Wall clock time and date at job start Tue Mar 9 2021 13:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86309 * 109.46986 * 2 1 4 4 C 1.50706 * 109.47070 * 240.00216 * 2 1 3 5 5 C 1.34236 * 126.49820 * 105.02202 * 4 2 1 6 6 N 1.36829 * 109.93662 * 179.97438 * 5 4 2 7 7 C 1.46504 * 125.06386 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46852 * 265.02487 * 7 6 5 9 9 O 1.21280 * 120.00216 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00032 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00313 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47200 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.84364 * 316.19365 * 12 11 10 14 14 C 1.53771 * 113.61617 * 87.50198 * 12 11 10 15 15 C 1.53778 * 87.08409 * 139.97904 * 14 12 11 16 16 H 1.09000 * 113.69094 * 89.12206 * 15 14 12 17 17 C 1.50693 * 113.61778 * 220.01795 * 15 14 12 18 18 C 1.38233 * 120.00207 * 217.49163 * 17 15 14 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 15 20 20 C 1.38235 * 120.00220 * 0.28719 * 19 18 17 21 21 C 1.38237 * 119.99712 * 359.94731 * 20 19 18 22 22 C 1.38234 * 120.00048 * 0.02876 * 21 20 19 23 23 C 1.53774 * 113.61276 * 185.00075 * 12 11 10 24 24 C 1.37696 * 109.87550 * 0.22663 * 6 5 4 25 25 C 1.39084 * 133.50856 * 180.39224 * 24 6 5 26 26 C 1.37786 * 119.77463 * 179.64778 * 25 24 6 27 27 C 1.38787 * 120.66847 * 359.76586 * 26 25 24 28 28 C 1.36666 * 120.52604 * 359.97438 * 27 26 25 29 29 C 1.39584 * 119.76698 * 0.02562 * 28 27 26 30 30 H 0.96697 * 114.00673 * 60.00044 * 1 2 3 31 31 H 1.09000 * 109.47460 * 120.00281 * 2 1 3 32 32 H 1.48497 * 109.99777 * 60.00064 * 3 2 1 33 33 H 1.48496 * 110.00122 * 181.32228 * 3 2 1 34 34 H 1.08007 * 125.03219 * 359.97438 * 5 4 2 35 35 H 1.08994 * 109.47156 * 145.02614 * 7 6 5 36 36 H 1.09001 * 109.47200 * 25.02167 * 7 6 5 37 37 H 0.97003 * 120.00027 * 0.02562 * 10 8 7 38 38 H 1.08994 * 109.46976 * 59.99642 * 11 10 8 39 39 H 1.09001 * 109.46921 * 300.00077 * 11 10 8 40 40 H 1.09007 * 113.61480 * 25.43273 * 14 12 11 41 41 H 1.09001 * 113.61774 * 254.52908 * 14 12 11 42 42 H 1.08002 * 120.00157 * 0.02562 * 18 17 15 43 43 H 1.07999 * 120.00009 * 180.25939 * 19 18 17 44 44 H 1.07996 * 120.00471 * 179.97438 * 20 19 18 45 45 H 1.08001 * 119.99657 * 180.02562 * 21 20 19 46 46 H 1.08004 * 119.99526 * 179.97438 * 22 21 20 47 47 H 1.08998 * 113.61604 * 105.46631 * 23 12 11 48 48 H 1.09005 * 113.61393 * 334.56515 * 23 12 11 49 49 H 1.08001 * 120.11560 * 359.41088 * 25 24 6 50 50 H 1.08003 * 119.66761 * 179.77975 * 26 25 24 51 51 H 1.07999 * 119.73873 * 179.97438 * 27 26 25 52 52 H 1.08008 * 120.11156 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4611 -0.1375 -2.3228 6 7 2.8035 -1.0989 -3.2343 7 6 3.4082 -0.8402 -4.5434 8 6 2.3285 -0.7837 -5.5931 9 8 1.1682 -0.9442 -5.2789 10 7 2.6522 -0.5548 -6.8813 11 6 1.6027 -0.5004 -7.9019 12 6 2.2342 -0.2302 -9.2691 13 1 2.9992 0.5455 -9.2359 14 6 2.6783 -1.5050 -10.0053 15 6 2.1474 -0.8522 -11.2925 16 1 2.8886 -0.2472 -11.8146 17 6 1.4285 -1.8127 -12.2044 18 6 1.5676 -1.6998 -13.5751 19 6 0.9127 -2.5845 -14.4114 20 6 0.1140 -3.5783 -13.8772 21 6 -0.0289 -3.6881 -12.5067 22 6 0.6264 -2.8038 -11.6703 23 6 1.2053 -0.0329 -10.3947 24 6 2.4898 -2.3453 -2.7403 25 6 2.6294 -3.6360 -3.2393 26 6 2.2151 -4.7106 -2.4828 27 6 1.6634 -4.5193 -1.2238 28 6 1.5218 -3.2600 -0.7120 29 6 1.9348 -2.1570 -1.4611 30 1 -0.3934 0.4417 -0.7650 31 1 1.7923 -0.5139 0.8899 32 1 1.5614 2.4679 1.2085 33 1 3.5345 1.7704 -0.0322 34 1 2.5970 0.9249 -2.4616 35 1 4.1081 -1.6402 -4.7847 36 1 3.9392 0.1114 -4.5167 37 1 3.5803 -0.4268 -7.1327 38 1 0.9022 0.2989 -7.6604 39 1 1.0724 -1.4524 -7.9288 40 1 2.1256 -2.3962 -9.7077 41 1 3.7578 -1.6557 -10.0054 42 1 2.1917 -0.9235 -13.9925 43 1 1.0246 -2.4989 -15.4821 44 1 -0.3980 -4.2692 -14.5306 45 1 -0.6525 -4.4649 -12.0893 46 1 0.5144 -2.8895 -10.5995 47 1 1.0956 1.0050 -10.7090 48 1 0.2499 -0.5215 -10.2035 49 1 3.0575 -3.7953 -4.2179 50 1 2.3211 -5.7119 -2.8734 51 1 1.3433 -5.3723 -0.6439 52 1 1.0911 -3.1188 0.2684 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:25 Heat of formation + Delta-G solvation = 54.952490 kcal Electronic energy + Delta-G solvation = -32900.299671 eV Core-core repulsion = 28604.632167 eV Total energy + Delta-G solvation = -4295.667504 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.178 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.52352 -41.24611 -40.43941 -38.93177 -38.10167 -37.61047 -35.63180 -34.07527 -32.32579 -31.78256 -31.47410 -30.24229 -29.63022 -28.04844 -26.60653 -25.75433 -24.58872 -23.71107 -23.54169 -22.68053 -21.90170 -21.58073 -20.66164 -20.07898 -18.69976 -18.36646 -17.85969 -17.68316 -17.28985 -16.87207 -16.57270 -16.42389 -16.29857 -16.07984 -15.91642 -15.56641 -15.37310 -15.32844 -14.81790 -14.73495 -14.71955 -14.49651 -14.32621 -14.20822 -14.04566 -13.97345 -13.64490 -13.37443 -13.18167 -13.00997 -12.72981 -12.65883 -12.57372 -12.33085 -12.23632 -12.11848 -12.02656 -11.81358 -11.47711 -11.40494 -11.25134 -10.99084 -10.54632 -10.30074 -10.13288 -9.83138 -9.54497 -9.16308 -8.62826 -4.99347 0.13472 0.43313 0.48818 0.62560 1.37193 1.42413 1.51099 1.69580 1.71995 2.00520 2.25926 2.83851 2.93635 3.53253 3.59000 3.60650 3.63877 3.69801 3.71282 3.83224 3.88980 4.00050 4.04969 4.06241 4.11741 4.17520 4.18484 4.20770 4.27438 4.29533 4.32532 4.47329 4.49347 4.55477 4.62497 4.63239 4.71104 4.74853 4.78162 4.84239 4.87732 4.90399 4.96073 5.09631 5.12170 5.12399 5.15110 5.22537 5.38395 5.49350 5.51586 5.58820 5.63556 5.64773 5.72520 5.74866 5.78049 6.12307 6.20144 6.24031 6.52075 6.82384 7.18665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.047 4.047 3 Si 0.795 3.205 4 C -0.226 4.226 5 C 0.080 3.920 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.490 3.510 9 O -0.573 6.573 10 N -0.709 5.709 11 C 0.133 3.867 12 C -0.106 4.106 13 H 0.121 0.879 14 C -0.125 4.125 15 C -0.074 4.074 16 H 0.110 0.890 17 C -0.078 4.078 18 C -0.129 4.129 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.122 4.122 24 C 0.090 3.910 25 C -0.134 4.134 26 C -0.109 4.109 27 C -0.154 4.154 28 C -0.091 4.091 29 C -0.118 4.118 30 H 0.390 0.610 31 H 0.091 0.909 32 H -0.301 1.301 33 H -0.274 1.274 34 H 0.209 0.791 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.420 0.580 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.133 0.867 50 H 0.145 0.855 51 H 0.135 0.865 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.524 4.097 -7.451 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.156 4.156 3 Si 0.699 3.301 4 C -0.234 4.234 5 C -0.045 4.045 6 N -0.149 5.149 7 C -0.037 4.037 8 C 0.275 3.725 9 O -0.451 6.451 10 N -0.362 5.362 11 C 0.010 3.990 12 C -0.125 4.125 13 H 0.139 0.861 14 C -0.163 4.163 15 C -0.092 4.092 16 H 0.128 0.872 17 C -0.078 4.078 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.015 4.015 25 C -0.154 4.154 26 C -0.128 4.128 27 C -0.173 4.173 28 C -0.110 4.110 29 C -0.122 4.122 30 H 0.240 0.760 31 H 0.109 0.891 32 H -0.229 1.229 33 H -0.200 1.200 34 H 0.226 0.774 35 H 0.158 0.842 36 H 0.184 0.816 37 H 0.258 0.742 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.151 0.849 50 H 0.163 0.837 51 H 0.153 0.847 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.410 4.336 -6.582 10.160 hybrid contribution -0.152 -1.100 0.123 1.117 sum 6.259 3.236 -6.459 9.558 Atomic orbital electron populations 1.86437 1.18338 1.82436 1.49993 1.24709 0.84365 1.11061 0.95481 0.93979 0.77477 0.73511 0.85150 1.20805 1.11599 0.91860 0.99098 1.22086 0.99010 0.95298 0.88111 1.43466 1.53119 1.03773 1.14520 1.22000 0.93838 1.09159 0.78719 1.21413 0.90391 0.76211 0.84470 1.90808 1.22370 1.50178 1.81786 1.45812 1.12046 1.72345 1.06045 1.21294 0.90178 1.00938 0.86630 1.22709 0.99318 0.99304 0.91141 0.86095 1.23164 1.02027 0.96822 0.94256 1.21552 0.97951 0.95998 0.93676 0.87162 1.19968 0.97364 0.96375 0.94126 1.21352 1.00367 0.99791 0.93227 1.21452 0.97181 0.95410 1.00767 1.21428 0.99514 0.99160 0.95641 1.21418 0.99940 0.99652 0.94065 1.21186 0.97657 0.95644 1.00173 1.23001 0.97291 1.00897 0.94798 1.18394 1.01745 0.87130 0.94225 1.20252 1.04955 0.89158 1.01026 1.21122 0.98321 0.99067 0.94297 1.20907 1.02384 0.96983 0.97045 1.20442 0.99167 0.91858 0.99515 1.19381 1.03851 0.93988 0.95013 0.76027 0.89109 1.22904 1.20006 0.77415 0.84153 0.81617 0.74179 0.92347 0.93115 0.90471 0.89840 0.84711 0.84813 0.85100 0.85260 0.85597 0.90185 0.90650 0.84900 0.83716 0.84687 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.85 12.88 -148.98 -1.92 -5.77 16 2 C -0.05 -0.22 3.06 71.24 0.22 0.00 16 3 Si 0.79 -0.95 30.75 68.60 2.11 1.16 16 4 C -0.23 -1.38 5.58 -18.63 -0.10 -1.48 16 5 C 0.08 0.04 9.89 83.00 0.82 0.86 16 6 N -0.47 -0.69 2.27 -519.98 -1.18 -1.87 16 7 C 0.09 -0.68 6.48 85.63 0.56 -0.12 16 8 C 0.49 -0.92 7.90 87.66 0.69 -0.23 16 9 O -0.57 -5.81 16.42 -3.03 -0.05 -5.86 16 10 N -0.71 5.68 5.56 -463.06 -2.57 3.10 16 11 C 0.13 -0.63 5.51 86.38 0.48 -0.16 16 12 C -0.11 0.96 3.75 -10.27 -0.04 0.92 16 13 H 0.12 -1.54 8.14 -2.39 -0.02 -1.56 16 14 C -0.13 0.92 7.01 31.12 0.22 1.13 16 15 C -0.07 0.39 3.98 -11.02 -0.04 0.34 16 16 H 0.11 -0.81 8.09 -2.39 -0.02 -0.83 16 17 C -0.08 0.02 5.29 -19.87 -0.11 -0.09 16 18 C -0.13 -0.04 9.71 22.27 0.22 0.18 16 19 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 20 C -0.14 -0.25 10.05 22.27 0.22 -0.03 16 21 C -0.13 -0.26 10.05 22.27 0.22 -0.04 16 22 C -0.13 -0.15 8.60 22.27 0.19 0.04 16 23 C -0.12 0.71 7.11 31.12 0.22 0.93 16 24 C 0.09 0.70 6.80 39.03 0.27 0.97 16 25 C -0.13 -0.79 10.00 22.37 0.22 -0.57 16 26 C -0.11 -0.63 10.01 22.29 0.22 -0.41 16 27 C -0.15 -1.20 9.97 22.03 0.22 -0.98 16 28 C -0.09 -0.99 10.05 22.23 0.22 -0.77 16 29 C -0.12 -1.28 6.35 -20.20 -0.13 -1.41 16 30 H 0.39 -0.27 8.70 -74.06 -0.64 -0.91 16 31 H 0.09 0.65 7.96 -2.39 -0.02 0.63 16 32 H -0.30 -1.96 7.11 99.48 0.71 -1.25 16 33 H -0.27 -0.50 7.11 99.48 0.71 0.21 16 34 H 0.21 -1.79 6.35 -2.91 -0.02 -1.81 16 35 H 0.14 -1.72 8.14 -2.39 -0.02 -1.74 16 36 H 0.17 -2.73 8.12 -2.39 -0.02 -2.75 16 37 H 0.42 -6.46 8.47 -92.71 -0.79 -7.25 16 38 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.05 -0.02 7.84 -2.39 -0.02 -0.04 16 40 H 0.08 -0.36 6.07 -2.38 -0.01 -0.37 16 41 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.14 -0.46 8.05 -2.91 -0.02 -0.49 16 43 H 0.13 -0.31 8.06 -2.91 -0.02 -0.34 16 44 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 45 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 46 H 0.13 -0.11 6.67 -2.91 -0.02 -0.13 16 47 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 48 H 0.07 -0.23 7.67 -2.38 -0.02 -0.24 16 49 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 50 H 0.15 0.09 8.06 -2.91 -0.02 0.06 16 51 H 0.14 0.50 8.06 -2.91 -0.02 0.48 16 52 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -29.82 430.39 0.96 -28.86 By element: Atomic # 1 Polarization: -18.36 SS G_CDS: -0.45 Total: -18.81 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.02 Total: -0.82 kcal Atomic # 7 Polarization: 4.99 SS G_CDS: -3.75 Total: 1.24 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.97 Total: -11.63 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: 2.11 Total: 1.16 kcal Total: -29.82 0.96 -28.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.812 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds