Wall clock time and date at job start Tue Mar 9 2021 13:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00127 * 2 1 4 4 O 1.20821 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00072 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47319 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47265 * 179.97438 * 6 5 3 8 8 H 1.09002 * 112.84949 * 45.33448 * 7 6 5 9 9 C 1.53781 * 113.61707 * 176.53008 * 7 6 5 10 10 C 1.53777 * 87.08336 * 140.06298 * 9 7 6 11 11 H 1.09008 * 113.61204 * 89.11878 * 10 9 7 12 12 N 1.46492 * 113.61596 * 219.93501 * 10 9 7 13 13 C 1.34774 * 120.00245 * 205.00267 * 12 10 9 14 14 O 1.21574 * 119.99837 * 0.02562 * 13 12 10 15 15 C 1.47710 * 120.00587 * 180.02562 * 13 12 10 16 16 N 1.31811 * 126.51243 * 0.02562 * 15 13 12 17 17 N 1.28469 * 110.07119 * 179.97438 * 16 15 13 18 18 C 1.46504 * 124.88346 * 180.02562 * 17 16 15 19 19 C 1.35038 * 110.23421 * 0.02562 * 17 16 15 20 20 C 1.50697 * 126.38964 * 180.02562 * 19 17 16 21 21 O 1.42900 * 109.46663 * 329.99316 * 20 19 17 22 22 Si 1.86303 * 109.46996 * 209.99918 * 20 19 17 23 23 C 1.35371 * 107.22549 * 359.76267 * 19 17 16 24 24 C 1.53775 * 87.07992 * 334.56762 * 10 9 7 25 25 H 1.08995 * 109.46862 * 300.00145 * 1 2 3 26 26 H 1.08995 * 109.46680 * 60.00091 * 1 2 3 27 27 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47286 * 59.99313 * 5 3 2 29 29 H 1.09005 * 109.46877 * 300.00112 * 5 3 2 30 30 H 1.09001 * 109.46833 * 59.99982 * 6 5 3 31 31 H 1.08992 * 109.47090 * 300.00055 * 6 5 3 32 32 H 1.08997 * 113.61673 * 254.61847 * 9 7 6 33 33 H 1.09009 * 113.61202 * 25.43077 * 9 7 6 34 34 H 0.97005 * 120.00166 * 24.99923 * 12 10 9 35 35 H 1.08993 * 109.46932 * 90.02716 * 18 17 16 36 36 H 1.09009 * 109.46532 * 210.02351 * 18 17 16 37 37 H 1.08995 * 109.47297 * 330.01923 * 18 17 16 38 38 H 1.08990 * 109.47544 * 89.99492 * 20 19 17 39 39 H 0.96703 * 114.00459 * 300.00210 * 21 20 19 40 40 H 1.48500 * 110.00029 * 58.67689 * 22 20 19 41 41 H 1.48501 * 109.99956 * 179.97438 * 22 20 19 42 42 H 1.07998 * 127.25200 * 180.24278 * 23 19 17 43 43 H 1.08993 * 113.61636 * 270.87622 * 24 10 9 44 44 H 1.09008 * 113.61006 * 139.97865 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0003 2.7419 -0.0011 7 6 5.5282 2.8220 -0.0011 8 1 5.9878 2.1387 -0.7152 9 6 6.0698 4.2587 -0.0868 10 6 7.1412 3.8318 0.9304 11 1 8.0419 3.4245 0.4708 12 7 7.4298 4.8516 1.9416 13 6 8.6268 4.8670 2.5607 14 8 9.4673 4.0349 2.2794 15 6 8.9177 5.8949 3.5808 16 7 8.1058 6.8521 3.9834 17 7 8.6799 7.5681 4.8824 18 6 8.0698 8.7191 5.5527 19 6 9.9266 7.1071 5.1208 20 6 10.9167 7.6747 6.1049 21 8 10.6988 9.0802 6.2427 22 14 12.6484 7.3723 5.4879 23 6 10.1189 6.0363 4.3152 24 6 6.1503 2.7552 1.4037 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.9558 0.7808 -0.8907 29 1 3.9564 0.7805 0.8892 30 1 3.6108 3.2363 0.8889 31 1 3.6102 3.2358 -0.8910 32 1 6.4746 4.5150 -1.0658 33 1 5.3780 5.0097 0.2949 34 1 6.7593 5.5158 2.1657 35 1 7.5495 8.3834 6.4496 36 1 8.8465 9.4325 5.8286 37 1 7.3598 9.1979 4.8784 38 1 10.7859 7.1901 7.0724 39 1 10.7989 9.5765 5.4188 40 1 12.8296 8.0011 4.1548 41 1 13.6344 7.9280 6.4493 42 1 11.0035 5.4206 4.2463 43 1 5.4813 3.0949 2.1942 44 1 6.6204 1.7976 1.6279 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_14475074_13259642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:29:00 Heat of formation + Delta-G solvation = -50.110331 kcal Electronic energy + Delta-G solvation = -26646.062979 eV Core-core repulsion = 22567.943776 eV Total energy + Delta-G solvation = -4078.119203 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.84885 -41.56836 -41.00763 -39.41060 -38.25149 -37.62935 -35.21077 -34.40601 -33.32909 -32.50401 -29.21382 -28.59934 -27.09098 -26.68166 -26.44058 -24.62875 -22.76467 -22.19461 -21.48658 -21.21709 -20.42172 -19.10951 -18.61555 -17.68793 -17.62542 -17.59213 -17.49479 -17.22879 -17.00650 -16.27540 -16.09720 -15.83848 -15.74171 -15.26422 -15.22622 -14.84641 -14.54852 -14.15349 -14.11162 -13.80814 -13.68458 -13.42713 -13.38728 -13.30616 -13.02494 -12.70286 -12.63631 -12.31699 -12.23404 -12.00153 -11.91260 -11.81819 -11.69421 -11.39437 -11.23982 -11.10672 -11.01377 -10.28751 -9.97632 -9.95334 -4.88861 0.43297 0.81582 1.15792 1.21316 1.55148 1.68054 1.78105 1.94522 2.17299 2.29722 3.02471 3.33035 3.33948 3.53405 3.55747 3.74645 3.86767 3.88126 4.01779 4.18117 4.25455 4.26663 4.29967 4.31249 4.33636 4.43050 4.48433 4.55915 4.64525 4.66111 4.70325 4.70812 4.73716 4.80597 4.89606 4.95693 5.09177 5.12196 5.24187 5.26826 5.36072 5.43651 5.62061 5.68191 6.23660 6.40272 6.69669 6.81325 7.12517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.455 3.545 4 O -0.546 6.546 5 C -0.109 4.109 6 C -0.091 4.091 7 C -0.094 4.094 8 H 0.114 0.886 9 C -0.135 4.135 10 C 0.112 3.888 11 H 0.106 0.894 12 N -0.699 5.699 13 C 0.603 3.397 14 O -0.565 6.565 15 C -0.042 4.042 16 N -0.268 5.268 17 N -0.265 5.265 18 C 0.064 3.936 19 C -0.014 4.014 20 C -0.045 4.045 21 O -0.536 6.536 22 Si 0.786 3.214 23 C -0.186 4.186 24 C -0.145 4.145 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.413 0.587 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.390 0.610 40 H -0.294 1.294 41 H -0.283 1.283 42 H 0.183 0.817 43 H 0.085 0.915 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 0.026 1.431 1.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.436 6.436 5 C -0.146 4.146 6 C -0.129 4.129 7 C -0.113 4.113 8 H 0.132 0.868 9 C -0.173 4.173 10 C 0.008 3.992 11 H 0.124 0.876 12 N -0.349 5.349 13 C 0.389 3.611 14 O -0.443 6.443 15 C -0.200 4.200 16 N -0.106 5.106 17 N -0.054 5.054 18 C -0.075 4.075 19 C -0.140 4.140 20 C -0.155 4.155 21 O -0.344 6.344 22 Si 0.688 3.312 23 C -0.214 4.214 24 C -0.184 4.184 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.249 0.751 35 H 0.111 0.889 36 H 0.149 0.851 37 H 0.120 0.880 38 H 0.163 0.837 39 H 0.240 0.760 40 H -0.220 1.220 41 H -0.209 1.209 42 H 0.200 0.800 43 H 0.103 0.897 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.477 0.461 1.477 1.619 hybrid contribution -0.595 1.189 -0.091 1.333 sum -1.072 1.650 1.386 2.407 Atomic orbital electron populations 1.23487 0.75273 1.05495 1.02301 1.86518 1.24665 1.33541 1.83743 1.24613 0.93628 0.80794 0.70903 1.90670 1.68414 1.37461 1.47051 1.21559 0.84776 1.00404 1.07900 1.21314 0.94628 0.93890 1.03075 1.22316 0.93975 0.97431 0.97576 0.86788 1.23381 0.96828 0.97643 0.99430 1.22692 0.97950 0.89328 0.89272 0.87615 1.45845 1.15400 1.33460 1.40188 1.17082 0.82224 0.82194 0.79615 1.90776 1.47872 1.40161 1.65459 1.21883 0.95088 0.99282 1.03719 1.73466 1.25055 1.05568 1.06502 1.45705 1.09751 1.23289 1.26657 1.22880 1.01870 0.84708 0.98000 1.22163 0.89083 0.99238 1.03469 1.24886 1.05809 0.82709 1.02084 1.86555 1.91455 1.17467 1.38954 0.93159 0.71148 0.91101 0.75746 1.21731 1.00494 1.00369 0.98786 1.23557 0.97892 0.99394 0.97553 0.92243 0.92138 0.85427 0.85256 0.85856 0.91923 0.91385 0.89881 0.89051 0.75073 0.88893 0.85145 0.87989 0.83725 0.75962 1.22049 1.20918 0.79991 0.89680 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.13 10.57 -51.39 -0.54 -1.67 16 3 C 0.46 1.69 7.96 71.24 0.57 2.26 16 4 O -0.55 -5.76 15.73 21.98 0.35 -5.41 16 5 C -0.11 0.44 5.81 29.85 0.17 0.61 16 6 C -0.09 0.26 4.33 30.59 0.13 0.40 16 7 C -0.09 0.47 3.64 -10.27 -0.04 0.44 16 8 H 0.11 -0.85 8.14 -2.39 -0.02 -0.87 16 9 C -0.13 0.47 7.39 31.12 0.23 0.70 16 10 C 0.11 0.05 4.24 45.52 0.19 0.24 16 11 H 0.11 0.36 7.46 -2.38 -0.02 0.34 16 12 N -0.70 -2.23 5.35 -443.05 -2.37 -4.60 16 13 C 0.60 5.35 7.82 86.75 0.68 6.02 16 14 O -0.57 -8.28 16.52 -3.95 -0.07 -8.35 16 15 C -0.04 -0.30 7.13 42.46 0.30 0.00 16 16 N -0.27 -1.39 11.67 -48.17 -0.56 -1.95 16 17 N -0.26 -0.30 3.70 -355.92 -1.32 -1.62 16 18 C 0.06 -0.37 11.00 127.77 1.41 1.04 16 19 C -0.01 0.00 6.17 41.40 0.26 0.25 16 20 C -0.04 0.20 2.99 71.23 0.21 0.41 16 21 O -0.54 2.57 10.02 -148.98 -1.49 1.07 16 22 Si 0.79 -2.99 31.25 68.60 2.14 -0.84 16 23 C -0.19 -0.67 9.35 22.41 0.21 -0.46 16 24 C -0.15 0.34 7.43 31.12 0.23 0.57 16 25 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 26 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 27 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 28 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 29 H 0.12 -0.85 8.14 -2.38 -0.02 -0.87 16 30 H 0.06 -0.01 7.84 -2.39 -0.02 -0.03 16 31 H 0.07 -0.06 8.10 -2.39 -0.02 -0.08 16 32 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.09 -0.35 8.08 -2.38 -0.02 -0.36 16 34 H 0.41 0.23 8.46 -92.70 -0.78 -0.55 16 35 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.13 -1.12 5.00 -2.38 -0.01 -1.13 16 37 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.15 -1.04 7.96 -2.39 -0.02 -1.06 16 39 H 0.39 -3.71 8.39 -74.06 -0.62 -4.33 16 40 H -0.29 -0.78 7.11 99.48 0.71 -0.08 16 41 H -0.28 -0.53 7.11 99.48 0.71 0.18 16 42 H 0.18 0.01 7.04 -2.91 -0.02 -0.01 16 43 H 0.08 -0.15 7.92 -2.39 -0.02 -0.16 16 44 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 Total: 0.00 -24.08 372.49 1.56 -22.52 By element: Atomic # 1 Polarization: -12.49 SS G_CDS: -0.33 Total: -12.82 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 5.75 Total: 13.68 kcal Atomic # 7 Polarization: -3.92 SS G_CDS: -4.25 Total: -8.17 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.76 Total: -14.36 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.14 Total: -0.84 kcal Total: -24.08 1.56 -22.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_14475074_13259642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.591 kcal (2) G-P(sol) polarization free energy of solvation -24.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds