Wall clock time and date at job start Tue Mar 9 2021 13:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.46928 * 2 1 4 4 C 1.50698 * 109.47311 * 239.99731 * 2 1 3 5 5 C 1.38635 * 119.93923 * 74.99906 * 4 2 1 6 6 F 1.35100 * 119.88184 * 359.72444 * 5 4 2 7 7 C 1.38672 * 120.23906 * 179.97438 * 5 4 2 8 8 C 1.37816 * 120.12044 * 0.02562 * 7 5 4 9 9 C 1.39664 * 119.87666 * 359.96925 * 8 7 5 10 10 C 1.47729 * 120.11825 * 180.02562 * 9 8 7 11 11 O 1.21566 * 120.00028 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99977 * 359.97438 * 10 9 8 13 13 C 1.46493 * 119.99936 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46887 * 180.02562 * 13 12 10 15 15 H 1.09001 * 112.85048 * 45.33999 * 14 13 12 16 16 C 1.53780 * 113.61494 * 176.52801 * 14 13 12 17 17 C 1.53781 * 87.08173 * 139.98345 * 16 14 13 18 18 H 1.08994 * 113.61632 * 89.11686 * 17 16 14 19 19 C 1.50703 * 113.61378 * 219.94020 * 17 16 14 20 20 C 1.38230 * 120.00249 * 59.72541 * 19 17 16 21 21 C 1.38237 * 120.00085 * 179.76475 * 20 19 17 22 22 C 1.38237 * 119.99860 * 0.48827 * 21 20 19 23 23 C 1.38238 * 119.99851 * 359.78615 * 22 21 20 24 24 C 1.38232 * 119.99756 * 239.99914 * 19 17 16 25 25 C 1.53776 * 113.61496 * 274.13731 * 14 13 12 26 26 C 1.37849 * 119.94263 * 254.97818 * 4 2 1 27 27 H 0.96699 * 114.00177 * 60.00712 * 1 2 3 28 28 H 1.09002 * 109.46873 * 119.99640 * 2 1 3 29 29 H 1.48495 * 109.99501 * 298.67853 * 3 2 1 30 30 H 1.48501 * 109.99954 * 59.99684 * 3 2 1 31 31 H 1.08001 * 119.93898 * 180.02562 * 7 5 4 32 32 H 1.08003 * 120.06217 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99764 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47524 * 299.99612 * 13 12 10 35 35 H 1.08996 * 109.47225 * 60.00675 * 13 12 10 36 36 H 1.08994 * 113.61788 * 254.53521 * 16 14 13 37 37 H 1.09004 * 113.61335 * 25.43441 * 16 14 13 38 38 H 1.08000 * 119.99943 * 359.97438 * 20 19 17 39 39 H 1.07999 * 120.00325 * 180.24470 * 21 20 19 40 40 H 1.07999 * 119.99778 * 179.76849 * 22 21 20 41 41 H 1.07996 * 119.99871 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00036 * 359.97438 * 24 19 17 43 43 H 1.08996 * 113.61675 * 334.56544 * 25 14 13 44 44 H 1.09001 * 113.61564 * 105.47499 * 25 14 13 45 45 H 1.08000 * 120.06230 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.8688 -0.0836 -2.4653 6 9 1.3523 1.1610 -2.5630 7 6 2.3298 -0.7313 -3.6015 8 6 2.8525 -2.0031 -3.5084 9 6 2.9179 -2.6393 -2.2668 10 6 3.4776 -4.0023 -2.1608 11 8 3.5340 -4.5538 -1.0789 12 7 3.9258 -4.6344 -3.2636 13 6 4.4814 -5.9858 -3.1584 14 6 4.9134 -6.4689 -4.5444 15 1 5.4699 -5.7148 -5.1010 16 6 5.5904 -7.8496 -4.5321 17 6 4.8127 -8.1551 -5.8232 18 1 5.3407 -7.8624 -6.7306 19 6 4.2763 -9.5621 -5.8862 20 6 3.3946 -10.0096 -4.9203 21 6 2.8988 -11.2986 -4.9808 22 6 3.2927 -12.1433 -6.0017 23 6 4.1789 -11.6976 -6.9645 24 6 4.6706 -10.4069 -6.9068 25 6 3.7772 -7.1176 -5.3525 26 6 2.4526 -1.9823 -1.1259 27 1 -0.3933 0.4416 -0.7651 28 1 1.7923 -0.5138 0.8900 29 1 1.5878 2.4585 -1.2243 30 1 1.5613 2.4680 1.2085 31 1 2.2792 -0.2383 -4.5610 32 1 3.2109 -2.5070 -4.3940 33 1 3.8805 -4.1944 -4.1269 34 1 5.3447 -5.9730 -2.4931 35 1 3.7241 -6.6598 -2.7581 36 1 6.6704 -7.8077 -4.6725 37 1 5.2963 -8.4726 -3.6874 38 1 3.0903 -9.3510 -4.1202 39 1 2.2068 -11.6469 -4.2284 40 1 2.9083 -13.1516 -6.0469 41 1 4.4870 -12.3577 -7.7618 42 1 5.3626 -10.0586 -7.6592 43 1 2.9865 -7.5401 -4.7325 44 1 3.3957 -6.4855 -6.1543 45 1 2.5016 -2.4695 -0.1633 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:24 Heat of formation + Delta-G solvation = -21.561508 kcal Electronic energy + Delta-G solvation = -28028.278668 eV Core-core repulsion = 23892.792723 eV Total energy + Delta-G solvation = -4135.485945 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.46938 -41.51474 -40.94976 -39.70213 -38.86841 -37.82099 -35.75018 -33.07804 -32.36670 -31.86050 -31.70423 -28.81363 -26.98713 -26.59410 -25.30137 -24.07985 -23.52421 -23.51137 -21.89163 -21.43742 -20.09571 -19.25597 -18.84653 -18.22272 -17.88651 -17.65563 -17.16579 -16.94753 -16.59729 -16.33759 -16.17769 -15.98099 -15.62950 -15.53006 -15.13374 -15.02127 -14.79839 -14.59002 -14.43746 -14.19654 -14.03106 -13.95602 -13.85380 -13.37632 -13.34094 -13.07390 -12.92406 -12.65672 -12.36425 -12.31364 -12.01342 -11.47466 -11.44435 -11.33524 -11.24998 -11.05402 -10.84306 -10.24943 -10.11718 -9.81715 -9.80926 -9.53162 -4.97618 -0.51464 0.02235 0.44677 0.50221 1.19079 1.56631 1.58941 1.93147 2.05296 2.56574 2.85213 2.97024 3.22863 3.44487 3.50858 3.59551 3.60694 3.62136 3.75927 3.97869 4.01083 4.07370 4.11324 4.12947 4.19118 4.28528 4.29866 4.36452 4.50384 4.62586 4.63763 4.65025 4.75667 4.77687 4.86218 4.90092 4.91713 4.96468 4.99976 5.09033 5.12146 5.13516 5.16559 5.23318 5.36694 5.52066 5.59853 5.60250 5.64829 5.79538 6.13684 6.30058 6.45317 7.12228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.084 4.084 3 Si 0.751 3.249 4 C -0.155 4.155 5 C 0.108 3.892 6 F -0.130 7.130 7 C -0.146 4.146 8 C -0.039 4.039 9 C -0.152 4.152 10 C 0.557 3.443 11 O -0.580 6.580 12 N -0.707 5.707 13 C 0.130 3.870 14 C -0.109 4.109 15 H 0.120 0.880 16 C -0.120 4.120 17 C -0.073 4.073 18 H 0.110 0.890 19 C -0.078 4.078 20 C -0.129 4.129 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.022 4.022 27 H 0.384 0.616 28 H 0.129 0.871 29 H -0.252 1.252 30 H -0.307 1.307 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.417 0.583 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 0.330 -7.374 8.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.192 4.192 3 Si 0.654 3.346 4 C -0.157 4.157 5 C 0.089 3.911 6 F -0.109 7.109 7 C -0.165 4.165 8 C -0.058 4.058 9 C -0.156 4.156 10 C 0.345 3.655 11 O -0.461 6.461 12 N -0.359 5.359 13 C 0.007 3.993 14 C -0.127 4.127 15 H 0.138 0.862 16 C -0.158 4.158 17 C -0.091 4.091 18 H 0.128 0.872 19 C -0.078 4.078 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.164 4.164 26 C -0.042 4.042 27 H 0.233 0.767 28 H 0.147 0.853 29 H -0.177 1.177 30 H -0.235 1.235 31 H 0.190 0.810 32 H 0.193 0.807 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.951 0.473 -6.103 7.286 hybrid contribution -1.456 -0.087 -0.417 1.517 sum 2.495 0.386 -6.520 6.992 Atomic orbital electron populations 1.86622 1.18176 1.80300 1.50059 1.25178 0.83573 1.12195 0.98292 0.94626 0.90262 0.72652 0.77038 1.20136 1.04622 0.96327 0.94584 1.18118 0.97675 0.80411 0.94910 1.91554 1.84472 1.38440 1.96433 1.21411 1.00569 0.95909 0.98577 1.21517 0.93995 0.93368 0.96882 1.19993 1.05418 0.94820 0.95339 1.18384 0.77399 0.85671 0.84049 1.90802 1.57800 1.68383 1.29110 1.45765 1.62341 1.17493 1.10297 1.21402 0.97999 0.82094 0.97853 1.22730 0.98304 0.97442 0.94254 0.86194 1.22993 1.00258 0.95522 0.97068 1.21575 0.97983 0.90197 0.99368 0.87177 1.19960 0.96811 0.96247 0.94773 1.21197 0.97987 0.96174 0.99280 1.21419 1.00329 0.94395 0.98926 1.21428 0.98515 1.00514 0.95312 1.21448 0.97519 0.96559 0.99315 1.21349 1.00543 0.94013 0.98831 1.23209 0.96114 0.97137 0.99913 1.21017 0.92232 0.91626 0.99277 0.76736 0.85289 1.17684 1.23537 0.81010 0.80733 0.74484 0.91950 0.92385 0.90146 0.90413 0.85480 0.85235 0.85126 0.84848 0.84733 0.90324 0.89776 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.76 12.88 -148.98 -1.92 -4.68 16 2 C -0.08 -0.13 2.80 71.24 0.20 0.07 16 3 Si 0.75 0.38 30.82 68.60 2.11 2.50 16 4 C -0.16 -0.08 4.78 -19.86 -0.09 -0.17 16 5 C 0.11 -0.14 6.62 22.47 0.15 0.01 16 6 F -0.13 -0.15 12.57 44.97 0.57 0.42 16 7 C -0.15 0.91 10.01 22.27 0.22 1.13 16 8 C -0.04 0.29 9.54 22.51 0.21 0.51 16 9 C -0.15 0.12 5.87 -20.09 -0.12 0.00 16 10 C 0.56 1.53 7.77 86.75 0.67 2.20 16 11 O -0.58 -7.08 16.34 -3.92 -0.06 -7.15 16 12 N -0.71 3.15 5.51 -466.09 -2.57 0.58 16 13 C 0.13 -0.43 5.50 86.38 0.47 0.04 16 14 C -0.11 0.88 3.75 -10.27 -0.04 0.84 16 15 H 0.12 -1.40 8.14 -2.39 -0.02 -1.42 16 16 C -0.12 0.66 7.11 31.12 0.22 0.88 16 17 C -0.07 0.36 3.97 -10.95 -0.04 0.32 16 18 H 0.11 -0.78 8.09 -2.39 -0.02 -0.80 16 19 C -0.08 0.00 5.29 -19.87 -0.11 -0.10 16 20 C -0.13 -0.15 8.60 22.27 0.19 0.04 16 21 C -0.13 -0.27 10.05 22.27 0.22 -0.05 16 22 C -0.14 -0.27 10.05 22.27 0.22 -0.04 16 23 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 24 C -0.13 -0.06 9.71 22.27 0.22 0.16 16 25 C -0.13 0.86 7.02 31.18 0.22 1.07 16 26 C -0.02 -0.04 9.21 22.51 0.21 0.17 16 27 H 0.38 -0.04 8.39 -74.06 -0.62 -0.66 16 28 H 0.13 -0.01 7.77 -2.39 -0.02 -0.03 16 29 H -0.25 -0.94 5.28 99.48 0.52 -0.41 16 30 H -0.31 -2.54 7.11 99.48 0.71 -1.84 16 31 H 0.17 -1.93 8.06 -2.91 -0.02 -1.95 16 32 H 0.18 -2.70 6.40 -2.91 -0.02 -2.72 16 33 H 0.42 -4.83 6.50 -92.71 -0.60 -5.43 16 34 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 0.00 7.88 -2.39 -0.02 -0.02 16 36 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.08 -0.24 7.67 -2.39 -0.02 -0.25 16 38 H 0.13 -0.12 6.69 -2.91 -0.02 -0.14 16 39 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 40 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 41 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 42 H 0.13 -0.43 8.05 -2.91 -0.02 -0.46 16 43 H 0.08 -0.34 6.12 -2.39 -0.01 -0.36 16 44 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 45 H 0.14 0.50 7.58 -2.91 -0.02 0.47 16 Total: 0.00 -20.17 374.14 1.05 -19.11 By element: Atomic # 1 Polarization: -17.60 SS G_CDS: -0.34 Total: -17.94 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 3.26 Total: 7.15 kcal Atomic # 7 Polarization: 3.15 SS G_CDS: -2.57 Total: 0.58 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.98 Total: -11.83 kcal Atomic # 9 Polarization: -0.15 SS G_CDS: 0.57 Total: 0.42 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: 2.11 Total: 2.50 kcal Total: -20.17 1.05 -19.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.449 kcal (2) G-P(sol) polarization free energy of solvation -20.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds