Wall clock time and date at job start Tue Mar 9 2021 13:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86298 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47313 * 120.00324 * 2 1 3 5 5 C 1.34707 * 125.66278 * 64.99998 * 4 2 1 6 6 C 1.40977 * 107.02844 * 179.97438 * 5 4 2 7 7 C 1.35935 * 106.73820 * 359.97438 * 6 5 4 8 8 C 1.47821 * 125.92606 * 179.97438 * 7 6 5 9 9 C 1.39170 * 119.99911 * 180.02562 * 8 7 6 10 10 C 1.39465 * 119.75772 * 179.97438 * 9 8 7 11 11 C 1.47559 * 120.12057 * 180.02562 * 10 9 8 12 12 O 1.21589 * 120.00050 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00302 * 0.02562 * 11 10 9 14 14 C 1.46504 * 120.00207 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46983 * 179.97438 * 14 13 11 16 16 H 1.09002 * 112.85017 * 314.66585 * 15 14 13 17 17 C 1.53786 * 113.61503 * 85.86203 * 15 14 13 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 15 14 19 19 H 1.09003 * 113.61268 * 89.11946 * 18 17 15 20 20 C 1.50695 * 113.69721 * 220.01168 * 18 17 15 21 21 C 1.38242 * 120.00235 * 37.26109 * 20 18 17 22 22 C 1.38233 * 120.00098 * 179.76926 * 21 20 18 23 23 C 1.38234 * 119.99946 * 0.50684 * 22 21 20 24 24 C 1.38228 * 120.00105 * 359.74599 * 23 22 21 25 25 C 1.38231 * 120.00301 * 0.02562 * 24 23 22 26 26 C 1.53781 * 113.61337 * 183.46996 * 15 14 13 27 27 C 1.40213 * 119.75418 * 0.28299 * 10 9 8 28 28 O 1.35651 * 119.99805 * 179.72295 * 27 10 9 29 29 C 1.38810 * 119.99536 * 359.46253 * 27 10 9 30 30 C 1.37770 * 120.24853 * 0.51517 * 29 27 10 31 31 O 1.34335 * 125.66585 * 245.26409 * 4 2 1 32 32 H 0.96708 * 114.00001 * 299.99338 * 1 2 3 33 33 H 1.09000 * 109.47016 * 240.00141 * 2 1 3 34 34 H 1.48500 * 109.99843 * 178.68164 * 3 2 1 35 35 H 1.48497 * 110.00421 * 300.00409 * 3 2 1 36 36 H 1.08001 * 126.48717 * 0.02562 * 5 4 2 37 37 H 1.07993 * 126.62863 * 180.02562 * 6 5 4 38 38 H 1.08003 * 120.12175 * 359.96373 * 9 8 7 39 39 H 0.96999 * 120.00146 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47232 * 59.99775 * 14 13 11 41 41 H 1.08997 * 109.47041 * 299.99591 * 14 13 11 42 42 H 1.08992 * 113.61675 * 254.61398 * 17 15 14 43 43 H 1.09000 * 113.60973 * 25.51686 * 17 15 14 44 44 H 1.07999 * 119.99506 * 0.02562 * 21 20 18 45 45 H 1.07998 * 119.99634 * 180.22852 * 22 21 20 46 46 H 1.08004 * 119.99782 * 179.72878 * 23 22 21 47 47 H 1.08009 * 120.00304 * 179.97438 * 24 23 22 48 48 H 1.08002 * 120.00836 * 179.97438 * 25 24 23 49 49 H 1.08999 * 113.61567 * 334.48261 * 26 15 14 50 50 H 1.09000 * 113.61379 * 105.30384 * 26 15 14 51 51 H 0.96697 * 114.00092 * 89.99861 * 28 27 10 52 52 H 1.07999 * 119.87677 * 180.27800 * 29 27 10 53 53 H 1.07993 * 119.88123 * 179.74472 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7571 -2.0168 1.5091 6 6 2.3824 -2.2614 2.7487 7 6 2.9095 -1.0784 3.1615 8 6 3.6602 -0.8537 4.4149 9 6 4.1468 0.4148 4.7167 10 6 4.8540 0.6213 5.9009 11 6 5.3730 1.9630 6.2291 12 8 5.9896 2.1405 7.2619 13 7 5.1635 2.9919 5.3841 14 6 5.6783 4.3242 5.7102 15 6 5.3065 5.3020 4.5937 16 1 5.4905 4.8976 3.5983 17 6 3.9089 5.9222 4.7580 18 6 4.5295 7.2473 4.2763 19 1 4.5010 7.3749 3.1942 20 6 4.0278 8.4572 5.0215 21 6 3.7746 8.3776 6.3782 22 6 3.3189 9.4888 7.0627 23 6 3.1064 10.6767 6.3885 24 6 3.3545 10.7549 5.0309 25 6 3.8147 9.6451 4.3473 26 6 5.8747 6.7162 4.7988 27 6 5.0746 -0.4519 6.7758 28 8 5.7666 -0.2579 7.9262 29 6 4.5802 -1.7118 6.4672 30 6 3.8811 -1.9156 5.2976 31 8 2.6230 -0.1452 2.2337 32 1 -0.3933 0.4416 0.7652 33 1 1.7923 -0.5138 -0.8900 34 1 3.5346 1.7702 0.0321 35 1 1.5615 2.4680 -1.2084 36 1 1.2374 -2.7401 0.8982 37 1 2.4335 -3.2063 3.2692 38 1 3.9775 1.2363 4.0362 39 1 4.6719 2.8503 4.5600 40 1 6.7630 4.2806 5.8083 41 1 5.2418 4.6623 6.6500 42 1 3.1660 5.5122 4.0739 43 1 3.5633 5.9521 5.7914 44 1 3.9369 7.4484 6.9041 45 1 3.1247 9.4276 8.1233 46 1 2.7462 11.5437 6.9225 47 1 3.1880 11.6830 4.5040 48 1 4.0081 9.7060 3.2865 49 1 6.0656 6.9628 5.8432 50 1 6.7188 6.9461 4.1485 51 1 5.2141 -0.0130 8.6811 52 1 4.7474 -2.5361 7.1446 53 1 3.5027 -2.8991 5.0615 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_13259648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:57 Heat of formation + Delta-G solvation = -7.075090 kcal Electronic energy + Delta-G solvation = -36942.097397 eV Core-core repulsion = 32099.113181 eV Total energy + Delta-G solvation = -4842.984216 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.166 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.68873 -41.62339 -41.02483 -39.73202 -38.82790 -38.09686 -37.76840 -35.63024 -34.20402 -32.92678 -32.62656 -31.97344 -31.72243 -30.04176 -28.73589 -26.59979 -26.37517 -25.44747 -24.45535 -23.55672 -23.44643 -22.82610 -21.88392 -21.74997 -21.15753 -20.13736 -19.61826 -19.12174 -18.32813 -17.82803 -17.67158 -17.44440 -17.10682 -16.78459 -16.58232 -16.30750 -16.21140 -16.12759 -15.92976 -15.70561 -15.55161 -15.25351 -14.81545 -14.52547 -14.49805 -14.33685 -14.30370 -14.15693 -13.96428 -13.92699 -13.86404 -13.52646 -13.35681 -13.19314 -13.10940 -13.01746 -12.75982 -12.65652 -12.31040 -12.20311 -12.01237 -11.88912 -11.46252 -11.33809 -11.22853 -11.05201 -10.83339 -10.64359 -10.46308 -10.32157 -10.05263 -9.80577 -9.52382 -8.89756 -5.01978 -0.55107 -0.19525 0.45617 0.51412 0.78237 1.17689 1.44804 1.51046 1.77646 1.88656 1.92575 2.05454 2.64275 2.86167 3.12235 3.25420 3.40630 3.49475 3.58053 3.61120 3.68067 3.71621 3.92033 4.00885 4.02452 4.06806 4.08831 4.13334 4.19839 4.22080 4.28379 4.32443 4.32960 4.41575 4.49061 4.63371 4.64559 4.65537 4.68408 4.74910 4.80613 4.85347 4.88807 4.91390 4.95695 5.03264 5.10883 5.13693 5.15639 5.16938 5.21784 5.23368 5.37356 5.44703 5.51352 5.51894 5.61100 5.65848 5.79991 5.99889 6.14649 6.43711 6.63297 6.73487 7.13459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.031 4.031 3 Si 0.779 3.221 4 C -0.055 4.055 5 C -0.184 4.184 6 C -0.191 4.191 7 C 0.025 3.975 8 C -0.041 4.041 9 C -0.050 4.050 10 C -0.179 4.179 11 C 0.554 3.446 12 O -0.562 6.562 13 N -0.713 5.713 14 C 0.133 3.867 15 C -0.114 4.114 16 H 0.113 0.887 17 C -0.125 4.125 18 C -0.072 4.072 19 H 0.109 0.891 20 C -0.078 4.078 21 C -0.128 4.128 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.120 4.120 27 C 0.163 3.837 28 O -0.495 6.495 29 C -0.147 4.147 30 C -0.046 4.046 31 O -0.169 6.169 32 H 0.399 0.601 33 H 0.134 0.866 34 H -0.287 1.287 35 H -0.282 1.282 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.412 0.588 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.410 0.590 52 H 0.163 0.837 53 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.653 -0.380 -1.632 4.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.141 4.141 3 Si 0.683 3.317 4 C -0.105 4.105 5 C -0.203 4.203 6 C -0.210 4.210 7 C -0.025 4.025 8 C -0.041 4.041 9 C -0.069 4.069 10 C -0.183 4.183 11 C 0.342 3.658 12 O -0.442 6.442 13 N -0.366 5.366 14 C 0.009 3.991 15 C -0.132 4.132 16 H 0.131 0.869 17 C -0.162 4.162 18 C -0.090 4.090 19 H 0.127 0.873 20 C -0.078 4.078 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.157 4.157 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.158 4.158 27 C 0.116 3.884 28 O -0.309 6.309 29 C -0.165 4.165 30 C -0.064 4.064 31 O -0.067 6.067 32 H 0.250 0.750 33 H 0.151 0.849 34 H -0.213 1.213 35 H -0.209 1.209 36 H 0.177 0.823 37 H 0.191 0.809 38 H 0.169 0.831 39 H 0.250 0.750 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.271 0.729 52 H 0.181 0.819 53 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.093 0.242 -2.178 3.791 hybrid contribution -0.362 -0.573 -0.046 0.679 sum -3.455 -0.331 -2.223 4.122 Atomic orbital electron populations 1.86537 1.16091 1.82165 1.50300 1.24527 0.85343 1.11633 0.92584 0.93408 0.78115 0.75021 0.85172 1.23110 1.01005 0.94090 0.92294 1.21794 1.04116 0.96048 0.98380 1.22149 1.02145 0.99156 0.97523 1.20418 1.03392 0.87680 0.91017 1.17690 1.00410 0.94517 0.91531 1.21422 0.93607 0.97332 0.94500 1.20269 1.05584 0.93709 0.98701 1.18277 0.79358 0.84709 0.83446 1.90810 1.41874 1.84875 1.26643 1.45843 1.57558 1.08768 1.24434 1.21377 0.98661 0.80727 0.98304 1.22747 0.97552 0.93825 0.99098 0.86852 1.23228 0.96134 0.94406 1.02400 1.21571 0.96368 0.91146 0.99912 0.87270 1.19941 0.98568 0.95326 0.93932 1.21200 1.00033 0.98945 0.94365 1.21418 0.99518 0.93341 1.00694 1.21427 1.00678 0.98514 0.95097 1.21439 0.99264 0.99275 0.94862 1.21340 0.99914 0.92806 1.00693 1.22989 0.96755 0.94051 1.01992 1.18906 0.89769 0.91789 0.87922 1.84708 1.36363 1.91164 1.18674 1.21568 0.98843 0.96976 0.99157 1.21414 0.94549 0.99208 0.91191 1.83889 1.58182 1.37971 1.26676 0.75021 0.84925 1.21338 1.20885 0.82264 0.80924 0.83065 0.75040 0.92515 0.91928 0.89503 0.89961 0.85405 0.85123 0.85081 0.84881 0.84857 0.90233 0.90435 0.72902 0.81944 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.59 12.88 -148.98 -1.92 -0.33 16 2 C -0.03 0.09 2.98 71.24 0.21 0.31 16 3 Si 0.78 -3.23 32.11 68.60 2.20 -1.03 16 4 C -0.06 0.05 6.20 24.87 0.15 0.20 16 5 C -0.18 0.08 10.78 22.13 0.24 0.32 16 6 C -0.19 0.31 10.26 22.41 0.23 0.54 16 7 C 0.02 -0.01 7.03 24.27 0.17 0.16 16 8 C -0.04 0.06 5.87 -20.13 -0.12 -0.06 16 9 C -0.05 0.06 9.20 22.79 0.21 0.27 16 10 C -0.18 -0.52 5.88 -20.04 -0.12 -0.63 16 11 C 0.55 3.41 7.76 86.70 0.67 4.08 16 12 O -0.56 -7.93 15.14 17.00 0.26 -7.68 16 13 N -0.71 0.36 5.51 -466.24 -2.57 -2.21 16 14 C 0.13 -0.09 5.50 86.38 0.47 0.39 16 15 C -0.11 0.64 3.75 -10.26 -0.04 0.60 16 16 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 17 C -0.12 0.70 7.03 31.21 0.22 0.91 16 18 C -0.07 0.28 3.98 -10.92 -0.04 0.24 16 19 H 0.11 -0.63 8.09 -2.39 -0.02 -0.65 16 20 C -0.08 -0.03 5.29 -19.86 -0.11 -0.14 16 21 C -0.13 -0.17 8.63 22.27 0.19 0.02 16 22 C -0.13 -0.26 10.05 22.27 0.22 -0.03 16 23 C -0.14 -0.27 10.05 22.27 0.22 -0.04 16 24 C -0.13 -0.19 10.05 22.27 0.22 0.03 16 25 C -0.13 -0.12 9.71 22.27 0.22 0.10 16 26 C -0.12 0.45 7.11 31.12 0.22 0.67 16 27 C 0.16 0.49 6.72 22.89 0.15 0.64 16 28 O -0.50 -2.69 11.55 -68.67 -0.79 -3.48 16 29 C -0.15 0.33 9.96 22.30 0.22 0.55 16 30 C -0.05 0.18 9.54 22.55 0.22 0.40 16 31 O -0.17 0.06 8.80 -6.49 -0.06 0.01 16 32 H 0.40 -4.26 8.70 -74.05 -0.64 -4.90 16 33 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 34 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 35 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 36 H 0.16 -0.36 8.06 -2.91 -0.02 -0.38 16 37 H 0.17 -1.12 7.24 -2.91 -0.02 -1.14 16 38 H 0.15 -0.86 6.24 -2.91 -0.02 -0.87 16 39 H 0.41 -2.51 6.50 -92.71 -0.60 -3.11 16 40 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.06 0.09 7.88 -2.39 -0.02 0.07 16 42 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.08 -0.32 6.09 -2.39 -0.01 -0.33 16 44 H 0.13 -0.12 6.65 -2.91 -0.02 -0.14 16 45 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 46 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 47 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 48 H 0.13 -0.34 8.05 -2.91 -0.02 -0.36 16 49 H 0.08 -0.14 7.69 -2.39 -0.02 -0.16 16 50 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 51 H 0.41 -0.75 9.06 -74.06 -0.67 -1.42 16 52 H 0.16 -1.01 8.06 -2.91 -0.02 -1.03 16 53 H 0.16 -1.52 6.96 -2.91 -0.02 -1.55 16 Total: 0.00 -23.97 443.48 0.28 -23.68 By element: Atomic # 1 Polarization: -17.60 SS G_CDS: -0.89 Total: -18.49 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 4.05 Total: 9.52 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -2.57 Total: -2.21 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -2.51 Total: -11.48 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.20 Total: -1.03 kcal Total: -23.97 0.28 -23.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_13259648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.606 kcal (2) G-P(sol) polarization free energy of solvation -23.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds