Wall clock time and date at job start Tue Mar 9 2021 12:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34778 * 1 3 3 O 1.21287 * 119.99943 * 2 1 4 4 C 1.50696 * 119.99994 * 179.97438 * 2 1 3 5 5 H 1.09002 * 112.84580 * 48.80862 * 4 2 1 6 6 C 1.53781 * 113.61295 * 179.97438 * 4 2 1 7 7 C 1.53778 * 87.07865 * 140.07031 * 6 4 2 8 8 H 1.09003 * 113.61419 * 89.20191 * 7 6 4 9 9 N 1.46506 * 113.61261 * 220.01638 * 7 6 4 10 10 C 1.34773 * 119.99969 * 203.19151 * 9 7 6 11 11 O 1.21550 * 120.00098 * 0.02562 * 10 9 7 12 12 C 1.47846 * 120.00039 * 179.97438 * 10 9 7 13 13 C 1.39555 * 120.14735 * 179.72311 * 12 10 9 14 14 C 1.50702 * 120.07247 * 0.02912 * 13 12 10 15 15 O 1.42900 * 109.47368 * 179.97438 * 14 13 12 16 16 C 1.35894 * 116.99952 * 179.97438 * 15 14 13 17 17 C 1.38715 * 120.05428 * 180.02562 * 16 15 14 18 18 C 1.38167 * 119.94593 * 180.02562 * 17 16 15 19 19 C 1.50695 * 119.97218 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47361 * 64.99781 * 19 18 17 21 21 Si 1.86304 * 109.47150 * 184.99987 * 19 18 17 22 22 C 1.38247 * 120.05479 * 359.97438 * 18 17 16 23 23 C 1.38285 * 120.10722 * 359.97438 * 22 18 17 24 24 C 1.38125 * 120.06113 * 359.77046 * 23 22 18 25 25 C 1.37981 * 119.85395 * 179.74885 * 13 12 10 26 26 C 1.38340 * 120.14035 * 0.53428 * 25 13 12 27 27 C 1.38378 * 120.29818 * 359.74451 * 26 25 13 28 28 C 1.37936 * 120.14181 * 359.97396 * 27 26 25 29 29 C 1.53777 * 87.17319 * 334.60853 * 7 6 4 30 30 H 0.96996 * 119.99944 * 180.02562 * 1 2 3 31 31 H 0.97007 * 119.99676 * 0.02562 * 1 2 3 32 32 H 1.08990 * 113.61654 * 25.51972 * 6 4 2 33 33 H 1.09005 * 113.61352 * 254.61255 * 6 4 2 34 34 H 0.97005 * 119.99811 * 23.47204 * 9 7 6 35 35 H 1.09000 * 109.47009 * 299.99749 * 14 13 12 36 36 H 1.09006 * 109.46994 * 59.99667 * 14 13 12 37 37 H 1.08001 * 120.02570 * 359.97438 * 17 16 15 38 38 H 1.09006 * 109.47374 * 304.99739 * 19 18 17 39 39 H 0.96694 * 114.00118 * 60.00601 * 20 19 18 40 40 H 1.48503 * 109.99976 * 179.97438 * 21 19 18 41 41 H 1.48496 * 109.99734 * 301.31826 * 21 19 18 42 42 H 1.07998 * 119.94337 * 179.97438 * 22 18 17 43 43 H 1.08009 * 119.96848 * 180.02562 * 23 22 18 44 44 H 1.07998 * 120.02944 * 180.27412 * 24 23 22 45 45 H 1.07997 * 119.92739 * 180.27556 * 25 13 12 46 46 H 1.08002 * 119.84753 * 179.76540 * 26 25 13 47 47 H 1.07994 * 119.92745 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.07591 * 180.02562 * 28 27 26 49 49 H 1.09001 * 113.61614 * 139.94449 * 29 7 6 50 50 H 1.09001 * 113.61465 * 270.84481 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0504 0.0000 4 6 2.1013 -1.3051 0.0006 5 1 1.7399 -2.0027 -0.7550 6 6 3.6295 -1.1340 -0.0001 7 6 3.6830 -2.3124 0.9864 8 1 3.7554 -3.2856 0.5006 9 7 4.6669 -2.1368 2.0576 10 6 5.1649 -3.2129 2.6983 11 8 4.7981 -4.3291 2.3870 12 6 6.1582 -3.0357 3.7789 13 6 6.6716 -4.1474 4.4482 14 6 6.2152 -5.5332 4.0709 15 8 6.8802 -6.4942 4.8933 16 6 6.5788 -7.8021 4.6807 17 6 7.1871 -8.7881 5.4435 18 6 6.8793 -10.1173 5.2252 19 6 7.5394 -11.1889 6.0539 20 8 7.1343 -11.0537 7.4176 21 14 7.0328 -12.8654 5.4188 22 6 5.9655 -10.4648 4.2478 23 6 5.3569 -9.4837 3.4868 24 6 5.6572 -8.1532 3.7047 25 6 7.6022 -3.9754 5.4523 26 6 8.0183 -2.7036 5.8033 27 6 7.5089 -1.5966 5.1476 28 6 6.5824 -1.7551 4.1381 29 6 2.2504 -1.9342 1.3977 30 1 -0.4850 -0.8400 0.0004 31 1 -0.4850 0.8401 -0.0004 32 1 3.9634 -0.1895 0.4293 33 1 4.0926 -1.3494 -0.9631 34 1 4.9569 -1.2457 2.3085 35 1 5.1379 -5.6132 4.2167 36 1 6.4553 -5.7226 3.0246 37 1 7.9014 -8.5171 6.2069 38 1 8.6224 -11.0862 5.9848 39 1 6.1805 -11.1344 7.5544 40 1 7.6777 -13.9310 6.2275 41 1 5.5557 -13.0059 5.4782 42 1 5.7265 -11.5043 4.0784 43 1 4.6430 -9.7577 2.7240 44 1 5.1783 -7.3871 3.1130 45 1 8.0036 -4.8352 5.9680 46 1 8.7441 -2.5742 6.5925 47 1 7.8376 -0.6065 5.4268 48 1 6.1858 -0.8904 3.6268 49 1 1.6016 -2.7946 1.5617 50 1 2.2065 -1.2088 2.2101 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_11684966_4557126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:48 Heat of formation + Delta-G solvation = -59.417972 kcal Electronic energy + Delta-G solvation = -33984.749633 eV Core-core repulsion = 29330.522029 eV Total energy + Delta-G solvation = -4654.227604 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.161 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.91590 -41.38510 -40.87212 -39.63267 -38.98815 -38.36973 -37.37846 -34.92691 -34.51795 -33.31308 -32.50812 -32.09948 -31.01149 -28.08786 -27.23972 -26.76209 -26.58406 -24.86105 -23.68927 -23.30530 -22.21082 -21.82183 -21.53422 -20.54418 -19.17727 -18.89507 -18.59827 -17.99066 -17.85694 -17.41400 -17.19214 -17.16170 -16.93322 -16.48518 -16.40683 -16.22244 -16.04532 -15.95088 -15.62873 -15.44882 -15.28082 -14.89491 -14.78235 -14.57148 -14.23076 -14.12528 -14.09560 -13.70582 -13.55084 -13.41124 -13.29510 -13.01867 -12.81836 -12.55907 -12.41780 -12.24504 -12.20027 -12.15733 -11.99220 -11.70510 -11.59256 -11.01132 -10.86361 -10.67104 -10.65889 -10.27373 -9.99361 -9.96716 -9.82437 -9.27993 -4.90053 -0.27645 0.18632 0.25284 0.38090 1.29604 1.56436 1.62014 1.74549 1.91813 2.00436 2.05686 2.64482 2.66742 2.71948 3.36579 3.39592 3.41545 3.53288 3.58834 3.66072 3.71970 3.81065 3.84394 3.87277 4.03390 4.10077 4.19067 4.22988 4.24300 4.26358 4.34507 4.39265 4.46033 4.53303 4.54412 4.65036 4.66747 4.70722 4.73999 4.87135 4.91011 4.96275 4.96527 5.10468 5.17587 5.24360 5.33522 5.37262 5.42578 5.43394 5.48057 5.71375 5.81063 5.87054 6.33101 6.39548 6.45435 6.46561 7.04753 7.32533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.523 3.477 3 O -0.593 6.593 4 C -0.129 4.129 5 H 0.145 0.855 6 C -0.123 4.123 7 C 0.123 3.877 8 H 0.117 0.883 9 N -0.703 5.703 10 C 0.559 3.441 11 O -0.565 6.565 12 C -0.149 4.149 13 C -0.051 4.051 14 C 0.118 3.882 15 O -0.328 6.328 16 C 0.116 3.884 17 C -0.141 4.141 18 C -0.081 4.081 19 C -0.088 4.088 20 O -0.548 6.548 21 Si 0.778 3.222 22 C -0.157 4.157 23 C -0.074 4.074 24 C -0.209 4.209 25 C -0.123 4.123 26 C -0.090 4.090 27 C -0.125 4.125 28 C -0.079 4.079 29 C -0.127 4.127 30 H 0.418 0.582 31 H 0.405 0.595 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.386 0.614 40 H -0.301 1.301 41 H -0.279 1.279 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.151 0.849 47 H 0.159 0.841 48 H 0.156 0.844 49 H 0.093 0.907 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 1.214 -3.303 4.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.309 3.691 3 O -0.474 6.474 4 C -0.151 4.151 5 H 0.163 0.837 6 C -0.161 4.161 7 C 0.018 3.982 8 H 0.135 0.865 9 N -0.354 5.354 10 C 0.348 3.652 11 O -0.446 6.446 12 C -0.152 4.152 13 C -0.052 4.052 14 C 0.044 3.956 15 O -0.243 6.243 16 C 0.071 3.929 17 C -0.159 4.159 18 C -0.081 4.081 19 C -0.196 4.196 20 O -0.356 6.356 21 Si 0.683 3.317 22 C -0.175 4.175 23 C -0.092 4.092 24 C -0.228 4.228 25 C -0.141 4.141 26 C -0.108 4.108 27 C -0.142 4.142 28 C -0.098 4.098 29 C -0.167 4.167 30 H 0.249 0.751 31 H 0.236 0.764 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.250 0.750 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.235 0.765 40 H -0.230 1.230 41 H -0.205 1.205 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.169 0.831 47 H 0.177 0.823 48 H 0.173 0.827 49 H 0.112 0.888 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.541 0.432 -3.148 4.069 hybrid contribution -1.171 1.075 0.954 1.854 sum -3.712 1.507 -2.194 4.568 Atomic orbital electron populations 1.43827 1.06545 1.13765 1.76021 1.20777 0.83346 0.91037 0.73944 1.90743 1.69392 1.35292 1.51976 1.22625 0.96325 0.94934 1.01207 0.83690 1.23223 0.94005 0.98357 1.00521 1.22546 0.87302 1.00346 0.87979 0.86517 1.45824 1.43777 1.09299 1.36522 1.18430 0.80607 0.84624 0.81587 1.90725 1.61789 1.25128 1.66935 1.19686 1.01477 0.94376 0.99630 1.19720 0.96598 0.92768 0.96100 1.21519 0.96237 0.84180 0.93698 1.85933 1.65205 1.13519 1.59597 1.19163 0.95137 0.83256 0.95313 1.20323 1.03177 0.90986 1.01463 1.20154 0.97170 0.93829 0.96984 1.25375 1.03915 1.06793 0.83529 1.86573 1.29893 1.94362 1.24821 0.93835 0.78276 0.71506 0.88116 1.21206 0.98492 1.00462 0.97309 1.21232 0.98229 0.91250 0.98464 1.21556 1.01453 0.98832 1.00911 1.21129 0.97052 0.98862 0.97028 1.21758 0.98329 0.91779 0.98891 1.21552 0.96614 1.00473 0.95599 1.21572 0.96077 0.95404 0.96706 1.23387 0.97156 1.01131 0.94979 0.75080 0.76437 0.89111 0.89194 0.74982 0.90395 0.90221 0.85551 0.85818 0.76469 1.22977 1.20512 0.83434 0.82926 0.84768 0.84867 0.83130 0.82333 0.82685 0.88806 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 5.64 8.87 -173.53 -1.54 4.10 16 2 C 0.52 -0.08 7.64 87.66 0.67 0.59 16 3 O -0.59 -5.85 16.74 -3.05 -0.05 -5.90 16 4 C -0.13 0.73 4.14 -10.96 -0.05 0.69 16 5 H 0.15 -1.54 8.14 -2.39 -0.02 -1.56 16 6 C -0.12 0.46 7.15 31.12 0.22 0.69 16 7 C 0.12 -0.42 4.21 45.51 0.19 -0.23 16 8 H 0.12 -0.21 7.51 -2.39 -0.02 -0.23 16 9 N -0.70 1.55 5.31 -442.91 -2.35 -0.80 16 10 C 0.56 1.93 7.75 86.79 0.67 2.60 16 11 O -0.56 -4.87 13.03 -3.87 -0.05 -4.92 16 12 C -0.15 -0.40 5.87 -20.09 -0.12 -0.52 16 13 C -0.05 -0.28 5.91 -19.61 -0.12 -0.40 16 14 C 0.12 0.87 3.38 71.24 0.24 1.11 16 15 O -0.33 -2.93 8.62 -92.36 -0.80 -3.73 16 16 C 0.12 0.94 6.69 22.51 0.15 1.09 16 17 C -0.14 -0.97 9.62 22.37 0.22 -0.76 16 18 C -0.08 -0.27 5.35 -19.88 -0.11 -0.38 16 19 C -0.09 -0.14 2.80 71.23 0.20 0.06 16 20 O -0.55 -2.63 12.83 -148.98 -1.91 -4.55 16 21 Si 0.78 -0.93 29.88 68.60 2.05 1.12 16 22 C -0.16 -0.17 8.67 22.28 0.19 0.03 16 23 C -0.07 -0.13 10.04 22.25 0.22 0.09 16 24 C -0.21 -1.16 9.04 22.36 0.20 -0.96 16 25 C -0.12 -0.45 9.37 22.23 0.21 -0.24 16 26 C -0.09 0.09 10.04 22.33 0.22 0.32 16 27 C -0.12 0.43 10.03 22.23 0.22 0.65 16 28 C -0.08 0.21 9.54 22.53 0.21 0.42 16 29 C -0.13 0.69 7.44 31.18 0.23 0.92 16 30 H 0.42 -5.39 8.83 -92.71 -0.82 -6.20 16 31 H 0.40 -2.79 8.93 -92.70 -0.83 -3.61 16 32 H 0.09 -0.09 7.40 -2.39 -0.02 -0.11 16 33 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 34 H 0.41 -2.60 6.75 -92.70 -0.63 -3.23 16 35 H 0.08 0.67 6.86 -2.39 -0.02 0.66 16 36 H 0.08 0.68 6.87 -2.38 -0.02 0.66 16 37 H 0.13 0.91 8.06 -2.91 -0.02 0.89 16 38 H 0.12 0.02 7.96 -2.38 -0.02 0.01 16 39 H 0.39 -0.34 8.70 -74.06 -0.64 -0.99 16 40 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 41 H -0.28 -0.53 7.01 99.48 0.70 0.17 16 42 H 0.15 -0.51 4.83 -2.91 -0.01 -0.53 16 43 H 0.15 -0.51 8.06 -2.91 -0.02 -0.54 16 44 H 0.13 0.70 6.30 -2.91 -0.02 0.68 16 45 H 0.13 0.57 7.00 -2.91 -0.02 0.55 16 46 H 0.15 -0.82 8.06 -2.91 -0.02 -0.85 16 47 H 0.16 -1.40 8.06 -2.91 -0.02 -1.42 16 48 H 0.16 -1.36 6.41 -2.91 -0.02 -1.37 16 49 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 50 H 0.08 -0.31 8.10 -2.39 -0.02 -0.33 16 Total: 0.00 -25.95 413.20 -2.60 -28.55 By element: Atomic # 1 Polarization: -17.80 SS G_CDS: -1.84 Total: -19.64 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 3.90 Total: 5.77 kcal Atomic # 7 Polarization: 7.19 SS G_CDS: -3.89 Total: 3.30 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -2.81 Total: -19.10 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.05 Total: 1.12 kcal Total: -25.95 -2.60 -28.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_11684966_4557126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.873 kcal (2) G-P(sol) polarization free energy of solvation -25.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds