Wall clock time and date at job start Tue Mar 9 2021 13:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34227 * 116.99791 * 2 1 4 4 O 1.20823 * 120.00269 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99918 * 179.97438 * 3 2 1 6 6 N 1.46501 * 112.84898 * 35.51305 * 5 3 2 7 7 C 1.34777 * 119.99703 * 66.98962 * 6 5 3 8 8 O 1.21570 * 120.00067 * 354.95451 * 7 6 5 9 9 C 1.47709 * 119.99598 * 174.95061 * 7 6 5 10 10 N 1.31816 * 126.52307 * 0.28658 * 9 7 6 11 11 N 1.28465 * 110.07119 * 180.12932 * 10 9 7 12 12 C 1.46501 * 124.88085 * 179.88499 * 11 10 9 13 13 C 1.35034 * 110.23772 * 359.61857 * 11 10 9 14 14 C 1.50692 * 126.38957 * 180.24580 * 13 11 10 15 15 O 1.42896 * 109.47331 * 330.00826 * 14 13 11 16 16 Si 1.86294 * 109.47508 * 210.00164 * 14 13 11 17 17 C 1.35371 * 107.22676 * 0.23237 * 13 11 10 18 18 C 1.53789 * 113.68969 * 264.24903 * 5 3 2 19 19 C 1.53789 * 87.07735 * 220.00539 * 18 5 3 20 20 H 1.08995 * 113.61117 * 139.98388 * 19 18 5 21 21 O 1.42899 * 113.69006 * 270.87148 * 19 18 5 22 22 C 1.42896 * 114.00004 * 247.53710 * 21 19 18 23 23 C 1.53782 * 113.61539 * 166.71129 * 5 3 2 24 24 H 1.09004 * 109.46960 * 59.99475 * 1 2 3 25 25 H 1.08992 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46940 * 300.00034 * 1 2 3 27 27 H 0.96998 * 119.99730 * 246.99292 * 6 5 3 28 28 H 1.08999 * 109.46988 * 269.69832 * 12 11 10 29 29 H 1.09007 * 109.46853 * 29.69525 * 12 11 10 30 30 H 1.08994 * 109.47379 * 149.69385 * 12 11 10 31 31 H 1.09001 * 109.46711 * 90.00321 * 14 13 11 32 32 H 0.96700 * 114.00283 * 180.02562 * 15 14 13 33 33 H 1.48506 * 109.99761 * 60.00337 * 16 14 13 34 34 H 1.48499 * 110.00320 * 181.32107 * 16 14 13 35 35 H 1.07993 * 127.25235 * 179.97438 * 17 13 11 36 36 H 1.08994 * 113.61501 * 334.54798 * 18 5 3 37 37 H 1.08994 * 113.61251 * 105.45853 * 18 5 3 38 38 H 1.09003 * 109.46906 * 179.97438 * 22 21 19 39 39 H 1.09003 * 109.47206 * 300.00078 * 22 21 19 40 40 H 1.08997 * 109.47078 * 60.00180 * 22 21 19 41 41 H 1.09001 * 113.61173 * 254.61277 * 23 5 3 42 42 H 1.08997 * 113.61531 * 25.51558 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1923 0.2071 -0.7832 7 6 4.0356 0.1730 -2.1214 8 8 3.3012 0.9729 -2.6680 9 6 4.7562 -0.8363 -2.9238 10 7 5.5754 -1.7625 -2.4672 11 7 6.0287 -2.4686 -3.4399 12 6 6.9665 -3.5853 -3.2988 13 6 5.5121 -2.0373 -4.6106 14 6 5.7933 -2.6085 -5.9764 15 8 7.1144 -3.1525 -6.0024 16 14 5.6514 -1.2607 -7.2546 17 6 4.6941 -0.9962 -4.3285 18 6 4.1754 1.4485 1.4020 19 6 5.1715 2.4296 0.7615 20 1 5.3788 3.3051 1.3768 21 8 6.3581 1.8037 0.2694 22 6 7.5416 2.1542 0.9894 23 6 4.1099 2.6765 -0.3234 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.7194 -0.4753 -0.3390 28 1 7.9883 -3.2132 -3.3730 29 1 6.8223 -4.0603 -2.3284 30 1 6.7865 -4.3131 -4.0899 31 1 5.0720 -3.3955 -6.1966 32 1 7.3643 -3.5382 -6.8532 33 1 6.6298 -0.1816 -6.9655 34 1 5.8952 -1.8177 -8.6094 35 1 4.1160 -0.4108 -5.0280 36 1 3.4994 1.9173 2.1169 37 1 4.6425 0.5434 1.7902 38 1 8.3976 1.6380 0.5547 39 1 7.6977 3.2314 0.9296 40 1 7.4322 1.8603 2.0333 41 1 4.5240 2.7627 -1.3279 42 1 3.4158 3.4810 -0.0801 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_14247462_13259642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:32 Heat of formation + Delta-G solvation = -68.272547 kcal Electronic energy + Delta-G solvation = -29184.937032 eV Core-core repulsion = 24942.885683 eV Total energy + Delta-G solvation = -4242.051349 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.82714 -42.45542 -40.65131 -39.70247 -38.05386 -37.73310 -37.02053 -34.64167 -34.00274 -32.68340 -29.52607 -28.54905 -27.74114 -27.10229 -26.88663 -26.27003 -24.36298 -22.71128 -22.16753 -21.00399 -20.48344 -19.22646 -18.66254 -18.48950 -18.22890 -17.65742 -17.45105 -17.32407 -17.25908 -16.90483 -16.11478 -16.02375 -15.83957 -15.60495 -15.37966 -14.89065 -14.77922 -14.62759 -14.35027 -14.01093 -13.73002 -13.67610 -13.44239 -13.38503 -13.34088 -13.01925 -12.99767 -12.56297 -12.41592 -12.16880 -12.07866 -11.88396 -11.85614 -11.66318 -11.33053 -11.02765 -10.64175 -10.37149 -10.08750 -9.86948 -4.89524 0.40515 0.79379 0.90908 1.26799 1.50337 1.60858 1.64622 1.89362 1.98129 2.26580 2.60232 2.98751 3.14258 3.19775 3.26614 3.48997 3.53856 3.67643 3.99421 4.18728 4.22644 4.25102 4.30316 4.38977 4.40612 4.42065 4.48345 4.52246 4.55553 4.58021 4.62678 4.65919 4.68164 4.72039 4.75761 4.83668 4.89864 5.18212 5.24184 5.25738 5.68448 6.21846 6.26035 6.51185 6.56094 6.80105 7.01948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.525 6.525 5 C 0.151 3.849 6 N -0.670 5.670 7 C 0.613 3.387 8 O -0.559 6.559 9 C -0.036 4.036 10 N -0.261 5.261 11 N -0.262 5.262 12 C 0.088 3.912 13 C 0.026 3.974 14 C -0.044 4.044 15 O -0.553 6.553 16 Si 0.768 3.232 17 C -0.192 4.192 18 C -0.129 4.129 19 C 0.075 3.925 20 H 0.115 0.885 21 O -0.383 6.383 22 C 0.025 3.975 23 C -0.129 4.129 24 H 0.053 0.947 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.422 0.578 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.406 0.594 33 H -0.313 1.313 34 H -0.263 1.263 35 H 0.181 0.819 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 -6.074 1.159 6.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.413 6.413 5 C 0.062 3.938 6 N -0.323 5.323 7 C 0.399 3.601 8 O -0.436 6.436 9 C -0.194 4.194 10 N -0.099 5.099 11 N -0.052 5.052 12 C -0.051 4.051 13 C -0.099 4.099 14 C -0.154 4.154 15 O -0.364 6.364 16 Si 0.672 3.328 17 C -0.220 4.220 18 C -0.166 4.166 19 C 0.016 3.984 20 H 0.132 0.868 21 O -0.302 6.302 22 C -0.071 4.071 23 C -0.167 4.167 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.088 0.912 27 H 0.261 0.739 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.259 0.741 33 H -0.241 1.241 34 H -0.188 1.188 35 H 0.199 0.801 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.401 -5.234 1.599 6.444 hybrid contribution 0.466 -0.462 -0.718 0.973 sum 3.868 -5.696 0.880 6.941 Atomic orbital electron populations 1.23539 0.74991 1.05598 1.02457 1.86526 1.24854 1.32931 1.83236 1.24161 0.92093 0.81450 0.71039 1.90639 1.67011 1.37202 1.46470 1.21358 0.83610 0.91172 0.97660 1.45139 1.52731 1.28961 1.05508 1.17029 0.79528 0.81918 0.81656 1.90805 1.39001 1.41601 1.72146 1.21578 1.03753 0.99990 0.94060 1.73469 1.12660 1.05906 1.17867 1.45687 1.32216 1.24553 1.02698 1.22491 0.91101 0.85339 1.06160 1.21154 1.00428 0.98879 0.89417 1.24378 0.87712 1.07068 0.96279 1.86461 1.30117 1.79134 1.40694 0.93419 0.89699 0.75531 0.74170 1.21610 1.05209 1.00291 0.94884 1.23848 0.98131 1.02976 0.91665 1.22987 0.84863 0.95931 0.94571 0.86754 1.87935 1.15592 1.69418 1.57224 1.22993 0.86490 1.00604 0.96986 1.23609 0.97660 0.94193 1.01227 0.92807 0.85305 0.91152 0.73908 0.89311 0.87828 0.86354 0.86356 0.74116 1.24058 1.18799 0.80146 0.85230 0.86915 0.89363 0.93118 0.92161 0.91119 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.56 113.37 1.20 1.30 16 2 O -0.36 -3.40 10.41 -51.39 -0.54 -3.93 16 3 C 0.47 5.27 6.42 71.24 0.46 5.72 16 4 O -0.53 -8.26 15.66 21.97 0.34 -7.91 16 5 C 0.15 0.97 1.00 3.39 0.00 0.97 16 6 N -0.67 -4.93 4.53 -426.87 -1.93 -6.86 16 7 C 0.61 7.72 7.30 86.75 0.63 8.35 16 8 O -0.56 -10.38 15.65 -3.94 -0.06 -10.44 16 9 C -0.04 -0.37 7.13 42.46 0.30 -0.07 16 10 N -0.26 -2.06 11.68 -48.17 -0.56 -2.62 16 11 N -0.26 -1.08 3.70 -355.93 -1.32 -2.39 16 12 C 0.09 -0.30 10.12 127.77 1.29 0.99 16 13 C 0.03 0.09 6.21 41.40 0.26 0.34 16 14 C -0.04 0.17 2.86 71.23 0.20 0.38 16 15 O -0.55 2.75 10.38 -148.98 -1.55 1.21 16 16 Si 0.77 -1.93 31.23 68.60 2.14 0.22 16 17 C -0.19 -1.31 9.35 22.41 0.21 -1.10 16 18 C -0.13 0.21 7.20 31.13 0.22 0.43 16 19 C 0.07 0.00 4.37 31.12 0.14 0.14 16 20 H 0.11 -0.55 7.87 -2.39 -0.02 -0.57 16 21 O -0.38 -1.07 10.14 -148.98 -1.51 -2.58 16 22 C 0.03 -0.07 10.85 113.37 1.23 1.16 16 23 C -0.13 -0.81 6.67 31.12 0.21 -0.60 16 24 H 0.05 0.33 8.13 -2.38 -0.02 0.32 16 25 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.07 0.17 8.13 -2.39 -0.02 0.16 16 27 H 0.42 1.74 8.40 -92.71 -0.78 0.96 16 28 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.10 -0.61 8.14 -2.38 -0.02 -0.63 16 30 H 0.12 -0.80 6.77 -2.39 -0.02 -0.82 16 31 H 0.12 -1.11 7.96 -2.39 -0.02 -1.13 16 32 H 0.41 -5.36 8.74 -74.06 -0.65 -6.01 16 33 H -0.31 -2.50 7.11 99.48 0.71 -1.79 16 34 H -0.26 0.25 7.11 99.48 0.71 0.96 16 35 H 0.18 0.59 7.02 -2.91 -0.02 0.57 16 36 H 0.13 -0.59 8.10 -2.39 -0.02 -0.61 16 37 H 0.11 -0.52 8.09 -2.39 -0.02 -0.54 16 38 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.07 0.81 7.41 -2.39 -0.02 0.79 16 42 H 0.12 0.71 7.35 -2.39 -0.02 0.70 16 Total: 0.00 -27.55 360.47 1.06 -26.49 By element: Atomic # 1 Polarization: -8.86 SS G_CDS: -0.32 Total: -9.18 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.36 Total: 18.01 kcal Atomic # 7 Polarization: -8.06 SS G_CDS: -3.81 Total: -11.87 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -3.31 Total: -23.66 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.14 Total: 0.22 kcal Total: -27.55 1.06 -26.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_14247462_13259642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.787 kcal (2) G-P(sol) polarization free energy of solvation -27.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds