Wall clock time and date at job start Tue Mar 9 2021 13:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47040 * 2 1 4 4 C 1.50702 * 109.47038 * 240.00015 * 2 1 3 5 5 C 1.38246 * 119.96958 * 120.00249 * 4 2 1 6 6 C 1.38295 * 120.10744 * 179.97438 * 5 4 2 7 7 C 1.38119 * 120.05606 * 0.04350 * 6 5 4 8 8 C 1.38756 * 119.94481 * 359.97438 * 7 6 5 9 9 O 1.35905 * 120.05196 * 179.97438 * 8 7 6 10 10 C 1.42895 * 117.00157 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47126 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99668 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00231 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00234 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47084 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.90903 * 43.74420 * 15 14 13 17 17 C 1.53784 * 113.61330 * 174.99792 * 15 14 13 18 18 C 1.53787 * 87.07923 * 139.97966 * 17 15 14 19 19 H 1.09004 * 113.60869 * 89.20131 * 18 17 15 20 20 C 1.50694 * 113.61364 * 220.01686 * 18 17 15 21 21 C 1.38242 * 119.99926 * 59.72979 * 20 18 17 22 22 C 1.38235 * 119.99791 * 179.78667 * 21 20 18 23 23 C 1.38233 * 120.00021 * 0.44325 * 22 21 20 24 24 C 1.38232 * 120.00369 * 359.80851 * 23 22 21 25 25 C 1.38235 * 120.00304 * 240.00393 * 20 18 17 26 26 C 1.53778 * 87.08035 * 334.56830 * 18 17 15 27 27 C 1.38168 * 119.97126 * 300.29781 * 4 2 1 28 28 H 0.96706 * 114.00267 * 60.00060 * 1 2 3 29 29 H 1.08994 * 109.46795 * 119.99961 * 2 1 3 30 30 H 1.48501 * 110.00035 * 298.67994 * 3 2 1 31 31 H 1.48499 * 109.99939 * 59.99926 * 3 2 1 32 32 H 1.07993 * 119.94583 * 359.97438 * 5 4 2 33 33 H 1.07995 * 119.96587 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.02665 * 179.97438 * 7 6 5 35 35 H 1.08993 * 109.47688 * 59.99345 * 10 9 8 36 36 H 1.09007 * 109.46951 * 299.99637 * 10 9 8 37 37 H 0.97005 * 119.99833 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.47092 * 59.99495 * 14 13 11 39 39 H 1.08995 * 109.46661 * 299.99459 * 14 13 11 40 40 H 1.09004 * 113.61451 * 25.43452 * 17 15 14 41 41 H 1.08994 * 113.61477 * 254.52754 * 17 15 14 42 42 H 1.08000 * 119.99657 * 359.97438 * 21 20 18 43 43 H 1.07999 * 119.99874 * 180.27550 * 22 21 20 44 44 H 1.08006 * 119.99631 * 179.83628 * 23 22 21 45 45 H 1.07996 * 120.00338 * 179.97438 * 24 23 22 46 46 H 1.07995 * 119.99916 * 359.97438 * 25 20 18 47 47 H 1.08999 * 113.61111 * 139.98327 * 26 18 17 48 48 H 1.08999 * 113.61280 * 270.79710 * 26 18 17 49 49 H 1.08001 * 120.03112 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7261 -0.0380 -2.1401 6 6 3.1891 -0.6873 -3.2699 7 6 2.8575 -2.0094 -3.4927 8 6 2.0596 -2.6864 -2.5814 9 8 1.7316 -3.9873 -2.7987 10 6 2.2435 -4.5958 -3.9859 11 6 1.7787 -6.0276 -4.0571 12 8 1.0784 -6.4822 -3.1773 13 7 2.1420 -6.8032 -5.0977 14 6 1.6906 -8.1952 -5.1665 15 6 2.2386 -8.8468 -6.4377 16 1 3.2861 -8.6066 -6.6200 17 6 1.9230 -10.3480 -6.5457 18 6 1.6623 -10.1053 -8.0418 19 1 2.5521 -10.2106 -8.6626 20 6 0.4795 -10.8683 -8.5800 21 6 -0.7779 -10.6623 -8.0437 22 6 -1.8637 -11.3590 -8.5403 23 6 -1.6906 -12.2682 -9.5670 24 6 -0.4324 -12.4780 -10.0998 25 6 0.6527 -11.7782 -9.6061 26 6 1.3382 -8.6492 -7.6686 27 6 1.5921 -2.0314 -1.4517 28 1 -0.3934 0.4417 -0.7651 29 1 1.7922 -0.5138 0.8900 30 1 1.5879 2.4585 -1.2242 31 1 1.5614 2.4679 1.2085 32 1 2.9858 0.9960 -1.9680 33 1 3.8101 -0.1599 -3.9787 34 1 3.2189 -2.5159 -4.3754 35 1 3.3329 -4.5675 -3.9681 36 1 1.8802 -4.0525 -4.8584 37 1 2.7024 -6.4397 -5.8011 38 1 0.6011 -8.2234 -5.1848 39 1 2.0535 -8.7384 -4.2940 40 1 1.0342 -10.6484 -5.9908 41 1 2.7820 -10.9899 -6.3507 42 1 -0.9124 -9.9550 -7.2387 43 1 -2.8467 -11.1949 -8.1244 44 1 -2.5385 -12.8145 -9.9533 45 1 -0.2971 -13.1887 -10.9017 46 1 1.6356 -11.9420 -10.0223 47 1 1.7251 -7.9196 -8.3800 48 1 0.2892 -8.4848 -7.4220 49 1 0.9669 -2.5548 -0.7434 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:42 Heat of formation + Delta-G solvation = -21.858416 kcal Electronic energy + Delta-G solvation = -29039.646672 eV Core-core repulsion = 24899.382017 eV Total energy + Delta-G solvation = -4140.264656 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.60924 -41.18096 -40.47615 -39.14805 -38.79529 -37.35666 -35.71697 -32.51577 -32.40300 -31.80632 -31.65324 -30.04351 -27.97020 -26.78584 -26.61071 -24.67010 -23.67186 -23.55561 -22.60672 -21.94385 -21.48781 -20.10001 -19.34892 -18.63026 -18.00944 -17.60453 -17.51046 -17.30963 -17.01004 -16.76181 -16.34649 -16.27222 -16.06904 -15.92776 -15.52078 -15.34191 -14.94892 -14.78423 -14.63199 -14.44428 -14.22115 -14.14889 -13.98919 -13.95365 -13.44671 -13.38592 -13.06625 -12.99800 -12.68947 -12.59920 -12.35090 -12.11444 -12.04487 -12.02801 -11.62264 -11.48881 -11.39339 -11.26832 -10.93492 -10.69180 -10.21996 -9.92730 -9.83617 -9.55207 -9.28860 -4.90976 0.20542 0.39182 0.42700 0.48311 1.27701 1.41565 1.49991 1.62174 1.97043 2.58918 2.66818 2.83342 3.39237 3.47154 3.56741 3.58473 3.65896 3.71641 3.86081 3.98548 4.00043 4.04297 4.06999 4.10780 4.13288 4.17247 4.25106 4.26214 4.29789 4.37640 4.46836 4.54655 4.60913 4.62212 4.64287 4.71870 4.82740 4.88621 4.93728 4.98546 5.07683 5.10836 5.14246 5.20132 5.24741 5.32366 5.37200 5.44867 5.49204 5.58183 5.62973 5.69554 5.77190 6.11768 6.26938 6.45523 6.45823 7.10406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.095 4.095 3 Si 0.786 3.214 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.113 3.887 9 O -0.325 6.325 10 C 0.039 3.961 11 C 0.509 3.491 12 O -0.578 6.578 13 N -0.705 5.705 14 C 0.131 3.869 15 C -0.107 4.107 16 H 0.122 0.878 17 C -0.122 4.122 18 C -0.073 4.073 19 H 0.111 0.889 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.126 4.126 27 C -0.150 4.150 28 H 0.386 0.614 29 H 0.119 0.881 30 H -0.276 1.276 31 H -0.305 1.305 32 H 0.150 0.850 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.422 0.578 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.010 1.967 -7.932 11.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.203 4.203 3 Si 0.690 3.310 4 C -0.083 4.083 5 C -0.174 4.174 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.238 6.238 10 C -0.039 4.039 11 C 0.295 3.705 12 O -0.457 6.457 13 N -0.360 5.360 14 C 0.008 3.992 15 C -0.126 4.126 16 H 0.140 0.860 17 C -0.160 4.160 18 C -0.091 4.091 19 H 0.129 0.871 20 C -0.078 4.078 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.163 4.163 27 C -0.169 4.169 28 H 0.235 0.765 29 H 0.137 0.863 30 H -0.203 1.203 31 H -0.234 1.234 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.179 0.821 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.270 1.996 -6.657 10.058 hybrid contribution -1.443 -0.529 -0.580 1.643 sum 5.826 1.467 -7.237 9.406 Atomic orbital electron populations 1.86580 1.18723 1.80560 1.50114 1.25488 0.83435 1.12914 0.98457 0.93890 0.89985 0.70626 0.76465 1.20137 0.97920 0.93175 0.97027 1.21221 1.00018 1.00940 0.95245 1.21341 0.97267 0.93443 0.96718 1.21640 1.02361 0.96906 1.01089 1.19210 0.95800 0.82885 0.95335 1.86126 1.71374 1.23394 1.42919 1.22730 1.02016 0.90492 0.88668 1.20607 0.79939 0.88160 0.81779 1.90769 1.39101 1.75596 1.40219 1.45666 1.53502 1.12328 1.24472 1.21378 0.98923 0.80490 0.98456 1.22726 1.01262 0.95805 0.92790 0.86040 1.23012 1.02327 0.95656 0.94999 1.21547 0.96006 0.95260 0.96280 0.87054 1.19958 0.94863 0.97001 0.95995 1.21195 0.92649 1.00340 1.00515 1.21415 0.99521 0.96850 0.97287 1.21431 0.98090 0.98898 0.97314 1.21453 0.92981 0.99971 1.00381 1.21356 0.99646 0.96661 0.97069 1.23176 0.99982 0.95892 0.97246 1.20287 1.03956 0.94965 0.97724 0.76469 0.86308 1.20257 1.23379 0.83314 0.81879 0.82115 0.85474 0.85752 0.73984 0.92608 0.92357 0.90543 0.90134 0.85597 0.85260 0.85067 0.84767 0.84673 0.89701 0.90366 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.23 12.76 -148.98 -1.90 -5.13 16 2 C -0.10 -0.18 2.82 71.24 0.20 0.02 16 3 Si 0.79 -1.46 29.79 68.60 2.04 0.58 16 4 C -0.08 -0.19 5.39 -19.88 -0.11 -0.30 16 5 C -0.16 0.35 8.67 22.29 0.19 0.54 16 6 C -0.07 0.31 10.04 22.25 0.22 0.54 16 7 C -0.20 0.56 9.04 22.37 0.20 0.76 16 8 C 0.11 0.52 6.69 22.51 0.15 0.67 16 9 O -0.32 -2.45 9.67 -73.44 -0.71 -3.16 16 10 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 11 C 0.51 1.76 7.91 87.66 0.69 2.45 16 12 O -0.58 -9.30 16.50 16.01 0.26 -9.04 16 13 N -0.71 3.13 5.56 -463.07 -2.57 0.56 16 14 C 0.13 -0.29 5.51 86.38 0.48 0.19 16 15 C -0.11 0.80 3.75 -10.27 -0.04 0.76 16 16 H 0.12 -1.36 8.14 -2.39 -0.02 -1.38 16 17 C -0.12 0.57 7.11 31.12 0.22 0.79 16 18 C -0.07 0.32 3.98 -11.01 -0.04 0.28 16 19 H 0.11 -0.74 8.09 -2.39 -0.02 -0.76 16 20 C -0.08 -0.03 5.29 -19.87 -0.11 -0.14 16 21 C -0.13 -0.23 8.60 22.27 0.19 -0.04 16 22 C -0.13 -0.34 10.05 22.27 0.22 -0.11 16 23 C -0.14 -0.31 10.05 22.27 0.22 -0.09 16 24 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 25 C -0.13 -0.10 9.71 22.27 0.22 0.11 16 26 C -0.13 0.78 7.00 31.12 0.22 1.00 16 27 C -0.15 -1.04 9.55 22.37 0.21 -0.83 16 28 H 0.39 -0.11 8.70 -74.05 -0.64 -0.75 16 29 H 0.12 0.16 7.96 -2.39 -0.02 0.14 16 30 H -0.28 -0.24 7.11 99.48 0.71 0.47 16 31 H -0.31 -1.89 7.11 99.48 0.71 -1.18 16 32 H 0.15 -1.01 4.87 -2.91 -0.01 -1.02 16 33 H 0.16 -1.78 8.06 -2.91 -0.02 -1.80 16 34 H 0.16 -1.59 6.30 -2.91 -0.02 -1.61 16 35 H 0.13 -1.21 7.66 -2.39 -0.02 -1.23 16 36 H 0.12 -1.14 7.66 -2.38 -0.02 -1.16 16 37 H 0.42 -5.29 8.47 -92.70 -0.79 -6.07 16 38 H 0.06 0.08 7.85 -2.38 -0.02 0.06 16 39 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.08 -0.15 7.67 -2.39 -0.02 -0.17 16 41 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.13 -0.02 6.68 -2.91 -0.02 -0.04 16 43 H 0.13 -0.02 8.06 -2.91 -0.02 -0.05 16 44 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 45 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 46 H 0.14 -0.40 8.05 -2.91 -0.02 -0.43 16 47 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 48 H 0.08 -0.29 6.08 -2.39 -0.01 -0.30 16 49 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -27.64 403.80 0.66 -26.98 By element: Atomic # 1 Polarization: -17.28 SS G_CDS: -0.41 Total: -17.70 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 3.95 Total: 6.90 kcal Atomic # 7 Polarization: 3.13 SS G_CDS: -2.57 Total: 0.56 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -2.35 Total: -17.33 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.04 Total: 0.58 kcal Total: -27.64 0.66 -26.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.124 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds