Wall clock time and date at job start Tue Mar 9 2021 13:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38977 * 119.96058 * 2 1 4 4 O 1.35717 * 119.90912 * 359.97133 * 3 2 1 5 5 C 1.39012 * 120.17932 * 179.97438 * 3 2 1 6 6 C 1.50705 * 119.95412 * 179.97438 * 5 3 2 7 7 O 1.42906 * 109.46895 * 284.99625 * 6 5 3 8 8 Si 1.86303 * 109.47019 * 164.99989 * 6 5 3 9 9 C 1.37682 * 120.08962 * 359.67073 * 5 3 2 10 10 C 1.39753 * 119.90860 * 0.60392 * 9 5 3 11 11 C 1.47606 * 120.08584 * 179.69592 * 10 9 5 12 12 O 1.21584 * 119.99948 * 359.72276 * 11 10 9 13 13 N 1.34772 * 119.99532 * 179.72331 * 11 10 9 14 14 C 1.46505 * 119.99813 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47283 * 180.02562 * 14 13 11 16 16 H 1.08999 * 112.84933 * 316.19853 * 15 14 13 17 17 C 1.53781 * 113.69221 * 87.46423 * 15 14 13 18 18 C 1.54049 * 87.08031 * 139.98770 * 17 15 14 19 19 H 1.09000 * 113.61076 * 89.06984 * 18 17 15 20 20 C 1.50690 * 113.70074 * 220.05368 * 18 17 15 21 21 C 1.38242 * 119.99897 * 37.14728 * 20 18 17 22 22 C 1.38238 * 119.99898 * 179.79260 * 21 20 18 23 23 C 1.38237 * 119.99870 * 0.43676 * 22 21 20 24 24 C 1.38229 * 120.00133 * 359.81866 * 23 22 21 25 25 C 1.38233 * 120.00317 * 359.97201 * 24 23 22 26 26 C 1.53781 * 113.61503 * 185.00012 * 15 14 13 27 27 C 1.37727 * 119.95594 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47578 * 270.02500 * 1 2 3 29 29 H 1.09001 * 109.46832 * 30.02821 * 1 2 3 30 30 H 1.09003 * 109.47038 * 150.02029 * 1 2 3 31 31 H 0.96702 * 113.99550 * 89.99593 * 4 3 2 32 32 H 1.08996 * 109.47231 * 44.99132 * 6 5 3 33 33 H 0.96706 * 113.99885 * 300.00272 * 7 6 5 34 34 H 1.48498 * 110.00087 * 58.68015 * 8 6 5 35 35 H 1.48497 * 109.99788 * 179.97438 * 8 6 5 36 36 H 1.07998 * 120.04264 * 180.32362 * 9 5 3 37 37 H 0.97001 * 120.00396 * 0.02562 * 13 11 10 38 38 H 1.09000 * 109.47315 * 59.99868 * 14 13 11 39 39 H 1.09001 * 109.46863 * 300.00267 * 14 13 11 40 40 H 1.09005 * 113.61471 * 254.54353 * 17 15 14 41 41 H 1.08996 * 113.61178 * 25.35695 * 17 15 14 42 42 H 1.07998 * 120.00098 * 0.02562 * 21 20 18 43 43 H 1.08001 * 119.99489 * 180.27799 * 22 21 20 44 44 H 1.08004 * 119.99323 * 179.83552 * 23 22 21 45 45 H 1.07998 * 120.00169 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.00575 * 180.02562 * 25 24 23 47 47 H 1.09002 * 113.61445 * 334.48413 * 26 15 14 48 48 H 1.09002 * 113.61408 * 105.30144 * 26 15 14 49 49 H 1.07999 * 120.04692 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 -0.0006 5 6 3.5911 1.2094 0.0005 6 6 4.3386 2.5180 0.0000 7 8 4.2726 3.1036 -1.3019 8 14 6.1196 2.2160 0.4555 9 6 4.2859 0.0207 0.0079 10 6 3.5918 -1.1922 0.0021 11 6 4.3328 -2.4688 0.0032 12 8 5.5486 -2.4660 0.0041 13 7 3.6616 -3.6375 0.0032 14 6 4.3970 -4.9046 0.0038 15 6 3.4054 -6.0697 0.0030 16 1 2.5785 -5.9223 0.6977 17 6 2.9585 -6.5000 -1.4041 18 6 3.0503 -7.9538 -0.9030 19 1 2.1265 -8.3204 -0.4555 20 6 3.6309 -8.9077 -1.9148 21 6 4.6595 -8.4963 -2.7418 22 6 5.1950 -9.3728 -3.6671 23 6 4.6959 -10.6577 -3.7715 24 6 3.6639 -11.0673 -2.9481 25 6 3.1313 -10.1923 -2.0199 26 6 4.0751 -7.4486 0.1263 27 6 2.1946 -1.1933 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.3219 2.7182 0.8827 32 1 3.8875 3.1944 0.7258 33 1 4.6566 2.5552 -1.9998 34 1 6.7371 1.2702 -0.5086 35 1 6.8678 3.4987 0.4578 36 1 5.3659 0.0258 0.0136 37 1 2.6915 -3.6397 0.0022 38 1 5.0235 -4.9607 0.8939 39 1 5.0241 -4.9610 -0.8860 40 1 1.9448 -6.1875 -1.6549 41 1 3.6807 -6.2592 -2.1842 42 1 5.0471 -7.4915 -2.6625 43 1 6.0016 -9.0527 -4.3101 44 1 5.1126 -11.3415 -4.4962 45 1 3.2737 -12.0710 -3.0300 46 1 2.3253 -10.5125 -1.3764 47 1 5.1032 -7.4685 -0.2352 48 1 3.9640 -7.9014 1.1116 49 1 1.6547 -2.1286 0.0005 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_13287732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:09 Heat of formation + Delta-G solvation = -34.764610 kcal Electronic energy + Delta-G solvation = -30105.514345 eV Core-core repulsion = 25964.690035 eV Total energy + Delta-G solvation = -4140.824310 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.75311 -41.13196 -40.32208 -38.92631 -37.98463 -37.50296 -35.76057 -34.00325 -32.53312 -31.82883 -31.65400 -28.79705 -27.97627 -26.87169 -26.60328 -25.20621 -24.03315 -23.53670 -22.13748 -21.85619 -21.42119 -20.08667 -19.61064 -18.84952 -18.13165 -17.88645 -17.34934 -16.83938 -16.72098 -16.37705 -16.32285 -16.05648 -15.91213 -15.86676 -15.51161 -15.09219 -14.79366 -14.70959 -14.46140 -14.32473 -14.21562 -14.05843 -13.93609 -13.87385 -13.37039 -13.28450 -13.05792 -12.90842 -12.78614 -12.65323 -12.47350 -12.32629 -12.02700 -11.93572 -11.63424 -11.47844 -11.41625 -11.26193 -10.97297 -10.63154 -10.24268 -9.97382 -9.82826 -9.63511 -9.54263 -5.02715 -0.38808 0.07225 0.43505 0.49129 1.19748 1.51640 1.61544 1.84985 2.04435 2.56835 2.84017 3.12690 3.30339 3.49406 3.53405 3.59063 3.60523 3.70268 3.76087 3.99405 4.02496 4.05560 4.11926 4.17235 4.18171 4.27349 4.30840 4.37880 4.47127 4.50059 4.62112 4.62843 4.64172 4.72929 4.76002 4.83814 4.84397 4.90017 4.95092 5.04947 5.07983 5.11032 5.12099 5.15224 5.21015 5.22743 5.33612 5.35465 5.50558 5.59019 5.61470 5.63712 5.78233 6.12565 6.38769 6.43719 6.77306 7.10726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C 0.159 3.841 4 O -0.496 6.496 5 C -0.153 4.153 6 C -0.061 4.061 7 O -0.540 6.540 8 Si 0.749 3.251 9 C -0.066 4.066 10 C -0.151 4.151 11 C 0.556 3.444 12 O -0.582 6.582 13 N -0.707 5.707 14 C 0.130 3.870 15 C -0.109 4.109 16 H 0.120 0.880 17 C -0.127 4.127 18 C -0.072 4.072 19 H 0.111 0.889 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.053 4.053 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.413 0.587 32 H 0.134 0.866 33 H 0.382 0.618 34 H -0.297 1.297 35 H -0.292 1.292 36 H 0.130 0.870 37 H 0.416 0.584 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 -3.358 4.261 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C 0.113 3.887 4 O -0.310 6.310 5 C -0.154 4.154 6 C -0.171 4.171 7 O -0.348 6.348 8 Si 0.656 3.344 9 C -0.085 4.085 10 C -0.154 4.154 11 C 0.344 3.656 12 O -0.463 6.463 13 N -0.359 5.359 14 C 0.006 3.994 15 C -0.128 4.128 16 H 0.138 0.862 17 C -0.164 4.164 18 C -0.090 4.090 19 H 0.129 0.871 20 C -0.078 4.078 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.158 4.158 27 C -0.072 4.072 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.274 0.726 32 H 0.151 0.849 33 H 0.231 0.769 34 H -0.224 1.224 35 H -0.219 1.219 36 H 0.148 0.852 37 H 0.254 0.746 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.703 -2.901 3.761 7.422 hybrid contribution 0.000 -0.037 -1.043 1.043 sum -5.704 -2.938 2.718 6.968 Atomic orbital electron populations 1.20769 0.88197 1.04028 1.03833 1.20454 0.98348 0.91703 1.01554 1.18431 0.88597 0.85937 0.95696 1.84736 1.75416 1.35605 1.35244 1.20505 0.94217 0.95357 1.05360 1.24894 1.09910 0.94020 0.88258 1.86615 1.82895 1.48188 1.17083 0.94196 0.73285 0.77102 0.89832 1.21106 1.00343 0.91075 0.95978 1.19797 0.94413 0.92525 1.08663 1.18416 0.86749 0.84688 0.75726 1.90793 1.15404 1.88220 1.51921 1.45781 1.11191 1.04856 1.74114 1.21411 0.94640 0.81588 1.01719 1.22728 0.98698 0.92562 0.98774 0.86218 1.23231 1.02690 0.94317 0.96205 1.21578 0.99411 0.93255 0.94772 0.87084 1.19958 0.96088 0.94854 0.96918 1.21200 0.97130 1.00069 0.96298 1.21417 1.00389 0.94268 0.99015 1.21428 0.97538 0.96682 1.00090 1.21449 0.96854 1.00486 0.96008 1.21351 1.00686 0.93550 0.99097 1.22991 0.98440 0.94663 0.99666 1.21369 0.91539 0.99113 0.95158 0.89305 0.91337 0.89756 0.72604 0.84870 0.76887 1.22412 1.21927 0.85225 0.74604 0.91864 0.92469 0.89904 0.90373 0.85572 0.85257 0.85082 0.84782 0.84677 0.90439 0.90071 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.80 9.78 71.23 0.70 1.50 16 2 C -0.12 0.37 5.89 -19.81 -0.12 0.25 16 3 C 0.16 -0.03 6.66 22.63 0.15 0.12 16 4 O -0.50 0.69 11.84 -90.39 -1.07 -0.39 16 5 C -0.15 -0.23 5.27 -19.81 -0.10 -0.33 16 6 C -0.06 -0.08 2.37 71.24 0.17 0.09 16 7 O -0.54 -2.95 12.88 -148.98 -1.92 -4.87 16 8 Si 0.75 1.69 30.23 68.60 2.07 3.76 16 9 C -0.07 -0.25 8.20 22.50 0.18 -0.07 16 10 C -0.15 -0.28 5.88 -20.08 -0.12 -0.40 16 11 C 0.56 2.77 7.76 86.72 0.67 3.44 16 12 O -0.58 -8.22 16.34 -3.98 -0.07 -8.29 16 13 N -0.71 1.75 5.51 -466.20 -2.57 -0.81 16 14 C 0.13 -0.26 5.51 86.38 0.48 0.22 16 15 C -0.11 0.77 3.75 -10.27 -0.04 0.73 16 16 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 17 C -0.13 0.73 7.02 31.21 0.22 0.94 16 18 C -0.07 0.31 3.99 -10.92 -0.04 0.27 16 19 H 0.11 -0.73 8.10 -2.39 -0.02 -0.75 16 20 C -0.08 -0.04 5.29 -19.87 -0.11 -0.14 16 21 C -0.13 -0.23 8.63 22.27 0.19 -0.04 16 22 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 23 C -0.14 -0.31 10.05 22.27 0.22 -0.09 16 24 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 25 C -0.13 -0.10 9.71 22.27 0.22 0.11 16 26 C -0.12 0.57 7.10 31.12 0.22 0.79 16 27 C -0.05 0.22 9.18 22.51 0.21 0.42 16 28 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 29 H 0.07 -0.31 7.52 -2.39 -0.02 -0.33 16 30 H 0.08 -0.80 8.08 -2.39 -0.02 -0.82 16 31 H 0.41 -4.44 9.06 -74.06 -0.67 -5.11 16 32 H 0.13 -0.31 7.82 -2.39 -0.02 -0.33 16 33 H 0.38 0.38 8.70 -74.05 -0.64 -0.27 16 34 H -0.30 -2.64 6.69 99.48 0.67 -1.97 16 35 H -0.29 -2.46 7.11 99.48 0.71 -1.75 16 36 H 0.13 0.83 4.43 -2.91 -0.01 0.81 16 37 H 0.42 -3.84 6.49 -92.71 -0.60 -4.44 16 38 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.06 0.08 7.85 -2.39 -0.02 0.06 16 40 H 0.08 -0.62 8.14 -2.38 -0.02 -0.64 16 41 H 0.08 -0.25 6.07 -2.39 -0.01 -0.27 16 42 H 0.13 -0.02 6.65 -2.91 -0.02 -0.04 16 43 H 0.13 -0.03 8.06 -2.91 -0.02 -0.06 16 44 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 45 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 46 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 47 H 0.08 -0.18 7.69 -2.39 -0.02 -0.20 16 48 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H 0.16 -1.83 6.39 -2.91 -0.02 -1.84 16 Total: 0.00 -23.40 400.53 -0.91 -24.31 By element: Atomic # 1 Polarization: -20.55 SS G_CDS: -0.91 Total: -21.46 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 3.55 Total: 7.75 kcal Atomic # 7 Polarization: 1.75 SS G_CDS: -2.57 Total: -0.81 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -3.05 Total: -13.54 kcal Atomic # 14 Polarization: 1.69 SS G_CDS: 2.07 Total: 3.76 kcal Total: -23.40 -0.91 -24.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_13287732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.456 kcal (2) G-P(sol) polarization free energy of solvation -23.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds