Wall clock time and date at job start Tue Mar 9 2021 13:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47175 * 156.78686 * 3 2 1 5 5 C 1.53005 * 109.47227 * 276.78865 * 3 2 1 6 6 C 1.53000 * 109.46950 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47072 * 299.99353 * 6 5 3 8 8 H 1.08997 * 109.47451 * 300.00983 * 7 6 5 9 9 N 1.46494 * 109.46982 * 180.02562 * 7 6 5 10 10 C 1.34784 * 119.99635 * 155.00372 * 9 7 6 11 11 O 1.21565 * 119.99932 * 0.02562 * 10 9 7 12 12 C 1.47710 * 119.99987 * 179.97438 * 10 9 7 13 13 N 1.31818 * 126.51645 * 359.69016 * 12 10 9 14 14 N 1.28465 * 110.07241 * 179.85594 * 13 12 10 15 15 C 1.46496 * 124.88513 * 180.13263 * 14 13 12 16 16 C 1.35032 * 110.23046 * 0.41606 * 14 13 12 17 17 C 1.50702 * 126.39036 * 179.73163 * 16 14 13 18 18 O 1.42906 * 109.46404 * 329.99995 * 17 16 14 19 19 Si 1.86297 * 109.47299 * 210.00081 * 17 16 14 20 20 C 1.35365 * 107.23207 * 359.75024 * 16 14 13 21 21 C 1.53005 * 109.46705 * 60.00497 * 7 6 5 22 22 C 1.52995 * 109.47222 * 36.78673 * 3 2 1 23 23 H 4.18743 * 15.03801 * 0.02562 * 4 2 1 24 24 H 1.08990 * 109.47083 * 60.00206 * 5 3 2 25 25 H 1.09006 * 109.46819 * 299.99854 * 5 3 2 26 26 H 1.09002 * 109.46694 * 180.02562 * 6 5 3 27 27 H 1.08996 * 109.47332 * 59.99510 * 6 5 3 28 28 H 0.96995 * 120.00292 * 335.27805 * 9 7 6 29 29 H 1.08998 * 109.46992 * 270.32530 * 15 14 13 30 30 H 1.08995 * 109.47560 * 30.32554 * 15 14 13 31 31 H 1.09006 * 109.47205 * 150.32846 * 15 14 13 32 32 H 1.08997 * 109.47397 * 89.99396 * 17 16 14 33 33 H 0.96705 * 113.99881 * 180.02562 * 18 17 16 34 34 H 1.48497 * 110.00116 * 298.67555 * 19 17 16 35 35 H 1.48496 * 110.00057 * 59.99978 * 19 17 16 36 36 H 1.07999 * 127.25618 * 180.02562 * 20 16 14 37 37 H 1.08996 * 109.47503 * 59.99963 * 21 7 6 38 38 H 1.08997 * 109.47041 * 180.02562 * 21 7 6 39 39 H 1.08995 * 109.47831 * 299.99788 * 22 3 2 40 40 H 1.09001 * 109.47451 * 60.00250 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0089 0.9453 -0.4051 5 6 3.1561 -0.1696 1.4324 6 6 4.6861 -0.1683 1.4324 7 6 5.1971 -1.3231 0.5685 8 1 4.8344 -2.2679 0.9733 9 7 6.6620 -1.3222 0.5690 10 6 7.3367 -2.4644 0.3305 11 8 6.7295 -3.4951 0.1145 12 6 8.8137 -2.4634 0.3304 13 7 9.5975 -1.4247 0.5412 14 7 10.8298 -1.7809 0.4718 15 6 11.9730 -0.8838 0.6576 16 6 10.9198 -3.0998 0.1967 17 6 12.1899 -3.8937 0.0302 18 8 13.2188 -3.0443 -0.4817 19 14 11.8938 -5.2967 -1.1591 20 6 9.6566 -3.5760 0.0980 21 6 4.6869 -1.1528 -0.8639 22 6 3.1565 -1.1543 -0.8638 23 1 -1.0501 -0.0008 0.0009 24 1 2.7932 -1.1142 1.8374 25 1 2.7923 0.6533 2.0478 26 1 5.0494 -0.2901 2.4529 27 1 5.0486 0.7765 1.0275 28 1 7.1464 -0.5005 0.7449 29 1 12.2554 -0.4516 -0.3024 30 1 11.7006 -0.0864 1.3489 31 1 12.8137 -1.4460 1.0643 32 1 12.4970 -4.2948 0.9961 33 1 14.0668 -3.4898 -0.6146 34 1 10.8483 -6.2049 -0.6232 35 1 11.4747 -4.7630 -2.4799 36 1 9.3553 -4.5914 -0.1131 37 1 5.0495 -0.2080 -1.2689 38 1 5.0506 -1.9757 -1.4793 39 1 2.7937 -2.0990 -0.4588 40 1 2.7931 -1.0331 -1.8843 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12865462_13259642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:01 Heat of formation + Delta-G solvation = 57.874296 kcal Electronic energy + Delta-G solvation = -22702.695634 eV Core-core repulsion = 19293.934859 eV Total energy + Delta-G solvation = -3408.760775 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.96758 -41.11234 -39.39280 -37.89087 -35.98498 -34.58161 -33.59262 -32.80574 -31.90422 -30.31330 -28.44293 -26.77739 -25.03396 -23.83387 -23.35263 -22.24279 -21.40641 -20.65482 -19.06934 -18.68807 -18.38850 -17.68590 -17.48910 -17.35018 -16.29602 -15.98921 -15.78494 -15.62341 -15.29843 -15.24437 -15.11117 -14.84043 -14.16929 -14.03965 -13.91472 -13.67522 -13.45152 -13.30295 -13.01229 -12.82686 -12.39943 -12.21959 -12.17758 -12.10875 -11.99095 -11.68962 -11.41807 -10.99843 -10.95468 -10.93685 -10.41080 -10.13514 -9.95288 -5.03346 0.29872 0.65516 1.18256 1.51856 1.66495 1.84463 1.87595 1.97474 2.04677 2.14366 3.02212 3.11445 3.36863 3.51843 3.57903 3.68165 3.91266 4.02529 4.10881 4.17495 4.22351 4.30114 4.31405 4.35248 4.37900 4.41273 4.42696 4.48105 4.63071 4.68281 4.69632 4.93631 4.99588 5.03107 5.06051 5.07625 5.17840 5.23896 5.29230 5.39753 5.56846 6.27201 6.67668 6.67947 6.83081 6.99227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.210 4.210 3 C 0.020 3.980 4 H 0.105 0.895 5 C -0.102 4.102 6 C -0.116 4.116 7 C 0.143 3.857 8 H 0.071 0.929 9 N -0.699 5.699 10 C 0.604 3.396 11 O -0.570 6.570 12 C -0.036 4.036 13 N -0.259 5.259 14 N -0.257 5.257 15 C 0.086 3.914 16 C 0.029 3.971 17 C -0.043 4.043 18 O -0.558 6.558 19 Si 0.810 3.190 20 C -0.219 4.219 21 C -0.123 4.123 22 C -0.102 4.102 23 H 0.239 0.761 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.416 0.584 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.415 0.585 34 H -0.294 1.294 35 H -0.312 1.312 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 2.433 2.019 8.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.210 4.210 3 C 0.002 3.998 4 H 0.123 0.877 5 C -0.140 4.140 6 C -0.154 4.154 7 C 0.039 3.961 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.389 3.611 11 O -0.448 6.448 12 C -0.194 4.194 13 N -0.097 5.097 14 N -0.046 5.046 15 C -0.052 4.052 16 C -0.096 4.096 17 C -0.153 4.153 18 O -0.369 6.369 19 Si 0.716 3.284 20 C -0.247 4.247 21 C -0.162 4.162 22 C -0.140 4.140 23 H 0.255 0.745 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.253 0.747 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.269 0.731 34 H -0.222 1.222 35 H -0.240 1.240 36 H 0.171 0.829 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.024 2.988 1.659 7.811 hybrid contribution -0.617 -0.319 -0.007 0.695 sum 6.407 2.669 1.652 7.134 Atomic orbital electron populations 1.25687 0.96953 1.00251 0.99909 1.23536 0.95151 1.01107 1.01248 1.18429 0.83792 1.00357 0.97175 0.87663 1.21462 0.94411 1.03195 0.94936 1.21760 0.95386 0.97865 1.00346 1.21133 0.77970 1.00561 0.96423 0.91060 1.45829 1.07559 1.10918 1.70676 1.17017 0.84329 0.83803 0.75976 1.90779 1.69185 1.33575 1.51224 1.21775 0.94252 0.91722 1.11691 1.73449 0.90746 1.25789 1.19708 1.45802 1.05199 1.07540 1.46096 1.22605 0.83834 0.93686 1.05119 1.21439 0.96612 0.86092 1.05503 1.24359 0.85010 0.98543 1.07414 1.86354 1.24087 1.39241 1.87251 0.94618 0.85381 0.74663 0.73732 1.21522 0.91279 1.00679 1.11204 1.21870 0.95406 1.02612 0.96273 1.21449 0.94350 0.97976 1.00227 0.74498 0.91922 0.89815 0.89953 0.89053 0.74663 0.88786 0.87780 0.85737 0.86337 0.73072 1.22209 1.24021 0.82882 0.89967 0.93196 0.92261 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.76 19.25 74.32 1.43 0.67 16 2 C -0.21 -1.04 12.56 31.13 0.39 -0.65 16 3 C 0.02 0.02 2.56 -12.60 -0.03 -0.01 16 4 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 5 C -0.10 0.08 5.16 30.60 0.16 0.24 16 6 C -0.12 0.25 5.39 30.60 0.16 0.42 16 7 C 0.14 0.51 2.45 45.00 0.11 0.62 16 8 H 0.07 0.58 7.58 -2.39 -0.02 0.56 16 9 N -0.70 -3.75 5.08 -445.53 -2.26 -6.01 16 10 C 0.60 7.71 7.79 86.75 0.68 8.39 16 11 O -0.57 -11.25 16.59 -3.92 -0.07 -11.32 16 12 C -0.04 -0.43 7.13 42.46 0.30 -0.12 16 13 N -0.26 -2.08 11.67 -48.17 -0.56 -2.64 16 14 N -0.26 -1.09 3.70 -355.94 -1.32 -2.41 16 15 C 0.09 -0.39 10.12 127.77 1.29 0.90 16 16 C 0.03 0.14 6.21 41.40 0.26 0.40 16 17 C -0.04 0.20 2.87 71.24 0.20 0.40 16 18 O -0.56 4.67 10.38 -148.98 -1.55 3.12 16 19 Si 0.81 -2.48 31.31 68.60 2.15 -0.33 16 20 C -0.22 -2.33 9.35 22.41 0.21 -2.12 16 21 C -0.12 -0.43 5.50 30.61 0.17 -0.26 16 22 C -0.10 -0.29 5.16 30.61 0.16 -0.13 16 23 H 0.24 -0.68 7.80 -4.41 -0.03 -0.71 16 24 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 26 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.42 0.52 8.33 -92.71 -0.77 -0.25 16 29 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.12 -1.05 6.77 -2.38 -0.02 -1.06 16 32 H 0.12 -1.19 7.96 -2.39 -0.02 -1.21 16 33 H 0.42 -7.90 8.74 -74.05 -0.65 -8.55 16 34 H -0.29 -1.25 6.94 99.48 0.69 -0.56 16 35 H -0.31 -2.21 7.11 99.48 0.71 -1.50 16 36 H 0.15 1.76 6.91 -2.91 -0.02 1.74 16 37 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 Total: 0.00 -25.35 337.92 1.55 -23.80 By element: Atomic # 1 Polarization: -12.60 SS G_CDS: -0.34 Total: -12.95 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 5.49 Total: 8.73 kcal Atomic # 7 Polarization: -6.92 SS G_CDS: -4.14 Total: -11.06 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -1.61 Total: -8.19 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: 2.15 Total: -0.33 kcal Total: -25.35 1.55 -23.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12865462_13259642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.675 kcal (2) G-P(sol) polarization free energy of solvation -25.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds