Wall clock time and date at job start Tue Mar 9 2021 12:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86298 * 109.47154 * 2 1 4 4 C 1.86303 * 109.46954 * 239.99941 * 2 1 3 5 5 C 1.90003 * 109.47226 * 119.99989 * 2 1 3 6 6 C 3.07397 * 109.47177 * 120.00193 * 2 1 3 7 7 C 4.54599 * 109.47152 * 120.00043 * 2 1 3 8 8 C 1.53002 * 109.47118 * 270.40526 * 7 6 5 9 9 N 1.46496 * 109.47264 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00155 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00130 * 0.02562 * 10 9 8 12 12 C 1.47581 * 119.99955 * 180.02562 * 10 9 8 13 13 C 1.36495 * 120.00506 * 180.02562 * 12 10 9 14 14 N 1.35950 * 120.49933 * 179.97438 * 13 12 10 15 15 C 1.37007 * 132.40926 * 179.97438 * 14 13 12 16 16 C 1.50696 * 126.42551 * 359.97438 * 15 14 13 17 17 O 1.42903 * 109.47389 * 329.71040 * 16 15 14 18 18 Si 1.86301 * 109.46719 * 209.71287 * 16 15 14 19 19 H 1.48506 * 109.47302 * 179.97438 * 18 16 15 20 20 H 1.48503 * 109.47334 * 60.00029 * 18 16 15 21 21 H 1.48500 * 109.47376 * 300.00026 * 18 16 15 22 22 C 1.35004 * 107.13784 * 179.73601 * 15 14 13 23 23 N 1.33577 * 108.66018 * 0.26001 * 22 15 14 24 24 C 1.32412 * 109.22246 * 0.02562 * 23 22 15 25 25 C 1.41261 * 132.11803 * 180.02562 * 24 23 22 26 26 Br 1.89093 * 120.25378 * 359.95475 * 25 24 23 27 27 C 1.35701 * 119.48700 * 179.26228 * 25 24 23 28 28 H 1.09005 * 109.46851 * 299.99877 * 1 2 3 29 29 H 1.09001 * 109.47086 * 59.99997 * 1 2 3 30 30 H 1.08997 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47355 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47126 * 299.99978 * 3 2 1 33 33 H 1.08995 * 109.47015 * 59.99789 * 3 2 1 34 34 H 1.08997 * 109.47104 * 299.99857 * 4 2 1 35 35 H 1.09001 * 109.47174 * 60.00115 * 4 2 1 36 36 H 1.08995 * 109.47043 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.46930 * 150.41142 * 7 6 5 38 38 H 1.08997 * 109.47739 * 30.41008 * 7 6 5 39 39 H 1.08997 * 109.46872 * 60.00202 * 8 7 6 40 40 H 1.08997 * 109.47209 * 300.00806 * 8 7 6 41 41 H 0.97002 * 119.99713 * 0.02562 * 9 8 7 42 42 H 1.07997 * 119.75153 * 359.97438 * 13 12 10 43 43 H 1.09001 * 109.47332 * 89.71677 * 16 15 14 44 44 H 0.96698 * 113.99836 * 180.02562 * 17 16 15 45 45 H 1.08002 * 125.66765 * 180.28396 * 22 15 14 46 46 H 1.08005 * 120.23561 * 180.21466 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4964 -0.8957 1.5514 6 6 2.8877 -1.4492 2.5098 7 6 3.3784 -2.1430 3.7118 8 6 2.8600 -1.4277 4.9610 9 7 3.3488 -2.1178 6.1572 10 6 3.0161 -1.6624 7.3812 11 8 2.3099 -0.6789 7.4927 12 6 3.5090 -2.3573 8.5862 13 6 3.1717 -1.8964 9.8260 14 7 3.6197 -2.5292 10.9427 15 6 3.4381 -2.2852 12.2786 16 6 2.6319 -1.1641 12.8820 17 8 2.6619 -0.0327 12.0096 18 14 3.3585 -0.6951 14.5322 19 1 2.5645 0.4101 15.1266 20 1 4.7631 -0.2505 14.3463 21 1 3.3274 -1.8708 15.4388 22 6 4.1125 -3.2408 12.9528 23 7 4.7012 -4.0521 12.0699 24 6 4.4207 -3.6388 10.8436 25 6 4.7860 -4.1314 9.5710 26 35 5.8820 -5.6650 9.4217 27 6 4.3327 -3.5038 8.4565 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2702 0.8899 34 1 2.1207 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4112 36 1 3.5739 -0.8779 -1.5214 37 1 4.4684 -2.1366 3.7155 38 1 3.0212 -3.1728 3.7082 39 1 1.7701 -1.4340 4.9573 40 1 3.2172 -0.3979 4.9645 41 1 3.9119 -2.9026 6.0682 42 1 2.5442 -1.0226 9.9204 43 1 1.6009 -1.4905 13.0185 44 1 2.1626 0.7286 12.3355 45 1 4.1667 -3.3341 14.0274 46 1 4.6017 -3.8721 7.4775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_11968232_12335884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:52 Heat of formation + Delta-G solvation = 28.881799 kcal Electronic energy + Delta-G solvation = -28005.524838 eV Core-core repulsion = 23874.567467 eV Total energy + Delta-G solvation = -4130.957371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 423.053 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.28035 -41.22773 -38.55259 -37.93703 -37.08831 -35.40984 -34.42695 -32.69283 -31.96175 -30.48944 -30.19492 -29.42477 -28.27846 -28.27069 -26.90150 -26.08137 -24.12706 -24.05875 -22.53246 -21.93885 -19.38578 -18.85696 -18.68487 -18.02820 -17.93594 -17.48511 -16.93441 -16.84778 -16.23913 -16.19919 -15.67781 -15.50748 -15.41626 -15.09751 -14.63556 -14.58776 -14.46440 -14.09977 -13.89744 -13.87159 -13.57515 -13.42164 -13.33032 -13.23901 -13.14390 -13.13715 -12.98397 -12.97922 -12.82021 -12.10279 -12.02942 -12.00670 -11.64041 -11.56220 -11.45320 -11.36699 -11.35530 -11.32420 -10.76066 -10.56220 -10.53289 -10.38193 -10.02720 -9.07134 -0.91520 -0.40121 0.17037 0.86491 1.12341 1.30463 1.42837 1.50696 1.50908 1.54276 1.72637 1.76898 1.94523 1.98296 2.19610 2.47743 2.47918 2.52704 2.75918 3.00272 3.16324 3.36184 3.40756 3.53633 3.85667 3.94245 4.05011 4.08087 4.11416 4.29779 4.31135 4.43039 4.48711 4.50429 4.83789 4.83850 4.85453 4.85539 4.87448 4.89858 4.89925 4.92787 4.95616 5.13984 5.22485 5.54647 5.58808 5.68087 5.69009 6.22467 6.42588 6.64169 6.74513 6.90281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.198 2.802 3 C -0.464 4.464 4 C -0.461 4.461 5 C -0.429 4.429 6 C -0.213 4.213 7 C -0.027 4.027 8 C 0.130 3.870 9 N -0.706 5.706 10 C 0.580 3.420 11 O -0.565 6.565 12 C -0.175 4.175 13 C 0.171 3.829 14 N -0.358 5.358 15 C -0.045 4.045 16 C -0.054 4.054 17 O -0.570 6.570 18 Si 1.004 2.996 19 H -0.239 1.239 20 H -0.282 1.282 21 H -0.239 1.239 22 C 0.025 3.975 23 N -0.492 5.492 24 C 0.223 3.777 25 C -0.082 4.082 26 Br 0.007 6.993 27 C -0.022 4.022 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.419 0.581 42 H 0.193 0.807 43 H 0.110 0.890 44 H 0.410 0.590 45 H 0.213 0.787 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 1.274 -2.749 3.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.380 2.620 3 C -0.572 4.572 4 C -0.568 4.568 5 C -0.461 4.461 6 C -0.213 4.213 7 C -0.064 4.064 8 C 0.006 3.994 9 N -0.359 5.359 10 C 0.367 3.633 11 O -0.445 6.445 12 C -0.182 4.182 13 C 0.045 3.955 14 N -0.031 5.031 15 C -0.156 4.156 16 C -0.163 4.163 17 O -0.381 6.381 18 Si 0.824 3.176 19 H -0.161 1.161 20 H -0.207 1.207 21 H -0.162 1.162 22 C -0.124 4.124 23 N -0.211 5.211 24 C -0.023 4.023 25 C -0.165 4.165 26 Br 0.092 6.908 27 C -0.048 4.048 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.258 0.742 42 H 0.210 0.790 43 H 0.128 0.872 44 H 0.263 0.737 45 H 0.229 0.771 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.103 0.502 -1.886 2.242 hybrid contribution -0.751 0.700 0.087 1.030 sum -1.854 1.202 -1.799 2.849 Atomic orbital electron populations 1.26258 1.21007 1.04778 1.05083 0.76165 0.64623 0.63269 0.57914 1.26260 1.06562 1.19252 1.05080 1.26212 1.06567 1.08484 1.15565 1.37077 1.01308 1.01794 1.05935 1.24109 1.00051 0.99727 0.97439 1.18973 1.02342 0.99041 0.86032 1.21224 0.99491 0.96351 0.82310 1.45616 1.53013 1.32882 1.04352 1.17519 0.79649 0.83032 0.83137 1.90843 1.39088 1.27537 1.87037 1.19205 1.06205 1.00123 0.92688 1.22240 0.93866 0.96001 0.83421 1.42694 1.33159 1.20711 1.06496 1.21483 1.09970 1.03783 0.80340 1.24611 1.03146 0.84598 1.03939 1.86346 1.77856 1.25236 1.48662 0.84967 0.78872 0.81574 0.72218 1.16145 1.20745 1.16183 1.22866 0.96357 0.91960 1.01235 1.70805 1.24880 1.28325 0.97080 1.20729 0.97459 0.89090 0.94979 1.20552 1.05479 0.99818 0.90616 1.96827 1.64105 1.31939 1.97892 1.21375 0.92429 0.91657 0.99345 0.91465 0.89597 0.91222 0.91243 0.89603 0.91468 0.91172 0.89614 0.91190 0.87142 0.87088 0.91578 0.91665 0.74236 0.78969 0.87206 0.73749 0.77089 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.88 8.65 113.37 0.98 2.86 16 2 Si 1.20 -6.63 14.26 68.60 0.98 -5.65 16 3 C -0.46 1.85 8.65 113.37 0.98 2.83 16 4 C -0.46 2.21 8.65 113.37 0.98 3.19 16 5 C -0.43 -0.88 12.14 74.32 0.90 0.03 16 6 C -0.21 -0.61 13.34 31.13 0.42 -0.20 16 7 C -0.03 0.10 5.82 28.79 0.17 0.27 16 8 C 0.13 -0.12 5.63 86.38 0.49 0.37 16 9 N -0.71 2.21 5.51 -466.23 -2.57 -0.36 16 10 C 0.58 1.83 7.76 86.71 0.67 2.50 16 11 O -0.57 -6.16 16.27 -4.01 -0.07 -6.23 16 12 C -0.17 -0.32 5.84 -20.35 -0.12 -0.44 16 13 C 0.17 0.78 9.91 83.65 0.83 1.61 16 14 N -0.36 -2.33 2.93 -337.71 -0.99 -3.32 16 15 C -0.04 -0.18 6.27 41.00 0.26 0.08 16 16 C -0.05 0.17 3.05 71.23 0.22 0.39 16 17 O -0.57 1.50 10.89 -148.98 -1.62 -0.13 16 18 Si 1.00 -4.44 26.60 68.60 1.83 -2.62 16 19 H -0.24 1.37 7.11 99.48 0.71 2.08 16 20 H -0.28 -0.53 7.11 99.48 0.71 0.18 16 21 H -0.24 1.22 6.84 99.48 0.68 1.90 16 22 C 0.02 0.13 10.44 83.68 0.87 1.00 16 23 N -0.49 -5.14 11.30 -194.10 -2.19 -7.34 16 24 C 0.22 1.92 7.59 134.19 1.02 2.94 16 25 C -0.08 -0.35 6.24 22.43 0.14 -0.21 16 26 Br 0.01 0.02 33.72 -20.37 -0.69 -0.66 16 27 C -0.02 0.03 9.26 22.55 0.21 0.23 16 28 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 29 H 0.09 -0.50 7.96 -2.39 -0.02 -0.52 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.23 7.96 -2.39 -0.02 -0.24 16 32 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 33 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 34 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 36 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 37 H 0.11 -0.80 8.14 -2.38 -0.02 -0.82 16 38 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.42 -4.21 6.51 -92.71 -0.60 -4.81 16 42 H 0.19 0.83 6.21 -2.91 -0.02 0.81 16 43 H 0.11 -0.88 7.96 -2.39 -0.02 -0.90 16 44 H 0.41 -4.89 8.74 -74.06 -0.65 -5.54 16 45 H 0.21 -0.26 6.72 -2.91 -0.02 -0.28 16 46 H 0.19 -1.75 6.44 -2.91 -0.02 -1.76 16 Total: 0.00 -25.92 418.61 4.21 -21.71 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: 0.52 Total: -12.87 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 9.01 Total: 17.45 kcal Atomic # 7 Polarization: -5.26 SS G_CDS: -5.75 Total: -11.01 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -1.69 Total: -6.36 kcal Atomic # 14 Polarization: -11.07 SS G_CDS: 2.80 Total: -8.27 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.66 kcal Total: -25.92 4.21 -21.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_11968232_12335884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.594 kcal (2) G-P(sol) polarization free energy of solvation -25.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds