Wall clock time and date at job start Tue Mar 9 2021 13:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46714 * 2 1 4 4 C 1.52999 * 109.47304 * 119.99737 * 2 1 3 5 5 C 1.53006 * 109.46626 * 65.00546 * 4 2 1 6 6 O 1.42906 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.42898 * 113.99821 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46985 * 30.00310 * 7 6 5 9 9 C 1.52991 * 109.47159 * 150.00189 * 7 6 5 10 10 C 1.53000 * 109.47603 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47145 * 300.00382 * 10 9 7 12 12 H 1.09003 * 109.46889 * 299.99525 * 11 10 9 13 13 N 1.46495 * 109.47554 * 179.97438 * 11 10 9 14 14 C 1.34777 * 120.00129 * 154.99702 * 13 11 10 15 15 O 1.21571 * 119.99832 * 359.97438 * 14 13 11 16 16 C 1.47708 * 120.00105 * 180.02562 * 14 13 11 17 17 N 1.31815 * 126.51893 * 359.68827 * 16 14 13 18 18 N 1.28466 * 110.07463 * 179.82216 * 17 16 14 19 19 C 1.46493 * 124.88431 * 180.20030 * 18 17 16 20 20 C 1.35037 * 110.23076 * 0.45308 * 18 17 16 21 21 C 1.50698 * 126.38457 * 179.70236 * 20 18 17 22 22 O 1.42898 * 109.46947 * 30.00660 * 21 20 18 23 23 Si 1.86300 * 109.46774 * 150.00051 * 21 20 18 24 24 C 1.35367 * 107.22670 * 359.72720 * 20 18 17 25 25 C 1.53004 * 109.47371 * 59.99427 * 11 10 9 26 26 C 1.52999 * 109.47444 * 270.00482 * 7 6 5 27 27 H 1.08998 * 109.47381 * 60.00361 * 1 2 3 28 28 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47430 * 299.99351 * 1 2 3 30 30 H 1.08993 * 109.47092 * 240.00621 * 2 1 3 31 31 H 1.08999 * 109.47112 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46851 * 300.00487 * 3 2 1 33 33 H 1.09001 * 109.46642 * 60.00167 * 3 2 1 34 34 H 1.08993 * 109.47839 * 305.00615 * 4 2 1 35 35 H 1.09000 * 109.47160 * 185.00177 * 4 2 1 36 36 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 37 37 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 38 38 H 1.08997 * 109.47578 * 300.00291 * 9 7 6 39 39 H 1.09003 * 109.47073 * 60.00175 * 9 7 6 40 40 H 1.09003 * 109.46840 * 59.99938 * 10 9 7 41 41 H 1.09001 * 109.47364 * 179.97438 * 10 9 7 42 42 H 0.97001 * 120.00181 * 335.00548 * 13 11 10 43 43 H 1.08998 * 109.47502 * 270.29019 * 19 18 17 44 44 H 1.09000 * 109.47322 * 30.29182 * 19 18 17 45 45 H 1.08999 * 109.47338 * 150.28937 * 19 18 17 46 46 H 1.08996 * 109.47234 * 269.99808 * 21 20 18 47 47 H 0.96695 * 114.00232 * 59.99621 * 22 21 20 48 48 H 1.48501 * 110.00047 * 58.68319 * 23 21 20 49 49 H 1.48501 * 110.00075 * 179.97438 * 23 21 20 50 50 H 1.08004 * 127.24818 * 179.97438 * 24 20 18 51 51 H 1.09003 * 109.47033 * 60.00187 * 25 11 10 52 52 H 1.08997 * 109.47297 * 180.02562 * 25 11 10 53 53 H 1.09003 * 109.46889 * 299.99886 * 26 7 6 54 54 H 1.09004 * 109.47118 * 59.99436 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 8 2.1123 -2.8692 2.3544 7 6 1.7855 -4.2597 2.3969 8 1 1.7256 -4.6500 1.3809 9 6 2.8683 -5.0147 3.1703 10 6 2.5189 -6.5035 3.2152 11 6 1.1700 -6.6900 3.9129 12 1 1.2296 -6.2999 4.9290 13 7 0.8351 -8.1155 3.9555 14 6 0.0077 -8.5851 4.9101 15 8 -0.4603 -7.8258 5.7362 16 6 -0.3296 -10.0225 4.9534 17 7 0.0980 -10.9539 4.1244 18 7 -0.3887 -12.0958 4.4552 19 6 -0.1213 -13.3549 3.7557 20 6 -1.1865 -11.9677 5.5371 21 6 -1.9453 -13.0736 6.2242 22 8 -1.2335 -14.3037 6.0752 23 14 -2.1214 -12.6737 8.0352 24 6 -1.1781 -10.6606 5.8889 25 6 0.0871 -5.9350 3.1395 26 6 0.4368 -4.4456 3.0949 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4427 0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6055 -0.2618 2.1370 35 1 3.1264 -0.6442 1.2951 36 1 0.5491 -2.2724 1.1420 37 1 2.0700 -2.6549 0.3001 38 1 3.8292 -4.8823 2.6730 39 1 2.9282 -4.6243 4.1862 40 1 2.4593 -6.8936 2.1991 41 1 3.2906 -7.0415 3.7659 42 1 1.2088 -8.7214 3.2967 43 1 -0.8609 -13.4970 2.9677 44 1 0.8757 -13.3220 3.3165 45 1 -0.1799 -14.1827 4.4624 46 1 -2.9340 -13.1692 5.7755 47 1 -0.3433 -14.2912 6.4525 48 1 -2.8321 -11.3806 8.2030 49 1 -2.8686 -13.7564 8.7242 50 1 -1.7078 -10.2013 6.7105 51 1 0.0275 -6.3250 2.1233 52 1 -0.8738 -6.0674 3.6367 53 1 0.4966 -4.0553 4.1109 54 1 -0.3347 -3.9077 2.5439 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12222500_13259642.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:56 Heat of formation + Delta-G solvation = -53.732860 kcal Electronic energy + Delta-G solvation = -31242.196235 eV Core-core repulsion = 26988.677804 eV Total energy + Delta-G solvation = -4253.518431 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.87460 -41.10098 -39.91811 -38.27936 -38.09587 -36.91613 -34.86905 -34.31078 -32.65495 -31.90562 -30.83868 -29.40854 -28.24538 -28.05403 -26.72130 -24.68682 -24.27041 -23.61110 -22.76189 -22.20356 -21.39316 -20.94564 -20.57879 -19.13040 -17.82318 -17.61995 -17.56907 -17.41175 -16.98940 -16.82009 -16.46552 -16.03659 -15.76407 -15.72075 -15.56462 -15.28283 -15.06653 -14.89896 -14.85783 -14.77690 -14.19823 -14.01506 -13.74012 -13.59259 -13.57894 -13.44604 -13.26889 -13.10116 -12.95660 -12.65148 -12.59681 -12.39623 -12.36098 -12.23465 -12.18374 -11.87442 -11.74914 -11.65651 -11.54104 -11.45314 -11.40143 -11.28679 -10.87443 -10.45395 -10.29796 -10.03518 -9.98915 -4.98092 0.40912 0.77709 1.17297 1.54046 1.69827 1.95823 2.05545 2.25817 2.63020 3.11766 3.31042 3.32040 3.57430 3.65199 3.87495 3.90692 3.97433 4.01629 4.03238 4.10603 4.17100 4.24607 4.28226 4.30675 4.32900 4.37822 4.38465 4.41648 4.45217 4.50290 4.52705 4.57969 4.61962 4.71257 4.76661 4.79495 4.80951 4.89779 4.93472 4.98271 4.99893 5.06396 5.08441 5.08905 5.11353 5.18065 5.23965 5.26498 5.29873 5.40705 5.43006 5.46194 5.66094 6.31520 6.35351 6.52312 6.79741 7.08710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.111 4.111 5 C 0.058 3.942 6 O -0.401 6.401 7 C 0.089 3.911 8 H 0.074 0.926 9 C -0.109 4.109 10 C -0.112 4.112 11 C 0.144 3.856 12 H 0.072 0.928 13 N -0.701 5.701 14 C 0.604 3.396 15 O -0.570 6.570 16 C -0.038 4.038 17 N -0.259 5.259 18 N -0.257 5.257 19 C 0.062 3.938 20 C -0.007 4.007 21 C -0.034 4.034 22 O -0.541 6.541 23 Si 0.789 3.211 24 C -0.198 4.198 25 C -0.120 4.120 26 C -0.133 4.133 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.416 0.584 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.139 0.861 46 H 0.128 0.872 47 H 0.400 0.600 48 H -0.293 1.293 49 H -0.279 1.279 50 H 0.159 0.841 51 H 0.078 0.922 52 H 0.050 0.950 53 H 0.060 0.940 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -5.648 -3.545 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.018 4.018 6 O -0.321 6.321 7 C 0.032 3.968 8 H 0.092 0.908 9 C -0.148 4.148 10 C -0.150 4.150 11 C 0.040 3.960 12 H 0.090 0.910 13 N -0.352 5.352 14 C 0.389 3.611 15 O -0.447 6.447 16 C -0.196 4.196 17 N -0.097 5.097 18 N -0.046 5.046 19 C -0.076 4.076 20 C -0.132 4.132 21 C -0.145 4.145 22 O -0.349 6.349 23 Si 0.693 3.307 24 C -0.226 4.226 25 C -0.159 4.159 26 C -0.171 4.171 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.253 0.747 43 H 0.107 0.893 44 H 0.125 0.875 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.251 0.749 48 H -0.220 1.220 49 H -0.206 1.206 50 H 0.176 0.824 51 H 0.097 0.903 52 H 0.069 0.931 53 H 0.079 0.921 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.950 -5.325 -3.472 7.008 hybrid contribution -1.075 0.147 -0.292 1.124 sum 1.875 -5.178 -3.765 6.671 Atomic orbital electron populations 1.21936 0.95020 1.01957 1.02042 1.21042 0.96059 0.96487 0.97482 1.21838 1.01182 0.95471 1.02060 1.21558 1.01564 0.93145 0.98597 1.22713 0.98461 0.93170 0.87445 1.87892 1.78460 1.22223 1.43499 1.22201 0.93893 0.81293 0.99420 0.90840 1.21492 0.98516 0.93529 1.01224 1.21704 0.94918 0.96244 1.02169 1.21086 0.95150 0.79389 1.00366 0.90983 1.45819 1.47631 1.10234 1.31519 1.17076 0.78321 0.84913 0.80798 1.90791 1.54580 1.58056 1.41284 1.21739 1.05172 0.93823 0.98900 1.73468 1.21229 0.91673 1.23361 1.45740 1.31258 1.07439 1.20186 1.22972 1.04804 0.80136 0.99686 1.22082 1.00811 0.97059 0.93276 1.24803 0.96315 0.82296 1.11074 1.86447 1.34017 1.31796 1.82610 0.93171 0.88198 0.76285 0.73047 1.21615 1.04568 0.92626 1.03808 1.21807 0.98290 0.94722 1.01056 1.21937 0.97785 0.95743 1.01664 0.92172 0.92413 0.92902 0.90589 0.92433 0.92087 0.92834 0.91996 0.91463 0.92867 0.92578 0.89760 0.91659 0.89283 0.89526 0.74704 0.89342 0.87504 0.84360 0.85516 0.74853 1.22010 1.20583 0.82356 0.90292 0.93131 0.92141 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.14 8.95 71.98 0.64 0.78 16 2 C -0.09 0.07 2.92 -10.79 -0.03 0.04 16 3 C -0.15 0.13 9.19 71.99 0.66 0.79 16 4 C -0.11 -0.13 5.05 30.60 0.15 0.02 16 5 C 0.06 0.08 5.50 71.98 0.40 0.47 16 6 O -0.40 -1.97 9.99 -148.98 -1.49 -3.46 16 7 C 0.09 0.10 2.61 30.59 0.08 0.18 16 8 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 9 C -0.11 0.07 5.57 30.59 0.17 0.24 16 10 C -0.11 0.33 5.39 30.59 0.16 0.50 16 11 C 0.14 0.34 2.45 44.99 0.11 0.45 16 12 H 0.07 0.52 7.58 -2.39 -0.02 0.50 16 13 N -0.70 -2.31 5.07 -445.53 -2.26 -4.57 16 14 C 0.60 5.95 7.79 86.75 0.68 6.62 16 15 O -0.57 -9.73 16.59 -3.94 -0.07 -9.80 16 16 C -0.04 -0.29 7.13 42.46 0.30 0.01 16 17 N -0.26 -1.05 11.67 -48.17 -0.56 -1.61 16 18 N -0.26 0.07 3.70 -355.94 -1.32 -1.24 16 19 C 0.06 -0.49 11.00 127.77 1.41 0.91 16 20 C -0.01 0.00 6.18 41.40 0.26 0.25 16 21 C -0.03 0.15 2.99 71.24 0.21 0.36 16 22 O -0.54 4.27 10.02 -148.98 -1.49 2.77 16 23 Si 0.79 -2.88 31.37 68.60 2.15 -0.73 16 24 C -0.20 -1.12 9.35 22.41 0.21 -0.91 16 25 C -0.12 -0.33 5.50 30.61 0.17 -0.16 16 26 C -0.13 -0.35 5.54 30.61 0.17 -0.18 16 27 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.06 -0.08 6.56 -2.38 -0.02 -0.09 16 29 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.05 0.03 6.29 -2.39 -0.02 0.02 16 37 H 0.06 -0.03 8.09 -2.39 -0.02 -0.05 16 38 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.42 -0.34 8.33 -92.71 -0.77 -1.11 16 43 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.11 -1.08 8.14 -2.39 -0.02 -1.10 16 45 H 0.14 -1.60 5.00 -2.39 -0.01 -1.61 16 46 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 47 H 0.40 -6.15 8.39 -74.06 -0.62 -6.77 16 48 H -0.29 -1.09 6.83 99.48 0.68 -0.41 16 49 H -0.28 -0.47 7.11 99.48 0.71 0.24 16 50 H 0.16 1.00 6.84 -2.91 -0.02 0.98 16 51 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 52 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 53 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 54 H 0.07 0.16 7.87 -2.39 -0.02 0.14 16 Total: 0.00 -19.70 424.58 0.22 -19.47 By element: Atomic # 1 Polarization: -10.74 SS G_CDS: -0.49 Total: -11.23 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 5.75 Total: 10.39 kcal Atomic # 7 Polarization: -3.29 SS G_CDS: -4.14 Total: -7.42 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -3.05 Total: -10.48 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: 2.15 Total: -0.73 kcal Total: -19.70 0.22 -19.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12222500_13259642.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.261 kcal (2) G-P(sol) polarization free energy of solvation -19.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds