Wall clock time and date at job start Tue Mar 9 2021 13:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86294 * 109.47066 * 2 1 4 4 C 1.50696 * 109.46967 * 239.99686 * 2 1 3 5 5 C 1.32692 * 124.68786 * 300.30182 * 4 2 1 6 6 C 1.44507 * 113.09670 * 180.19585 * 5 4 2 7 7 C 1.47039 * 123.49097 * 179.76968 * 6 5 4 8 8 O 1.21663 * 120.00529 * 179.72908 * 7 6 5 9 9 N 1.34775 * 120.00173 * 359.72955 * 7 6 5 10 10 C 1.46504 * 120.00207 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46983 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.85017 * 314.66585 * 11 10 9 13 13 C 1.53786 * 113.61503 * 85.86203 * 11 10 9 14 14 C 1.54049 * 86.98426 * 140.01654 * 13 11 10 15 15 H 1.08996 * 113.68970 * 89.12734 * 14 13 11 16 16 C 1.50703 * 113.61806 * 220.02177 * 14 13 11 17 17 C 1.38230 * 120.00245 * 37.22814 * 16 14 13 18 18 C 1.38237 * 120.00154 * 179.80898 * 17 16 14 19 19 C 1.38229 * 119.99663 * 0.42018 * 18 17 16 20 20 C 1.38235 * 120.00438 * 359.80507 * 19 18 17 21 21 C 1.38237 * 119.99740 * 0.02562 * 20 19 18 22 22 C 1.53781 * 113.61337 * 183.46996 * 11 10 9 23 23 C 1.36225 * 113.01884 * 359.49941 * 6 5 4 24 24 Cl 1.73596 * 124.60988 * 180.28952 * 23 6 5 25 25 S 1.70453 * 110.78548 * 0.26816 * 23 6 5 26 26 H 0.96696 * 113.99659 * 60.00042 * 1 2 3 27 27 H 1.09002 * 109.47241 * 120.00061 * 2 1 3 28 28 H 1.48504 * 110.00117 * 59.99966 * 3 2 1 29 29 H 1.48501 * 109.99984 * 181.31921 * 3 2 1 30 30 H 1.08001 * 123.45224 * 359.96526 * 5 4 2 31 31 H 0.96999 * 120.00146 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.47232 * 59.99775 * 10 9 7 33 33 H 1.08997 * 109.47041 * 299.99591 * 10 9 7 34 34 H 1.08992 * 113.61675 * 254.61398 * 13 11 10 35 35 H 1.09000 * 113.60973 * 25.51686 * 13 11 10 36 36 H 1.08007 * 119.99998 * 359.97438 * 17 16 14 37 37 H 1.07996 * 119.99527 * 180.20062 * 18 17 16 38 38 H 1.08006 * 119.99795 * 179.79300 * 19 18 17 39 39 H 1.07994 * 120.00328 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00198 * 179.97438 * 21 20 19 41 41 H 1.08999 * 113.61567 * 334.48261 * 22 11 10 42 42 H 1.09000 * 113.61379 * 105.30384 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6640 -1.9740 -1.5348 6 6 2.2777 -2.4012 -2.7714 7 6 2.1356 -3.7574 -3.3216 8 8 2.6766 -4.0476 -4.3719 9 7 1.4060 -4.6791 -2.6623 10 6 1.2649 -6.0305 -3.2101 11 6 0.3948 -6.8719 -2.2742 12 1 0.6677 -6.7569 -1.2252 13 6 -1.1132 -6.7262 -2.5380 14 6 -1.2208 -8.2425 -2.2887 15 1 -1.3898 -8.5037 -1.2441 16 6 -2.1686 -8.9431 -3.2278 17 6 -2.2486 -8.5490 -4.5503 18 6 -3.1152 -9.1942 -5.4127 19 6 -3.9081 -10.2278 -4.9503 20 6 -3.8316 -10.6189 -3.6267 21 6 -2.9624 -9.9760 -2.7652 22 6 0.2532 -8.3378 -2.7168 23 6 2.9966 -1.4157 -3.3776 24 17 3.8500 -1.5983 -4.8783 25 16 2.9440 0.0215 -2.4627 26 1 -0.3932 0.4417 -0.7650 27 1 1.7924 -0.5138 0.8900 28 1 1.5615 2.4679 1.2085 29 1 3.5346 1.7702 -0.0321 30 1 1.0536 -2.6183 -0.9194 31 1 0.9749 -4.4479 -1.8246 32 1 2.2490 -6.4900 -3.3018 33 1 0.7959 -5.9771 -4.1926 34 1 -1.6305 -6.1219 -1.7928 35 1 -1.3513 -6.4339 -3.5608 36 1 -1.6321 -7.7387 -4.9106 37 1 -3.1753 -8.8883 -6.4467 38 1 -4.5876 -10.7297 -5.6233 39 1 -4.4513 -11.4261 -3.2654 40 1 -2.9029 -10.2812 -1.7309 41 1 0.3880 -8.4854 -3.7883 42 1 0.8395 -9.0337 -2.1166 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_13431040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:38 Heat of formation + Delta-G solvation = 16.118480 kcal Electronic energy + Delta-G solvation = -26449.264446 eV Core-core repulsion = 22514.218857 eV Total energy + Delta-G solvation = -3935.045589 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.069 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36462 -40.76570 -39.10728 -38.73860 -37.97421 -36.93433 -35.62503 -32.29057 -31.77364 -31.63125 -29.14836 -26.88039 -26.61906 -25.77163 -24.20108 -23.52739 -22.21958 -21.81295 -20.79950 -20.01993 -19.36126 -18.23753 -17.88627 -17.54227 -16.94835 -16.64003 -16.49340 -16.15214 -16.01312 -15.72513 -15.62717 -15.38074 -14.78428 -14.75582 -14.64497 -14.33020 -14.27046 -14.11245 -14.03936 -13.86995 -13.36914 -13.04614 -12.91323 -12.66567 -12.58959 -12.39990 -12.32206 -12.15087 -12.02275 -11.86417 -11.47897 -11.35343 -11.23466 -10.88713 -10.58965 -10.20412 -9.88374 -9.82055 -9.64029 -9.53855 -5.12271 -0.63107 -0.19474 0.44170 0.48156 0.49877 0.72645 1.04517 1.19850 1.57762 1.90566 2.16869 2.17802 2.84769 3.28527 3.54726 3.60059 3.60365 3.69044 3.85581 3.89711 4.00071 4.05719 4.12230 4.18539 4.27387 4.30406 4.39592 4.46906 4.49122 4.62631 4.64217 4.74689 4.78143 4.84289 4.89899 4.94780 4.97786 5.09202 5.12562 5.15653 5.22461 5.37424 5.50719 5.59643 5.64367 5.78566 6.13217 6.45510 6.70863 7.13992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.018 4.018 3 Si 0.710 3.290 4 C -0.228 4.228 5 C -0.068 4.068 6 C -0.166 4.166 7 C 0.567 3.433 8 O -0.563 6.563 9 N -0.706 5.706 10 C 0.133 3.867 11 C -0.110 4.110 12 H 0.116 0.884 13 C -0.125 4.125 14 C -0.072 4.072 15 H 0.109 0.891 16 C -0.078 4.078 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.130 4.130 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.140 4.140 24 Cl 0.002 6.998 25 S 0.264 5.736 26 H 0.398 0.602 27 H 0.134 0.866 28 H -0.266 1.266 29 H -0.261 1.261 30 H 0.180 0.820 31 H 0.414 0.586 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.078 0.922 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 2.199 4.361 5.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.132 4.132 3 Si 0.613 3.387 4 C -0.345 4.345 5 C -0.096 4.096 6 C -0.186 4.186 7 C 0.353 3.647 8 O -0.443 6.443 9 N -0.359 5.359 10 C 0.010 3.990 11 C -0.129 4.129 12 H 0.134 0.866 13 C -0.162 4.162 14 C -0.090 4.090 15 H 0.127 0.873 16 C -0.078 4.078 17 C -0.146 4.146 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.287 4.287 24 Cl 0.031 6.969 25 S 0.529 5.471 26 H 0.249 0.751 27 H 0.152 0.848 28 H -0.191 1.191 29 H -0.186 1.186 30 H 0.197 0.803 31 H 0.252 0.748 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.822 3.687 4.251 5.915 hybrid contribution -0.490 -2.097 0.040 2.154 sum -2.313 1.590 4.291 5.127 Atomic orbital electron populations 1.86515 1.16071 1.81965 1.50482 1.24422 0.85552 1.08704 0.94500 0.94292 0.79864 0.76076 0.88482 1.24955 1.07212 0.99235 1.03124 1.21117 0.99258 0.95455 0.93792 1.20343 1.04902 0.94830 0.98523 1.17723 0.78764 0.84389 0.83837 1.90862 1.48553 1.80952 1.23944 1.45713 1.51882 1.11578 1.26714 1.21369 0.99868 0.80756 0.97031 1.22724 0.94705 0.95057 1.00372 0.86633 1.23213 0.95238 0.95138 1.02635 1.21574 0.93244 0.95487 0.98685 0.87265 1.19949 0.97137 0.96303 0.94452 1.21199 0.99412 1.00445 0.93572 1.21418 0.96596 0.96547 1.00435 1.21431 0.99968 0.97859 0.96432 1.21446 0.99082 1.00306 0.93968 1.21345 0.96477 0.96366 1.00566 1.22986 0.95219 0.95719 1.01822 1.25803 1.03788 1.02533 0.96567 1.98425 1.73929 1.97293 1.27261 1.83239 1.46409 1.07089 1.10368 0.75109 0.84848 1.19086 1.18639 0.80271 0.74818 0.92266 0.92257 0.89962 0.90158 0.85513 0.85148 0.85024 0.84798 0.84798 0.90323 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.53 12.85 -148.98 -1.91 1.62 16 2 C -0.02 0.12 2.95 71.23 0.21 0.33 16 3 Si 0.71 -4.20 30.90 68.60 2.12 -2.08 16 4 C -0.23 1.09 5.68 24.51 0.14 1.23 16 5 C -0.07 0.26 9.71 22.70 0.22 0.48 16 6 C -0.17 -0.45 5.98 -19.84 -0.12 -0.57 16 7 C 0.57 3.53 7.79 86.55 0.67 4.20 16 8 O -0.56 -8.13 14.91 -4.23 -0.06 -8.20 16 9 N -0.71 0.63 5.53 -466.72 -2.58 -1.95 16 10 C 0.13 -0.09 5.50 86.38 0.47 0.38 16 11 C -0.11 0.62 3.75 -10.26 -0.04 0.58 16 12 H 0.12 -0.98 8.14 -2.39 -0.02 -1.00 16 13 C -0.13 0.59 7.02 31.21 0.22 0.81 16 14 C -0.07 0.24 3.99 -10.92 -0.04 0.20 16 15 H 0.11 -0.58 8.09 -2.39 -0.02 -0.60 16 16 C -0.08 -0.08 5.29 -19.87 -0.11 -0.19 16 17 C -0.13 -0.27 8.63 22.27 0.19 -0.08 16 18 C -0.13 -0.35 10.05 22.27 0.22 -0.12 16 19 C -0.14 -0.33 10.05 22.27 0.22 -0.11 16 20 C -0.13 -0.25 10.05 22.27 0.22 -0.02 16 21 C -0.13 -0.18 9.71 22.27 0.22 0.04 16 22 C -0.12 0.43 7.11 31.12 0.22 0.65 16 23 C -0.14 -0.57 6.87 67.35 0.46 -0.11 16 24 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.06 16 25 S 0.26 -0.64 20.17 -56.49 -1.14 -1.78 16 26 H 0.40 -5.45 8.70 -74.06 -0.64 -6.09 16 27 H 0.13 -0.99 7.96 -2.39 -0.02 -1.01 16 28 H -0.27 -0.14 7.11 99.48 0.71 0.57 16 29 H -0.26 0.35 7.11 99.48 0.71 1.06 16 30 H 0.18 -1.61 7.10 -2.91 -0.02 -1.63 16 31 H 0.41 -2.92 7.02 -92.71 -0.65 -3.57 16 32 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.06 0.13 7.88 -2.39 -0.02 0.11 16 34 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.08 -0.21 6.08 -2.39 -0.01 -0.23 16 36 H 0.13 0.01 6.64 -2.91 -0.02 -0.01 16 37 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 38 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 39 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 40 H 0.13 -0.29 8.05 -2.91 -0.02 -0.32 16 41 H 0.08 -0.11 7.69 -2.39 -0.02 -0.13 16 42 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: 0.00 -18.38 377.83 -0.44 -18.81 By element: Atomic # 1 Polarization: -13.87 SS G_CDS: -0.18 Total: -14.05 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 3.40 Total: 7.69 kcal Atomic # 7 Polarization: 0.63 SS G_CDS: -2.58 Total: -1.95 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -1.98 Total: -6.58 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.12 Total: -2.08 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -1.14 Total: -1.78 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.06 kcal Total: -18.38 -0.44 -18.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_13431040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.933 kcal (2) G-P(sol) polarization free energy of solvation -18.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds