Wall clock time and date at job start Tue Mar 9 2021 13:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86304 * 109.46737 * 2 1 4 4 C 1.50702 * 109.47468 * 120.00045 * 2 1 3 5 5 C 1.34832 * 125.65062 * 65.30036 * 4 2 1 6 6 C 1.40795 * 107.04954 * 180.09766 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.62775 * 6 5 4 8 8 C 1.47569 * 125.94728 * 180.26566 * 7 6 5 9 9 C 1.39567 * 119.95503 * 180.02562 * 8 7 6 10 10 C 1.38323 * 119.80889 * 179.97438 * 9 8 7 11 11 O 1.35679 * 120.13271 * 179.97438 * 10 9 8 12 12 C 1.40366 * 119.72581 * 359.97438 * 10 9 8 13 13 C 1.47294 * 120.04272 * 179.97438 * 12 10 9 14 14 O 1.21620 * 120.00126 * 359.97438 * 13 12 10 15 15 N 1.34781 * 119.99920 * 180.02562 * 13 12 10 16 16 C 1.46500 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.46878 * 179.97438 * 16 15 13 18 18 H 1.08999 * 112.85486 * 43.80229 * 17 16 15 19 19 C 1.53782 * 113.61195 * 174.99772 * 17 16 15 20 20 C 1.53790 * 87.08208 * 139.98078 * 19 17 16 21 21 H 1.08995 * 113.61373 * 89.19955 * 20 19 17 22 22 C 1.50696 * 113.61283 * 220.01953 * 20 19 17 23 23 C 1.38235 * 120.00054 * 59.72527 * 22 20 19 24 24 C 1.38237 * 119.99925 * 179.73987 * 23 22 20 25 25 C 1.38242 * 120.00043 * 0.53370 * 24 23 22 26 26 C 1.38237 * 119.99663 * 359.74408 * 25 24 23 27 27 C 1.38232 * 119.99861 * 359.97438 * 26 25 24 28 28 C 1.53775 * 87.07726 * 334.56657 * 20 19 17 29 29 C 1.39916 * 119.91007 * 0.02562 * 12 10 9 30 30 C 1.36392 * 120.18334 * 359.72116 * 29 12 10 31 31 O 1.34226 * 125.65119 * 244.97145 * 4 2 1 32 32 H 0.96707 * 113.99962 * 299.99159 * 1 2 3 33 33 H 1.08999 * 109.47120 * 240.00577 * 2 1 3 34 34 H 1.48507 * 109.99725 * 178.68355 * 3 2 1 35 35 H 1.48499 * 110.00338 * 300.00044 * 3 2 1 36 36 H 1.07995 * 126.47651 * 359.95584 * 5 4 2 37 37 H 1.08002 * 126.63743 * 179.89704 * 6 5 4 38 38 H 1.07994 * 120.09120 * 0.02562 * 9 8 7 39 39 H 0.96698 * 114.00085 * 89.99906 * 11 10 9 40 40 H 0.97004 * 119.99569 * 359.97438 * 15 13 12 41 41 H 1.08997 * 109.46506 * 299.99779 * 16 15 13 42 42 H 1.09001 * 109.47101 * 59.99085 * 16 15 13 43 43 H 1.09004 * 113.61630 * 254.52682 * 19 17 16 44 44 H 1.09004 * 113.61529 * 25.43268 * 19 17 16 45 45 H 1.07999 * 120.00110 * 0.02562 * 23 22 20 46 46 H 1.08004 * 120.00242 * 180.29362 * 24 23 22 47 47 H 1.07991 * 119.99888 * 179.76682 * 25 24 23 48 48 H 1.07997 * 119.99690 * 179.97438 * 26 25 24 49 49 H 1.08006 * 119.99721 * 180.02562 * 27 26 25 50 50 H 1.09005 * 113.61828 * 270.88192 * 28 20 19 51 51 H 1.09004 * 113.61130 * 139.98203 * 28 20 19 52 52 H 1.07995 * 119.90676 * 179.97438 * 29 12 10 53 53 H 1.08005 * 119.85810 * 180.27319 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7617 -2.0192 1.5066 6 6 2.3816 -2.2631 2.7470 7 6 2.9089 -1.0787 3.1612 8 6 3.6592 -0.8547 4.4120 9 6 4.1459 0.4180 4.7143 10 6 4.8484 0.6246 5.8878 11 8 5.3250 1.8590 6.1880 12 6 5.0663 -0.4479 6.7667 13 6 5.8139 -0.2358 8.0179 14 8 6.2434 0.8690 8.2899 15 7 6.0230 -1.2664 8.8609 16 6 6.7662 -1.0554 10.1057 17 6 6.8602 -2.3754 10.8735 18 1 7.1059 -3.2217 10.2320 19 6 7.7278 -2.2906 12.1404 20 6 6.6765 -3.1803 12.8248 21 1 6.8717 -4.2474 12.7186 22 6 6.3788 -2.7784 14.2463 23 6 5.8907 -1.5143 14.5194 24 6 5.6126 -1.1475 15.8229 25 6 5.8329 -2.0410 16.8544 26 6 6.3264 -3.3032 16.5818 27 6 6.5990 -3.6719 15.2778 28 6 5.6640 -2.6329 11.8050 29 6 4.5732 -1.7189 6.4520 30 6 3.8765 -1.9174 5.2964 31 8 2.6272 -0.1464 2.2301 32 1 -0.3933 0.4416 0.7652 33 1 1.7923 -0.5137 -0.8900 34 1 3.5345 1.7704 0.0321 35 1 1.5613 2.4680 -1.2084 36 1 1.2457 -2.7431 0.8934 37 1 2.4329 -3.2083 3.2670 38 1 3.9738 1.2391 4.0344 39 1 4.7085 2.4064 6.6934 40 1 5.6808 -2.1477 8.6438 41 1 7.7691 -0.6973 9.8737 42 1 6.2487 -0.3159 10.7169 43 1 8.7020 -2.7680 12.0352 44 1 7.7903 -1.2867 12.5604 45 1 5.7224 -0.8147 13.7140 46 1 5.2268 -0.1614 16.0359 47 1 5.6191 -1.7532 17.8731 48 1 6.4989 -4.0012 17.3877 49 1 6.9842 -4.6582 15.0648 50 1 5.1623 -1.7225 12.1332 51 1 4.9722 -3.3866 11.4290 52 1 4.7412 -2.5442 7.1281 53 1 3.4944 -2.8998 5.0609 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:35 Heat of formation + Delta-G solvation = -6.865419 kcal Electronic energy + Delta-G solvation = -35865.877289 eV Core-core repulsion = 31022.902165 eV Total energy + Delta-G solvation = -4842.975124 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.166 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.74198 -41.62414 -41.04023 -39.73347 -38.83330 -38.08951 -37.82069 -35.62616 -34.25135 -33.50540 -32.18816 -31.75329 -31.30799 -30.57392 -28.77892 -26.90522 -26.58527 -24.94567 -24.15794 -23.98617 -23.52591 -22.42860 -21.98101 -21.80141 -21.31464 -20.14024 -19.71085 -18.80251 -18.51237 -17.83685 -17.71692 -17.45371 -17.24629 -16.75054 -16.58896 -16.26940 -16.24859 -16.06646 -15.84818 -15.74569 -15.62448 -15.22346 -14.84447 -14.61969 -14.42975 -14.38248 -14.27216 -14.15503 -13.98820 -13.93216 -13.87076 -13.58393 -13.49167 -13.35952 -13.03283 -12.82564 -12.70875 -12.64118 -12.32050 -12.26911 -12.01574 -11.89110 -11.46353 -11.34580 -11.23133 -11.12875 -10.83939 -10.73298 -10.58469 -10.12077 -9.94135 -9.81371 -9.53001 -9.01011 -5.06215 -0.78460 0.15698 0.44902 0.50574 0.64829 1.12919 1.39861 1.46034 1.74533 1.86685 1.93733 2.08339 2.65699 2.85452 3.02582 3.29327 3.41851 3.54570 3.59861 3.61523 3.67162 3.77603 3.87826 3.99021 4.00537 4.02273 4.07049 4.12978 4.19481 4.23281 4.28503 4.31426 4.32701 4.41122 4.49810 4.63267 4.63727 4.65594 4.70845 4.74919 4.79863 4.85270 4.89197 4.91544 4.96371 5.07620 5.09662 5.12111 5.13381 5.16497 5.22472 5.23461 5.38802 5.42801 5.51938 5.54801 5.60383 5.65088 5.79493 5.96869 6.13936 6.49242 6.59869 6.71624 7.18217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.023 4.023 3 Si 0.768 3.232 4 C -0.053 4.053 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.005 3.995 8 C 0.025 3.975 9 C -0.152 4.152 10 C 0.160 3.840 11 O -0.496 6.496 12 C -0.179 4.179 13 C 0.553 3.447 14 O -0.567 6.567 15 N -0.710 5.710 16 C 0.132 3.868 17 C -0.110 4.110 18 H 0.118 0.882 19 C -0.121 4.121 20 C -0.073 4.073 21 H 0.110 0.890 22 C -0.078 4.078 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.140 4.140 26 C -0.130 4.130 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.051 4.051 30 C -0.110 4.110 31 O -0.174 6.174 32 H 0.399 0.601 33 H 0.138 0.862 34 H -0.298 1.298 35 H -0.277 1.277 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.140 0.860 39 H 0.409 0.591 40 H 0.415 0.585 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.172 0.828 53 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -6.415 2.358 7.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.134 4.134 3 Si 0.673 3.327 4 C -0.104 4.104 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.024 3.976 9 C -0.171 4.171 10 C 0.113 3.887 11 O -0.309 6.309 12 C -0.183 4.183 13 C 0.341 3.659 14 O -0.447 6.447 15 N -0.363 5.363 16 C 0.009 3.991 17 C -0.128 4.128 18 H 0.136 0.864 19 C -0.159 4.159 20 C -0.091 4.091 21 H 0.128 0.872 22 C -0.078 4.078 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.148 4.148 27 C -0.148 4.148 28 C -0.161 4.161 29 C -0.069 4.069 30 C -0.128 4.128 31 O -0.072 6.072 32 H 0.250 0.750 33 H 0.155 0.845 34 H -0.225 1.225 35 H -0.203 1.203 36 H 0.183 0.817 37 H 0.199 0.801 38 H 0.158 0.842 39 H 0.269 0.731 40 H 0.253 0.747 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.152 0.848 49 H 0.152 0.848 50 H 0.098 0.902 51 H 0.103 0.897 52 H 0.190 0.810 53 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.508 -5.216 1.340 5.941 hybrid contribution -0.249 -0.390 0.080 0.470 sum -2.757 -5.607 1.420 6.407 Atomic orbital electron populations 1.86533 1.15838 1.82087 1.50340 1.24396 0.85442 1.10822 0.92749 0.93381 0.78047 0.75879 0.85345 1.23225 1.00551 0.94318 0.92269 1.21833 1.04226 0.95732 0.98476 1.22239 1.00899 0.98956 0.97020 1.20587 1.04525 0.87962 0.91319 1.17950 0.95495 0.93941 0.90217 1.21583 0.99425 0.98156 0.97923 1.18505 0.92241 0.85767 0.92170 1.84731 1.45772 1.23626 1.76767 1.20540 1.05503 0.96151 0.96081 1.18268 0.79557 0.84435 0.83664 1.90823 1.51930 1.25608 1.76325 1.45784 1.56917 1.12344 1.21259 1.21361 0.95813 0.97829 0.84135 1.22730 0.97873 0.96869 0.95359 0.86409 1.23009 0.97922 1.00216 0.94782 1.21540 0.97657 1.00609 0.89284 0.87192 1.19951 0.98312 0.93875 0.95657 1.21199 0.99948 0.96540 0.96916 1.21422 1.00121 1.00279 0.93182 1.21432 1.00003 0.94360 0.99952 1.21445 0.99116 0.96898 0.97374 1.21348 1.00551 1.00237 0.92653 1.23173 0.96033 1.01719 0.95223 1.21167 0.93761 0.95146 0.96874 1.21055 0.99337 0.99331 0.93032 1.83923 1.57873 1.38525 1.26894 0.74980 0.84480 1.22534 1.20285 0.81692 0.80062 0.84237 0.73109 0.74669 0.92567 0.92245 0.90311 0.90382 0.85453 0.85157 0.85078 0.84846 0.84789 0.90158 0.89740 0.81032 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.05 12.88 -148.98 -1.92 -0.87 16 2 C -0.02 0.03 2.98 71.24 0.21 0.25 16 3 Si 0.77 -0.58 32.11 68.60 2.20 1.62 16 4 C -0.05 -0.04 6.21 24.90 0.15 0.11 16 5 C -0.18 0.05 10.78 22.11 0.24 0.29 16 6 C -0.17 0.31 10.26 22.40 0.23 0.54 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.02 0.00 5.87 -20.08 -0.12 -0.12 16 9 C -0.15 -0.43 9.65 22.61 0.22 -0.22 16 10 C 0.16 0.79 6.71 22.81 0.15 0.94 16 11 O -0.50 -3.77 11.56 -68.97 -0.80 -4.57 16 12 C -0.18 -0.35 5.89 -19.97 -0.12 -0.47 16 13 C 0.55 2.89 7.75 86.62 0.67 3.56 16 14 O -0.57 -8.07 15.14 16.90 0.26 -7.82 16 15 N -0.71 1.71 5.50 -466.51 -2.57 -0.86 16 16 C 0.13 -0.21 5.51 86.38 0.48 0.26 16 17 C -0.11 0.75 3.75 -10.27 -0.04 0.71 16 18 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 19 C -0.12 0.53 7.11 31.12 0.22 0.75 16 20 C -0.07 0.32 3.98 -11.01 -0.04 0.27 16 21 H 0.11 -0.70 8.09 -2.39 -0.02 -0.72 16 22 C -0.08 -0.02 5.29 -19.87 -0.11 -0.13 16 23 C -0.13 -0.17 8.60 22.27 0.19 0.02 16 24 C -0.13 -0.26 10.05 22.27 0.22 -0.04 16 25 C -0.14 -0.27 10.05 22.27 0.22 -0.04 16 26 C -0.13 -0.18 10.05 22.27 0.22 0.04 16 27 C -0.13 -0.10 9.71 22.27 0.22 0.12 16 28 C -0.12 0.76 7.01 31.12 0.22 0.98 16 29 C -0.05 0.29 9.47 22.25 0.21 0.50 16 30 C -0.11 0.59 9.48 22.26 0.21 0.81 16 31 O -0.17 -0.49 8.79 -6.02 -0.05 -0.55 16 32 H 0.40 -3.80 8.70 -74.05 -0.64 -4.45 16 33 H 0.14 -0.33 7.96 -2.39 -0.02 -0.35 16 34 H -0.30 -2.04 7.11 99.48 0.71 -1.34 16 35 H -0.28 -1.19 7.11 99.48 0.71 -0.48 16 36 H 0.17 -0.48 8.06 -2.91 -0.02 -0.50 16 37 H 0.18 -1.45 7.24 -2.91 -0.02 -1.47 16 38 H 0.14 0.35 7.89 -2.91 -0.02 0.33 16 39 H 0.41 0.09 9.06 -74.06 -0.67 -0.58 16 40 H 0.41 -3.95 6.48 -92.71 -0.60 -4.55 16 41 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.06 0.06 7.84 -2.39 -0.02 0.04 16 43 H 0.08 -0.39 8.14 -2.38 -0.02 -0.41 16 44 H 0.08 -0.16 7.67 -2.38 -0.02 -0.18 16 45 H 0.13 -0.11 6.67 -2.91 -0.02 -0.13 16 46 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 47 H 0.13 -0.16 8.06 -2.92 -0.02 -0.19 16 48 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 49 H 0.13 -0.38 8.06 -2.91 -0.02 -0.41 16 50 H 0.08 -0.32 6.08 -2.38 -0.01 -0.34 16 51 H 0.08 -0.69 8.14 -2.38 -0.02 -0.71 16 52 H 0.17 -2.33 6.38 -2.91 -0.02 -2.35 16 53 H 0.17 -1.98 6.95 -2.91 -0.02 -2.00 16 Total: 0.00 -26.31 443.24 0.27 -26.04 By element: Atomic # 1 Polarization: -21.42 SS G_CDS: -0.89 Total: -22.31 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 4.04 Total: 9.31 kcal Atomic # 7 Polarization: 1.71 SS G_CDS: -2.57 Total: -0.86 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -2.51 Total: -13.80 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: 2.20 Total: 1.62 kcal Total: -26.31 0.27 -26.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.174 kcal (2) G-P(sol) polarization free energy of solvation -26.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds