.168 4 C -0.206 4.206 5 C -0.049 4.049 6 O -0.557 6.557 7 Si 0.804 3.196 8 C 0.096 3.904 9 N -0.560 5.560 10 C 0.287 3.713 11 N -0.517 5.517 12 C 0.177 3.823 13 C -0.242 4.242 14 C 0.573 3.427 15 O -0.562 6.562 16 N -0.705 5.705 17 C 0.123 3.877 18 H 0.116 0.884 19 C -0.123 4.123 20 C -0.129 4.129 21 H 0.145 0.855 22 C 0.524 3.476 23 N -0.839 5.839 24 O -0.593 6.593 25 C -0.127 4.127 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.395 0.605 31 H -0.305 1.305 32 H -0.282 1.282 33 H 0.232 0.768 34 H 0.439 0.561 35 H 0.189 0.811 36 H 0.411 0.589 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.418 0.582 40 H 0.405 0.595 41 H 0.085 0.915 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 3.057 0.578 3.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.175 4.175 4 C -0.213 4.213 5 C -0.158 4.158 6 O -0.365 6.365 7 Si 0.709 3.291 8 C -0.030 4.030 9 N -0.167 5.167 10 C 0.053 3.947 11 N -0.230 5.230 12 C 0.009 3.991 13 C -0.249 4.249 14 C 0.361 3.639 15 O -0.442 6.442 16 N -0.357 5.357 17 C 0.019 3.981 18 H 0.134 0.866 19 C -0.162 4.162 20 C -0.151 4.151 21 H 0.163 0.837 22 C 0.310 3.690 23 N -0.402 5.402 24 O -0.474 6.474 25 C -0.167 4.167 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.245 0.755 31 H -0.233 1.233 32 H -0.208 1.208 33 H 0.248 0.752 34 H 0.280 0.720 35 H 0.206 0.794 36 H 0.249 0.751 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.249 0.751 40 H 0.236 0.764 41 H 0.104 0.896 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.509 3.590 1.099 4.047 hybrid contribution -0.183 -1.231 0.616 1.388 sum 1.327 2.359 1.715 3.205 Atomic orbital electron populations 1.21097 0.89400 1.04278 1.02946 1.20065 0.97059 0.90162 0.87411 1.19811 0.93301 0.94587 1.09794 1.20813 0.96410 0.90193 1.13885 1.24732 0.89845 1.12482 0.88729 1.86471 1.54550 1.78579 1.16937 0.94041 0.80612 0.72573 0.81908 1.22416 0.83628 0.97379 0.99606 1.41636 1.10743 1.01646 1.62683 1.18789 0.89537 0.86900 0.99474 1.66501 1.40940 0.96552 1.19054 1.22912 0.89812 0.95233 0.91164 1.20530 0.95368 0.93557 1.15494 1.17988 0.86489 0.83931 0.75462 1.90729 1.14816 1.87506 1.51197 1.45800 1.11106 1.04931 1.73829 1.22522 0.98185 0.80480 0.96957 0.86625 1.23232 1.01547 0.93045 0.98333 1.22619 0.99498 0.93931 0.99043 0.83697 1.20767 0.88354 0.81069 0.78857 1.43821 1.19843 1.37573 1.38932 1.90742 1.26573 1.72376 1.57696 1.23395 1.03758 0.92504 0.96994 0.90932 0.89772 0.89848 0.88756 0.75531 1.23305 1.20831 0.75174 0.71986 0.79407 0.75136 0.89281 0.89079 0.75086 0.76444 0.89636 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 8.46 71.24 0.60 -0.50 16 2 C 0.06 0.53 5.98 -19.25 -0.12 0.42 16 3 C -0.17 -1.06 6.16 -20.19 -0.12 -1.19 16 4 C -0.21 0.00 5.57 -18.63 -0.10 -0.11 16 5 C -0.05 0.04 1.88 71.24 0.13 0.17 16 6 O -0.56 -0.05 11.67 -148.98 -1.74 -1.79 16 7 Si 0.80 -4.36 30.77 68.60 2.11 -2.25 16 8 C 0.10 -0.61 10.44 82.97 0.87 0.25 16 9 N -0.56 1.77 6.04 -192.25 -1.16 0.61 16 10 C 0.29 1.41 8.42 134.02 1.13 2.54 16 11 N -0.52 -3.19 10.37 -191.75 -1.99 -5.18 16 12 C 0.18 0.63 10.67 85.20 0.91 1.54 16 13 C -0.24 -1.61 5.89 -19.99 -0.12 -1.72 16 14 C 0.57 3.81 7.72 86.74 0.67 4.48 16 15 O -0.56 -7.05 13.09 -3.93 -0.05 -7.10 16 16 N -0.71 -0.20 5.31 -443.06 -2.35 -2.55 16 17 C 0.12 -0.15 4.24 45.52 0.19 0.04 16 18 H 0.12 0.08 7.47 -2.39 -0.02 0.07 16 19 C -0.12 0.24 7.15 31.12 0.22 0.46 16 20 C -0.13 0.53 4.16 -10.96 -0.05 0.48 16 21 H 0.15 -1.31 8.14 -2.39 -0.02 -1.33 16 22 C 0.52 0.62 7.63 87.66 0.67 1.29 16 23 N -0.84 4.65 8.87 -173.53 -1.54 3.11 16 24 O -0.59 -6.64 16.74 -3.04 -0.05 -6.69 16 25 C -0.13 0.47 7.44 31.18 0.23 0.70 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.70 4.79 -2.39 -0.01 0.69 16 28 H 0.08 1.00 5.95 -2.38 -0.01 0.99 16 29 H 0.09 0.26 7.12 -2.39 -0.02 0.24 16 30 H 0.39 -3.41 8.70 -74.06 -0.64 -4.05 16 31 H -0.30 -1.02 7.11 99.48 0.71 -0.32 16 32 H -0.28 0.26 7.11 99.48 0.71 0.97 16 33 H 0.23 -3.82 6.36 -2.91 -0.02 -3.83 16 34 H 0.44 -3.83 8.96 -92.70 -0.83 -4.66 16 35 H 0.19 -0.69 6.43 -2.91 -0.02 -0.71 16 36 H 0.41 -1.65 6.80 -92.71 -0.63 -2.28 16 37 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.09 0.07 7.41 -2.38 -0.02 0.06 16 39 H 0.42 -4.89 8.83 -92.71 -0.82 -5.71 16 40 H 0.40 -2.35 8.93 -92.71 -0.83 -3.18 16 41 H 0.09 -0.19 8.09 -2.39 -0.02 -0.21 16 42 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 Total: 0.00 -32.17 347.27 -4.20 -36.37 By element: Atomic # 1 Polarization: -20.85 SS G_CDS: -2.55 Total: -23.40 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.12 Total: 8.86 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -7.04 Total: -4.01 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -1.84 Total: -15.58 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.11 Total: -2.25 kcal Total: -32.17 -4.20 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_11684966_12890568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.489 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds