Wall clock time and date at job start Tue Mar 9 2021 13:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47005 * 2 1 4 4 C 1.50706 * 109.47186 * 119.99534 * 2 1 3 5 5 C 1.38327 * 119.87506 * 244.72740 * 4 2 1 6 6 C 1.37999 * 120.13040 * 179.72294 * 5 4 2 7 7 C 1.39405 * 119.86555 * 0.57139 * 6 5 4 8 8 C 1.48276 * 120.12540 * 179.72228 * 7 6 5 9 9 C 1.39501 * 119.97896 * 179.70412 * 8 7 6 10 10 C 1.37661 * 120.02802 * 179.76854 * 9 8 7 11 11 C 1.39706 * 119.97350 * 0.53289 * 10 9 8 12 12 C 1.47726 * 120.02324 * 179.74522 * 11 10 9 13 13 O 1.21574 * 119.99499 * 179.97438 * 12 11 10 14 14 N 1.34776 * 120.00132 * 359.97438 * 12 11 10 15 15 C 1.46496 * 119.99873 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47031 * 179.97438 * 15 14 12 17 17 H 1.09001 * 112.85027 * 316.20099 * 16 15 14 18 18 C 1.53779 * 113.61515 * 87.50608 * 16 15 14 19 19 C 1.53772 * 87.08486 * 139.97961 * 18 16 15 20 20 H 1.09001 * 113.61625 * 89.11263 * 19 18 16 21 21 C 1.50699 * 113.69677 * 220.00589 * 19 18 16 22 22 C 1.38243 * 119.99474 * 37.26009 * 21 19 18 23 23 C 1.38234 * 119.99835 * 179.80921 * 22 21 19 24 24 C 1.38238 * 119.99776 * 0.42534 * 23 22 21 25 25 C 1.38227 * 120.00168 * 359.80694 * 24 23 22 26 26 C 1.38229 * 120.00504 * 217.54076 * 21 19 18 27 27 C 1.53781 * 113.61496 * 185.00320 * 16 15 14 28 28 C 1.39708 * 119.95345 * 359.71864 * 11 10 9 29 29 C 1.37667 * 119.97059 * 0.02562 * 28 11 10 30 30 C 1.39400 * 119.74715 * 359.70601 * 7 6 5 31 31 C 1.37998 * 119.87372 * 359.97438 * 30 7 6 32 32 H 0.96698 * 113.99763 * 300.00212 * 1 2 3 33 33 H 1.08992 * 109.47403 * 239.99786 * 2 1 3 34 34 H 1.48503 * 109.99841 * 178.68058 * 3 2 1 35 35 H 1.48504 * 109.99775 * 299.99979 * 3 2 1 36 36 H 1.08008 * 119.93508 * 359.97438 * 5 4 2 37 37 H 1.07997 * 120.07080 * 180.25561 * 6 5 4 38 38 H 1.07999 * 119.98648 * 0.02562 * 9 8 7 39 39 H 1.08000 * 120.01503 * 180.23317 * 10 9 8 40 40 H 0.96999 * 120.00027 * 0.02562 * 14 12 11 41 41 H 1.08997 * 109.47533 * 300.00128 * 15 14 12 42 42 H 1.08995 * 109.47007 * 60.00423 * 15 14 12 43 43 H 1.08998 * 113.61557 * 254.53366 * 18 16 15 44 44 H 1.09001 * 113.61633 * 25.43050 * 18 16 15 45 45 H 1.07994 * 119.99985 * 0.02562 * 22 21 19 46 46 H 1.07998 * 120.00379 * 180.20852 * 23 22 21 47 47 H 1.08002 * 119.99578 * 179.78861 * 24 23 22 48 48 H 1.08002 * 120.00357 * 179.97438 * 25 24 23 49 49 H 1.08005 * 119.99901 * 359.97371 * 26 21 19 50 50 H 1.09001 * 113.61351 * 334.56208 * 27 16 15 51 51 H 1.08999 * 113.61719 * 105.47094 * 27 16 15 52 52 H 1.07996 * 120.01378 * 180.02562 * 28 11 10 53 53 H 1.07996 * 119.98222 * 179.97438 * 29 28 11 54 54 H 1.08002 * 120.06276 * 179.97438 * 30 7 6 55 55 H 1.07994 * 119.93569 * 180.02562 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2306 5 6 2.6439 -0.0104 2.1876 6 6 3.1014 -0.6543 3.3191 7 6 2.8546 -2.0155 3.4909 8 6 3.3489 -2.7145 4.7016 9 6 3.0948 -4.0753 4.8734 10 6 3.5574 -4.7263 5.9947 11 6 4.2719 -4.0211 6.9663 12 6 4.7639 -4.7174 8.1727 13 8 5.3860 -4.1033 9.0176 14 7 4.5231 -6.0333 8.3366 15 6 5.0115 -6.7238 9.5328 16 6 4.6057 -8.1978 9.4721 17 1 3.5753 -8.3401 9.1464 18 6 5.6172 -9.0851 8.7276 19 6 5.3652 -10.1463 9.8114 20 1 4.5428 -10.8225 9.5777 21 6 6.6114 -10.8708 10.2510 22 6 7.8081 -10.1866 10.3553 23 6 8.9504 -10.8502 10.7623 24 6 8.8979 -12.1999 11.0567 25 6 7.7023 -12.8850 10.9478 26 6 6.5591 -12.2206 10.5445 27 6 4.9654 -8.9884 10.7411 28 6 4.5213 -2.6571 6.7958 29 6 4.0623 -2.0093 5.6711 30 6 2.1410 -2.7170 2.5204 31 6 1.6827 -2.0611 1.3961 32 1 -0.3933 0.4417 0.7650 33 1 1.7924 -0.5138 -0.8899 34 1 3.5346 1.7703 0.0321 35 1 1.5614 2.4679 -1.2085 36 1 2.8389 1.0431 2.0509 37 1 3.6540 -0.1059 4.0677 38 1 2.5386 -4.6194 4.1244 39 1 3.3638 -5.7807 6.1257 40 1 4.0270 -6.5233 7.6623 41 1 6.0978 -6.6472 9.5785 42 1 4.5772 -6.2641 10.4205 43 1 5.2847 -9.3876 7.7346 44 1 6.6325 -8.6885 8.7324 45 1 7.8498 -9.1330 10.1221 46 1 9.8846 -10.3151 10.8470 47 1 9.7911 -12.7190 11.3714 48 1 7.6613 -13.9395 11.1774 49 1 5.6250 -12.7560 10.4591 50 1 5.8025 -8.5655 11.2965 51 1 4.1066 -9.2130 11.3738 52 1 5.0739 -2.1111 7.5460 53 1 4.2546 -0.9548 5.5394 54 1 1.9473 -3.7718 2.6481 55 1 1.1294 -2.6034 0.6438 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_13158362.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:42 Heat of formation + Delta-G solvation = 40.473512 kcal Electronic energy + Delta-G solvation = -34124.217369 eV Core-core repulsion = 29636.895640 eV Total energy + Delta-G solvation = -4487.321729 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.183 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.54202 -41.08036 -40.58230 -39.32010 -38.83937 -37.50346 -35.76190 -34.03930 -32.65200 -32.25004 -31.77595 -31.57239 -30.93775 -28.79245 -26.87342 -26.60931 -24.97579 -24.65131 -24.03395 -23.54219 -22.59731 -22.26147 -21.87492 -21.26123 -20.13173 -19.25215 -18.45592 -17.85880 -17.71219 -17.28071 -16.84632 -16.65222 -16.35981 -16.30909 -16.09392 -15.94211 -15.77277 -15.45089 -15.39164 -15.09569 -14.93640 -14.85349 -14.67387 -14.53939 -14.28315 -14.22838 -14.16798 -14.03210 -13.92445 -13.57417 -13.38225 -13.19004 -13.05196 -12.73649 -12.66935 -12.53346 -12.33966 -12.10920 -12.03404 -11.94011 -11.59877 -11.48775 -11.42740 -11.27002 -10.96959 -10.76937 -10.41425 -10.17155 -10.05872 -9.95322 -9.82862 -9.54649 -9.06895 -5.01272 -0.68627 0.35470 0.40890 0.43413 0.49090 0.50591 1.30527 1.62301 1.79169 1.95674 2.07463 2.61305 2.83957 3.01759 3.40302 3.52384 3.55240 3.58914 3.63386 3.64565 3.72920 3.82693 3.88817 3.98801 4.01842 4.04841 4.05871 4.11692 4.17952 4.26622 4.27712 4.28682 4.31631 4.37647 4.47511 4.47933 4.61604 4.62919 4.65241 4.68076 4.72953 4.83024 4.88375 4.89945 4.92180 4.94198 5.07636 5.09089 5.11522 5.14167 5.14875 5.20812 5.21478 5.27469 5.35849 5.42012 5.49710 5.50484 5.58871 5.63640 5.65853 5.77737 5.80257 5.93632 6.12460 6.44972 6.76020 7.12026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.771 3.229 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.120 4.120 10 C -0.074 4.074 11 C -0.152 4.152 12 C 0.553 3.447 13 O -0.584 6.584 14 N -0.709 5.709 15 C 0.130 3.870 16 C -0.110 4.110 17 H 0.118 0.882 18 C -0.126 4.126 19 C -0.072 4.072 20 H 0.110 0.890 21 C -0.078 4.078 22 C -0.129 4.129 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.130 4.130 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.071 4.071 29 C -0.122 4.122 30 C -0.108 4.108 31 C -0.103 4.103 32 H 0.395 0.605 33 H 0.107 0.893 34 H -0.287 1.287 35 H -0.301 1.301 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.415 0.585 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.127 0.873 53 H 0.149 0.851 54 H 0.146 0.854 55 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.635 -2.476 -0.799 4.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.677 3.323 4 C -0.120 4.120 5 C -0.136 4.136 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.138 4.138 10 C -0.093 4.093 11 C -0.155 4.155 12 C 0.342 3.658 13 O -0.466 6.466 14 N -0.361 5.361 15 C 0.007 3.993 16 C -0.129 4.129 17 H 0.136 0.864 18 C -0.164 4.164 19 C -0.090 4.090 20 H 0.128 0.872 21 C -0.078 4.078 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.158 4.158 28 C -0.090 4.090 29 C -0.140 4.140 30 C -0.125 4.125 31 C -0.121 4.121 32 H 0.245 0.755 33 H 0.124 0.876 34 H -0.214 1.214 35 H -0.229 1.229 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.150 0.850 48 H 0.152 0.848 49 H 0.153 0.847 50 H 0.096 0.904 51 H 0.099 0.901 52 H 0.145 0.855 53 H 0.167 0.833 54 H 0.164 0.836 55 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.636 -1.808 -1.141 3.394 hybrid contribution 0.315 -0.751 -0.317 0.874 sum -2.321 -2.559 -1.458 3.750 Atomic orbital electron populations 1.86474 1.17145 1.82153 1.50524 1.25148 0.85336 1.10583 0.97258 0.93782 0.77897 0.75650 0.84928 1.20527 0.99346 0.95205 0.96886 1.21134 0.98362 1.00199 0.93893 1.21492 0.99254 0.93716 0.97999 1.18935 0.99191 0.93894 0.93963 1.19151 0.96069 0.93948 0.93164 1.21468 1.00338 0.93555 0.98433 1.21466 0.94696 1.00837 0.92265 1.20003 1.04317 0.95237 0.95966 1.18597 0.78851 0.82445 0.85941 1.90774 1.42811 1.67273 1.45706 1.45804 1.57285 1.08548 1.24485 1.21397 0.98897 0.91910 0.87133 1.22734 1.01034 0.90879 0.98208 0.86395 1.23179 0.99414 0.95427 0.98338 1.21534 0.95004 0.95252 0.97246 0.87157 1.19948 0.95135 0.93966 0.98784 1.21199 0.92667 1.00380 1.00438 1.21419 0.99035 0.95161 0.99406 1.21431 0.98736 0.94924 1.00604 1.21449 0.93009 1.00828 0.99501 1.21349 0.99133 0.94368 0.99890 1.22998 1.01891 0.94976 0.95911 1.21265 0.96971 0.93424 0.97367 1.21388 0.98239 1.01284 0.93041 1.21515 0.96904 1.00997 0.93120 1.21105 0.99047 0.93996 0.97931 0.75470 0.87604 1.21399 1.22921 0.83681 0.83546 0.82676 0.82474 0.74656 0.92363 0.92171 0.89922 0.90251 0.85548 0.85181 0.85035 0.84776 0.84731 0.90351 0.90118 0.85471 0.83343 0.83639 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.34 12.83 -148.98 -1.91 -1.57 16 2 C -0.07 0.10 2.80 71.24 0.20 0.30 16 3 Si 0.77 -2.00 29.79 68.60 2.04 0.04 16 4 C -0.12 0.15 5.36 -19.82 -0.11 0.04 16 5 C -0.12 0.33 8.65 22.23 0.19 0.52 16 6 C -0.11 0.24 9.43 22.49 0.21 0.45 16 7 C -0.06 0.06 5.88 -20.05 -0.12 -0.06 16 8 C -0.02 0.02 5.88 -20.00 -0.12 -0.10 16 9 C -0.12 0.42 9.41 22.44 0.21 0.63 16 10 C -0.07 0.26 9.52 22.49 0.21 0.47 16 11 C -0.15 -0.40 5.88 -20.06 -0.12 -0.51 16 12 C 0.55 3.34 7.77 86.75 0.67 4.01 16 13 O -0.58 -8.80 16.33 -3.95 -0.06 -8.86 16 14 N -0.71 0.88 5.51 -466.09 -2.57 -1.69 16 15 C 0.13 -0.11 5.51 86.38 0.48 0.36 16 16 C -0.11 0.66 3.75 -10.27 -0.04 0.63 16 17 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 18 C -0.13 0.64 7.01 31.12 0.22 0.85 16 19 C -0.07 0.27 3.98 -11.02 -0.04 0.22 16 20 H 0.11 -0.64 8.09 -2.39 -0.02 -0.66 16 21 C -0.08 -0.07 5.29 -19.87 -0.11 -0.17 16 22 C -0.13 -0.26 8.63 22.27 0.19 -0.07 16 23 C -0.13 -0.34 10.05 22.27 0.22 -0.11 16 24 C -0.14 -0.32 10.05 22.27 0.22 -0.09 16 25 C -0.13 -0.22 10.05 22.27 0.22 0.00 16 26 C -0.13 -0.15 9.71 22.27 0.22 0.07 16 27 C -0.12 0.48 7.11 31.12 0.22 0.70 16 28 C -0.07 -0.25 9.58 22.49 0.22 -0.04 16 29 C -0.12 -0.01 9.41 22.44 0.21 0.20 16 30 C -0.11 0.22 9.43 22.49 0.21 0.43 16 31 C -0.10 0.09 9.67 22.24 0.21 0.31 16 32 H 0.40 -3.38 8.70 -74.06 -0.64 -4.03 16 33 H 0.11 -0.01 7.96 -2.39 -0.02 -0.03 16 34 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 35 H -0.30 -1.58 7.11 99.48 0.71 -0.87 16 36 H 0.15 -0.99 4.89 -2.91 -0.01 -1.01 16 37 H 0.15 -0.88 6.19 -2.91 -0.02 -0.90 16 38 H 0.16 -1.31 6.19 -2.91 -0.02 -1.33 16 39 H 0.16 -1.63 6.39 -2.91 -0.02 -1.65 16 40 H 0.42 -3.26 6.49 -92.71 -0.60 -3.86 16 41 H 0.06 0.12 7.84 -2.39 -0.02 0.10 16 42 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H 0.08 -0.22 6.06 -2.39 -0.01 -0.23 16 45 H 0.13 0.00 6.65 -2.91 -0.02 -0.02 16 46 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 47 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 48 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 49 H 0.13 -0.34 8.06 -2.91 -0.02 -0.37 16 50 H 0.08 -0.14 7.69 -2.39 -0.02 -0.16 16 51 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 52 H 0.13 0.67 7.64 -2.91 -0.02 0.65 16 53 H 0.15 -0.59 6.19 -2.91 -0.02 -0.61 16 54 H 0.15 -0.93 6.19 -2.91 -0.02 -0.95 16 55 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 Total: 0.00 -22.80 444.46 1.14 -21.65 By element: Atomic # 1 Polarization: -18.37 SS G_CDS: -0.26 Total: -18.64 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 3.90 Total: 9.06 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -2.57 Total: -1.69 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.98 Total: -10.43 kcal Atomic # 14 Polarization: -2.00 SS G_CDS: 2.04 Total: 0.04 kcal Total: -22.80 1.14 -21.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_13158362.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.126 kcal (2) G-P(sol) polarization free energy of solvation -22.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds