Wall clock time and date at job start Tue Mar 9 2021 13:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.46873 * 2 1 4 4 C 1.50699 * 109.46972 * 120.00078 * 2 1 3 5 5 C 1.35008 * 126.42194 * 210.02319 * 4 2 1 6 6 N 1.33588 * 108.65100 * 179.97438 * 5 4 2 7 7 C 1.32415 * 109.22349 * 0.02562 * 6 5 4 8 8 C 1.41252 * 132.11472 * 180.02562 * 7 6 5 9 9 Br 1.89104 * 120.25522 * 359.95367 * 8 7 6 10 10 C 1.35702 * 119.49010 * 179.97438 * 8 7 6 11 11 C 1.41758 * 119.53015 * 0.28056 * 10 8 7 12 12 C 1.47577 * 120.00756 * 179.72180 * 11 10 8 13 13 O 1.21591 * 119.99809 * 180.02562 * 12 11 10 14 14 N 1.34778 * 119.99895 * 359.97438 * 12 11 10 15 15 C 1.46505 * 119.99649 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46836 * 180.02562 * 15 14 12 17 17 H 1.09003 * 112.85057 * 45.33436 * 16 15 14 18 18 C 1.53780 * 113.61236 * 176.52882 * 16 15 14 19 19 C 1.53782 * 87.08112 * 139.98235 * 18 16 15 20 20 H 1.09003 * 113.61464 * 89.11285 * 19 18 16 21 21 O 1.42900 * 113.61750 * 219.93690 * 19 18 16 22 22 C 1.53777 * 113.61651 * 274.13589 * 16 15 14 23 23 C 1.36502 * 119.98337 * 359.43520 * 11 10 8 24 24 N 1.35947 * 120.50065 * 0.56499 * 23 11 10 25 25 H 0.96697 * 114.00605 * 60.00574 * 1 2 3 26 26 H 1.08996 * 109.46639 * 240.00144 * 2 1 3 27 27 H 1.48503 * 109.99948 * 298.68302 * 3 2 1 28 28 H 1.48502 * 109.99891 * 59.99991 * 3 2 1 29 29 H 1.07999 * 125.67753 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.23154 * 179.97438 * 10 8 7 31 31 H 0.96997 * 120.00113 * 0.02562 * 14 12 11 32 32 H 1.09002 * 109.47253 * 300.00286 * 15 14 12 33 33 H 1.08999 * 109.47026 * 60.00049 * 15 14 12 34 34 H 1.09000 * 113.61763 * 254.52863 * 18 16 15 35 35 H 1.08994 * 113.61613 * 25.43457 * 18 16 15 36 36 H 0.96697 * 114.00305 * 179.97438 * 21 19 18 37 37 H 1.09000 * 113.61361 * 334.57457 * 22 16 15 38 38 H 1.09001 * 113.61451 * 105.47157 * 22 16 15 39 39 H 1.07999 * 119.74923 * 180.25782 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 3.0853 -0.4608 1.8852 6 7 3.1762 -1.2957 2.9241 7 6 2.1069 -2.0762 2.9511 8 6 1.7123 -3.1124 3.8262 9 35 2.8124 -3.5975 5.2858 10 6 0.5379 -3.7574 3.6112 11 6 -0.2718 -3.3856 2.5086 12 6 -1.5480 -4.0841 2.2614 13 8 -2.2422 -3.7654 1.3153 14 7 -1.9436 -5.0760 3.0836 15 6 -3.2109 -5.7691 2.8384 16 6 -3.4209 -6.8418 3.9090 17 1 -3.2051 -6.4832 4.9155 18 6 -4.7681 -7.5739 3.7914 19 6 -4.0084 -8.8638 4.1433 20 1 -3.9526 -9.0593 5.2142 21 8 -4.4354 -10.0025 3.3928 22 6 -2.7489 -8.1842 3.5760 23 6 0.1265 -2.3774 1.6791 24 7 1.3029 -1.7309 1.8942 25 1 -0.3934 0.4416 -0.7650 26 1 1.7922 -0.5138 -0.8900 27 1 1.5877 2.4586 -1.2242 28 1 1.5614 2.4679 1.2085 29 1 3.8138 0.2890 1.6142 30 1 0.2247 -4.5517 4.2726 31 1 -1.3897 -5.3305 3.8381 32 1 -4.0308 -5.0518 2.8775 33 1 -3.1845 -6.2374 1.8545 34 1 -5.4948 -7.2752 4.5470 35 1 -5.1799 -7.5712 2.7823 36 1 -3.9610 -10.8167 3.6094 37 1 -2.6075 -8.3487 2.5078 38 1 -1.8477 -8.3776 4.1579 39 1 -0.4953 -2.0944 0.8426 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12309068_12335884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:05 Heat of formation + Delta-G solvation = 9.263978 kcal Electronic energy + Delta-G solvation = -26200.542771 eV Core-core repulsion = 22158.485378 eV Total energy + Delta-G solvation = -4042.057393 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.036 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.25284 -41.32764 -40.20145 -38.50686 -38.04576 -36.68727 -35.51909 -35.01313 -32.68661 -31.93522 -30.29852 -29.04791 -26.89493 -26.70634 -25.46056 -24.08308 -23.29827 -22.50044 -21.90953 -20.53077 -19.24574 -18.95030 -18.77892 -18.21282 -17.89755 -17.47005 -17.13966 -16.64916 -16.26112 -16.21047 -16.08012 -15.64659 -15.53692 -15.03087 -14.90695 -14.69338 -14.60120 -14.12167 -13.63925 -13.42771 -13.41344 -13.33713 -13.02041 -12.88397 -12.65430 -12.44265 -12.16716 -11.86684 -11.60568 -11.50279 -11.37329 -11.32668 -11.27167 -10.91760 -10.70255 -10.32841 -10.00079 -9.05806 -4.95179 -0.91315 -0.39054 0.17797 0.94375 1.16423 1.38627 1.63481 1.77948 1.92127 1.99326 2.20542 2.77075 2.94375 3.13953 3.29416 3.36300 3.39822 3.51609 3.53707 3.61391 3.81940 3.92707 4.00660 4.11531 4.21962 4.29402 4.30814 4.35375 4.44567 4.49011 4.64865 4.78336 4.82285 4.84923 4.96316 5.01501 5.11626 5.23459 5.30431 5.45229 5.55664 6.26372 6.40789 6.46872 6.90384 6.92673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.056 4.056 3 Si 0.810 3.190 4 C -0.052 4.052 5 C 0.041 3.959 6 N -0.490 5.490 7 C 0.221 3.779 8 C -0.080 4.080 9 Br 0.009 6.991 10 C -0.025 4.025 11 C -0.174 4.174 12 C 0.577 3.423 13 O -0.570 6.570 14 N -0.702 5.702 15 C 0.133 3.867 16 C -0.110 4.110 17 H 0.125 0.875 18 C -0.128 4.128 19 C 0.071 3.929 20 H 0.101 0.899 21 O -0.586 6.586 22 C -0.161 4.161 23 C 0.164 3.836 24 N -0.360 5.360 25 H 0.406 0.594 26 H 0.109 0.891 27 H -0.272 1.272 28 H -0.307 1.307 29 H 0.231 0.769 30 H 0.188 0.812 31 H 0.417 0.583 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.394 0.606 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -1.854 0.666 2.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.164 4.164 3 Si 0.712 3.288 4 C -0.163 4.163 5 C -0.108 4.108 6 N -0.209 5.209 7 C -0.024 4.024 8 C -0.163 4.163 9 Br 0.095 6.905 10 C -0.051 4.051 11 C -0.181 4.181 12 C 0.363 3.637 13 O -0.450 6.450 14 N -0.354 5.354 15 C 0.010 3.990 16 C -0.129 4.129 17 H 0.143 0.857 18 C -0.167 4.167 19 C 0.012 3.988 20 H 0.119 0.881 21 O -0.394 6.394 22 C -0.199 4.199 23 C 0.038 3.962 24 N -0.033 5.033 25 H 0.259 0.741 26 H 0.127 0.873 27 H -0.197 1.197 28 H -0.235 1.235 29 H 0.247 0.753 30 H 0.205 0.795 31 H 0.255 0.745 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.244 0.756 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.881 -0.851 1.330 2.456 hybrid contribution -1.568 -0.478 -0.928 1.884 sum 0.313 -1.329 0.401 1.424 Atomic orbital electron populations 1.86440 1.18177 1.81107 1.51989 1.24810 0.84338 1.12302 0.94901 0.93592 0.89398 0.69053 0.76791 1.21468 0.97513 0.95740 1.01555 1.22987 0.96601 1.00218 0.90972 1.70841 1.19976 1.08059 1.21992 1.20743 0.90166 1.00171 0.91369 1.20578 0.98494 0.99224 0.97970 1.96828 1.66598 1.90468 1.36650 1.21350 0.90176 0.98149 0.95408 1.19252 0.98483 1.01039 0.99347 1.17574 0.84017 0.79906 0.82204 1.90836 1.56216 1.66570 1.31415 1.45680 1.23873 1.35060 1.30806 1.21400 0.84745 0.94083 0.98815 1.22542 0.97335 0.93089 0.99934 0.85747 1.23087 0.96665 0.93829 1.03070 1.23513 0.94685 0.84990 0.95620 0.88117 1.86496 1.65836 1.21015 1.66061 1.23772 0.98708 0.95333 1.02101 1.22156 0.85090 0.89912 0.99079 1.42724 1.14966 1.24332 1.21263 0.74141 0.87337 1.19744 1.23504 0.75294 0.79527 0.74489 0.91443 0.92030 0.89604 0.90377 0.75580 0.90472 0.89213 0.79694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.09 10.88 -148.98 -1.62 -1.53 16 2 C -0.06 0.15 3.05 71.24 0.22 0.37 16 3 Si 0.81 -4.10 31.18 68.60 2.14 -1.96 16 4 C -0.05 -0.17 6.28 41.01 0.26 0.08 16 5 C 0.04 0.11 10.44 83.68 0.87 0.98 16 6 N -0.49 -4.30 11.30 -194.10 -2.19 -6.49 16 7 C 0.22 1.76 7.59 134.19 1.02 2.78 16 8 C -0.08 -0.31 6.24 22.42 0.14 -0.17 16 9 Br 0.01 0.02 33.72 -20.37 -0.69 -0.66 16 10 C -0.03 0.03 9.26 22.55 0.21 0.24 16 11 C -0.17 -0.41 5.84 -20.35 -0.12 -0.53 16 12 C 0.58 2.05 7.76 86.71 0.67 2.72 16 13 O -0.57 -6.62 16.27 -4.00 -0.07 -6.68 16 14 N -0.70 2.35 5.51 -466.21 -2.57 -0.22 16 15 C 0.13 -0.33 5.50 86.38 0.47 0.15 16 16 C -0.11 0.77 3.75 -10.27 -0.04 0.73 16 17 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 18 C -0.13 0.45 7.47 31.12 0.23 0.69 16 19 C 0.07 -0.30 5.21 31.18 0.16 -0.14 16 20 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 21 O -0.59 -0.04 13.68 -148.98 -2.04 -2.08 16 22 C -0.16 1.00 7.48 31.18 0.23 1.23 16 23 C 0.16 0.89 9.91 83.65 0.83 1.72 16 24 N -0.36 -2.37 2.93 -337.71 -0.99 -3.36 16 25 H 0.41 -3.43 8.74 -74.06 -0.65 -4.08 16 26 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 27 H -0.27 0.55 7.11 99.48 0.71 1.25 16 28 H -0.31 -1.41 7.11 99.48 0.71 -0.71 16 29 H 0.23 -1.52 6.90 -2.91 -0.02 -1.54 16 30 H 0.19 -1.72 6.44 -2.91 -0.02 -1.74 16 31 H 0.42 -4.07 6.51 -92.71 -0.60 -4.67 16 32 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.06 0.06 7.88 -2.39 -0.02 0.04 16 34 H 0.09 -0.43 8.14 -2.39 -0.02 -0.44 16 35 H 0.08 0.00 8.10 -2.39 -0.02 -0.02 16 36 H 0.39 -3.14 9.12 -74.06 -0.68 -3.81 16 37 H 0.08 -0.19 7.92 -2.39 -0.02 -0.21 16 38 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 39 H 0.19 1.12 6.19 -2.91 -0.02 1.10 16 Total: 0.00 -27.27 351.93 -3.60 -30.87 By element: Atomic # 1 Polarization: -17.99 SS G_CDS: -0.74 Total: -18.73 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 5.16 Total: 10.84 kcal Atomic # 7 Polarization: -4.32 SS G_CDS: -5.75 Total: -10.07 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -3.72 Total: -10.29 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.14 Total: -1.96 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.66 kcal Total: -27.27 -3.60 -30.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12309068_12335884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.134 kcal (2) G-P(sol) polarization free energy of solvation -27.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds