Wall clock time and date at job start Tue Mar 9 2021 14:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86302 * 109.46891 * 2 1 4 4 H 1.48501 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46889 * 299.99124 * 3 2 1 6 6 H 1.48494 * 109.47426 * 59.99519 * 3 2 1 7 7 C 1.50707 * 109.46602 * 119.99229 * 2 1 3 8 8 C 1.38241 * 119.94229 * 65.00509 * 7 2 1 9 9 C 1.38168 * 120.05319 * 179.97438 * 8 7 2 10 10 N 1.48005 * 120.02691 * 180.02562 * 9 8 7 11 11 O 1.21807 * 119.99790 * 359.97438 * 10 9 8 12 12 O 1.21794 * 120.00130 * 179.97438 * 10 9 8 13 13 C 1.38702 * 119.94703 * 0.02588 * 9 8 7 14 14 O 1.35904 * 120.05799 * 179.97438 * 13 9 8 15 15 C 1.42896 * 117.00080 * 180.02562 * 14 13 9 16 16 C 1.50696 * 109.47216 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00109 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99873 * 179.97438 * 18 16 15 20 20 C 1.52567 * 108.90761 * 276.37197 * 19 18 16 21 21 C 1.54429 * 109.15848 * 161.40118 * 20 19 18 22 22 Si 1.85199 * 106.99999 * 56.84691 * 21 20 19 23 23 C 1.87760 * 111.38491 * 81.15062 * 22 21 20 24 24 C 1.56394 * 98.96451 * 98.19806 * 23 22 21 25 25 C 1.53769 * 109.79161 * 39.36997 * 24 23 22 26 26 C 1.55692 * 111.39595 * 312.19661 * 25 24 23 27 27 C 1.85204 * 110.01617 * 317.14413 * 22 21 20 28 28 C 1.52569 * 108.90243 * 153.63308 * 19 18 16 29 29 C 1.38761 * 119.88783 * 0.24811 * 13 9 8 30 30 C 1.38115 * 119.94155 * 359.47693 * 29 13 9 31 31 H 0.96705 * 113.99657 * 60.00571 * 1 2 3 32 32 H 1.08989 * 109.47381 * 239.99677 * 2 1 3 33 33 H 1.07997 * 119.97138 * 0.02562 * 8 7 2 34 34 H 1.09004 * 109.47251 * 59.99775 * 15 14 13 35 35 H 1.09000 * 109.47075 * 299.99668 * 15 14 13 36 36 H 0.96995 * 120.00018 * 0.27749 * 18 16 15 37 37 H 1.08998 * 108.88319 * 35.00653 * 19 18 16 38 38 H 1.09000 * 109.51694 * 281.40125 * 20 19 18 39 39 H 1.09002 * 109.51493 * 41.57266 * 20 19 18 40 40 H 1.09004 * 110.00943 * 297.44823 * 21 20 19 41 41 H 1.09003 * 109.98980 * 176.22606 * 21 20 19 42 42 H 1.09001 * 111.49976 * 215.64310 * 23 22 21 43 43 H 1.09007 * 111.49515 * 340.75550 * 23 22 21 44 44 H 1.08997 * 109.41756 * 279.27149 * 24 23 22 45 45 H 1.09002 * 109.41911 * 159.46837 * 24 23 22 46 46 H 1.09003 * 109.10597 * 191.68419 * 25 24 23 47 47 H 1.09000 * 109.10482 * 72.70615 * 25 24 23 48 48 H 1.08996 * 111.14130 * 270.09107 * 26 25 24 49 49 H 1.08990 * 111.18381 * 145.88190 * 26 25 24 50 50 H 1.09004 * 109.93891 * 283.40845 * 27 22 21 51 51 H 1.09006 * 110.00224 * 162.22512 * 27 22 21 52 52 H 1.09004 * 109.51867 * 318.43033 * 28 19 18 53 53 H 1.08996 * 109.51778 * 78.53991 * 28 19 18 54 54 H 1.08000 * 120.02684 * 179.72586 * 29 13 9 55 55 H 1.08001 * 119.97619 * 180.27917 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 3.5349 1.7566 0.0006 5 1 1.5550 2.4564 -1.2126 6 1 1.5548 2.4566 1.2124 7 6 1.9312 -0.7103 1.2306 8 6 1.6839 -2.0601 1.3975 9 6 2.1437 -2.7137 2.5246 10 7 1.8791 -4.1591 2.7023 11 8 1.2554 -4.7727 1.8549 12 8 2.2851 -4.7348 3.6958 13 6 2.8535 -2.0143 3.4894 14 8 3.3064 -2.6548 4.5992 15 6 4.0293 -1.8714 5.5508 16 6 4.4481 -2.7443 6.7056 17 8 4.1557 -3.9214 6.7133 18 7 5.1474 -2.2170 7.7300 19 6 5.5540 -3.0656 8.8529 20 6 4.3950 -3.1684 9.8398 21 6 4.6165 -4.3917 10.7559 22 14 6.2629 -4.1651 11.5733 23 6 6.1416 -3.0102 13.0487 24 6 6.0538 -4.0783 14.1877 25 6 7.0027 -5.2482 13.8786 26 6 6.8384 -5.7402 12.4107 27 6 7.5043 -3.5575 10.3405 28 6 6.8066 -2.4734 9.4917 29 6 3.0955 -0.6582 3.3223 30 6 2.6386 -0.0107 2.1911 31 1 -0.3933 0.4417 -0.7652 32 1 1.7923 -0.5138 -0.8898 33 1 1.1316 -2.6044 0.6457 34 1 3.3927 -1.0658 5.9168 35 1 4.9141 -1.4479 5.0755 36 1 5.3777 -1.2748 7.7258 37 1 5.7867 -4.0616 8.4763 38 1 4.3498 -2.2624 10.4441 39 1 3.4602 -3.2891 9.2923 40 1 4.6186 -5.3063 10.1629 41 1 3.8308 -4.4398 11.5099 42 1 7.0347 -2.3932 13.1475 43 1 5.2403 -2.3987 13.0042 44 1 5.0315 -4.4498 14.2581 45 1 6.3384 -3.6215 15.1356 46 1 6.7855 -6.0727 14.5577 47 1 8.0317 -4.9232 14.0329 48 1 6.0820 -6.5218 12.3404 49 1 7.7896 -6.0788 12.0000 50 1 7.8267 -4.3796 9.7015 51 1 8.3636 -3.1293 10.8568 52 1 7.4854 -2.1291 8.7113 53 1 6.5285 -1.6339 10.1287 54 1 3.6441 -0.1105 4.0743 55 1 2.8305 1.0438 2.0584 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739290_4549638.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:48 Heat of formation + Delta-G solvation = -119.125321 kcal Electronic energy + Delta-G solvation = -36495.282637 eV Core-core repulsion = 31624.255436 eV Total energy + Delta-G solvation = -4871.027201 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 408.177 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.30610 -41.80181 -40.88420 -39.47079 -37.85908 -37.59476 -37.34403 -36.14259 -34.13109 -33.49832 -32.35031 -32.05705 -30.02683 -29.67572 -27.83698 -26.91189 -26.25323 -24.71615 -24.05437 -23.59860 -22.74930 -21.71784 -21.57933 -20.87398 -20.45521 -19.79735 -19.17572 -18.68941 -18.56347 -18.33717 -17.59210 -17.45737 -17.09816 -16.47822 -16.18420 -15.95490 -15.92506 -15.73324 -15.68721 -15.55658 -15.20284 -14.96106 -14.61755 -14.36738 -14.18524 -13.99030 -13.76739 -13.64449 -13.36909 -13.22815 -13.16703 -13.06905 -12.82083 -12.71199 -12.66834 -12.40517 -12.34221 -12.27666 -12.19273 -12.15096 -12.11200 -11.97838 -11.93384 -11.80949 -11.70918 -11.35355 -11.01465 -10.85841 -10.40089 -10.36913 -10.30303 -10.17799 -10.05962 -9.78938 -1.32507 -0.25841 0.13883 0.33314 1.13767 1.21524 1.47086 1.48510 1.56522 1.79897 1.91602 1.93229 1.97822 2.00184 2.34135 2.68134 3.07252 3.20514 3.32468 3.58673 3.59215 3.66598 3.76909 3.87260 3.96029 3.97166 4.09271 4.13429 4.15552 4.20763 4.22815 4.33125 4.33331 4.41556 4.49919 4.51093 4.59223 4.65471 4.66458 4.71328 4.81646 4.82161 4.86072 5.05661 5.11222 5.13292 5.15989 5.17918 5.21569 5.25442 5.28092 5.36174 5.37899 5.46294 5.50473 5.54407 5.60438 5.73725 6.42629 6.48582 6.77619 7.19058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.091 4.091 3 Si 0.982 3.018 4 H -0.241 1.241 5 H -0.258 1.258 6 H -0.252 1.252 7 C -0.114 4.114 8 C 0.001 3.999 9 C -0.104 4.104 10 N 0.035 4.965 11 O -0.194 6.194 12 O -0.177 6.177 13 C 0.192 3.808 14 O -0.290 6.290 15 C 0.023 3.977 16 C 0.505 3.495 17 O -0.564 6.564 18 N -0.705 5.705 19 C 0.134 3.866 20 C -0.117 4.117 21 C -0.427 4.427 22 Si 1.054 2.946 23 C -0.404 4.404 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.431 4.431 27 C -0.410 4.410 28 C -0.111 4.111 29 C -0.189 4.189 30 C -0.021 4.021 31 H 0.402 0.598 32 H 0.099 0.901 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.423 0.577 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.099 0.901 52 H 0.083 0.917 53 H 0.098 0.902 54 H 0.205 0.795 55 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 15.352 -0.156 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.199 4.199 3 Si 0.803 3.197 4 H -0.165 1.165 5 H -0.182 1.182 6 H -0.176 1.176 7 C -0.115 4.115 8 C -0.018 4.018 9 C -0.189 4.189 10 N 0.545 4.455 11 O -0.404 6.404 12 O -0.390 6.390 13 C 0.142 3.858 14 O -0.200 6.200 15 C -0.054 4.054 16 C 0.291 3.709 17 O -0.442 6.442 18 N -0.360 5.360 19 C 0.029 3.971 20 C -0.155 4.155 21 C -0.511 4.511 22 Si 1.245 2.755 23 C -0.491 4.491 24 C -0.166 4.166 25 C -0.160 4.160 26 C -0.515 4.515 27 C -0.497 4.497 28 C -0.149 4.149 29 C -0.208 4.208 30 C -0.038 4.038 31 H 0.253 0.747 32 H 0.116 0.884 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.118 0.882 52 H 0.102 0.898 53 H 0.116 0.884 54 H 0.221 0.779 55 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.056 15.453 0.341 16.600 hybrid contribution -0.774 -1.297 -0.378 1.557 sum 5.282 14.156 -0.037 15.109 Atomic orbital electron populations 1.86464 1.17355 1.82524 1.51269 1.24976 0.85958 1.12046 0.96932 0.85243 0.80421 0.72843 0.81215 1.16467 1.18238 1.17595 1.19522 1.01624 0.91798 0.98584 1.20880 0.92733 0.94952 0.93270 1.20859 1.15688 0.79922 1.02425 1.43848 0.97967 1.04135 0.99524 1.94490 1.39886 1.67821 1.38172 1.94685 1.53984 1.70776 1.19511 1.18931 0.89804 0.92042 0.84977 1.86475 1.67474 1.37829 1.28237 1.23146 1.00090 0.93866 0.88300 1.20503 0.78348 0.88081 0.83988 1.90847 1.55011 1.18819 1.79499 1.45804 1.55947 1.14510 1.19731 1.21155 0.94775 0.95131 0.86005 1.21705 0.97394 0.99231 0.97177 1.26468 1.19340 0.99793 1.05519 0.78820 0.64795 0.66228 0.65690 1.26698 1.05213 1.04872 1.12270 1.22074 0.99588 0.95286 0.99650 1.21883 1.00237 0.97565 0.96338 1.26751 1.06030 1.15097 1.03619 1.26161 1.10280 1.03411 1.09893 1.21586 0.94097 0.98961 1.00223 1.21729 1.06574 0.90125 1.02332 1.21690 0.90325 1.01490 0.90322 0.74683 0.88362 0.82376 0.84106 0.83817 0.73913 0.91873 0.88950 0.94192 0.92090 0.90363 0.89283 0.89728 0.92137 0.91720 0.92880 0.91537 0.91425 0.90203 0.90740 0.88224 0.89812 0.88388 0.77861 0.80880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.22 12.81 -148.98 -1.91 0.32 16 2 C -0.09 0.60 2.79 71.24 0.20 0.79 16 3 Si 0.98 -9.08 25.13 68.60 1.72 -7.36 16 4 H -0.24 2.37 7.11 99.48 0.71 3.07 16 5 H -0.26 1.93 7.11 99.48 0.71 2.64 16 6 H -0.25 2.00 7.04 99.48 0.70 2.70 16 7 C -0.11 0.29 5.38 -19.85 -0.11 0.19 16 8 C 0.00 0.00 9.19 22.25 0.20 0.21 16 9 C -0.10 -0.92 6.86 36.47 0.25 -0.67 16 10 N 0.03 0.62 4.45 -46.25 -0.21 0.41 16 11 O -0.19 -3.71 18.45 18.88 0.35 -3.36 16 12 O -0.18 -4.07 17.24 25.62 0.44 -3.63 16 13 C 0.19 0.58 6.67 22.51 0.15 0.73 16 14 O -0.29 -1.87 7.68 -63.45 -0.49 -2.36 16 15 C 0.02 -0.13 5.22 71.23 0.37 0.25 16 16 C 0.51 1.31 7.68 87.66 0.67 1.98 16 17 O -0.56 -9.28 16.15 16.00 0.26 -9.02 16 18 N -0.71 3.68 5.02 -443.89 -2.23 1.45 16 19 C 0.13 -0.27 1.98 44.70 0.09 -0.18 16 20 C -0.12 0.05 5.24 30.94 0.16 0.22 16 21 C -0.43 -0.16 4.96 72.47 0.36 0.20 16 22 Si 1.05 -5.14 10.56 68.60 0.72 -4.41 16 23 C -0.40 1.91 5.94 73.16 0.43 2.34 16 24 C -0.13 0.16 5.97 32.04 0.19 0.36 16 25 C -0.12 0.01 6.10 31.78 0.19 0.20 16 26 C -0.43 0.18 5.84 72.91 0.43 0.61 16 27 C -0.41 2.58 4.95 72.44 0.36 2.93 16 28 C -0.11 0.89 5.12 30.91 0.16 1.05 16 29 C -0.19 1.40 9.04 22.37 0.20 1.60 16 30 C -0.02 0.15 8.66 22.25 0.19 0.34 16 31 H 0.40 -5.07 8.74 -74.05 -0.65 -5.71 16 32 H 0.10 -0.96 7.96 -2.39 -0.02 -0.98 16 33 H 0.16 0.60 7.61 -2.91 -0.02 0.57 16 34 H 0.14 -1.95 7.65 -2.38 -0.02 -1.97 16 35 H 0.14 -2.07 7.67 -2.39 -0.02 -2.09 16 36 H 0.42 -6.11 8.60 -92.71 -0.80 -6.91 16 37 H 0.06 0.29 7.24 -2.39 -0.02 0.27 16 38 H 0.09 -0.54 7.75 -2.39 -0.02 -0.55 16 39 H 0.04 0.23 7.94 -2.39 -0.02 0.21 16 40 H 0.06 0.27 7.97 -2.38 -0.02 0.25 16 41 H 0.08 0.03 7.97 -2.39 -0.02 0.01 16 42 H 0.09 -0.56 8.04 -2.39 -0.02 -0.58 16 43 H 0.08 -0.47 8.04 -2.38 -0.02 -0.49 16 44 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.07 0.10 8.03 -2.39 -0.02 0.08 16 49 H 0.08 -0.07 8.03 -2.39 -0.02 -0.09 16 50 H 0.07 -0.31 7.97 -2.39 -0.02 -0.33 16 51 H 0.10 -0.84 7.97 -2.38 -0.02 -0.86 16 52 H 0.08 -0.79 8.13 -2.39 -0.02 -0.81 16 53 H 0.10 -1.21 7.76 -2.39 -0.02 -1.23 16 54 H 0.20 -3.58 6.30 -2.91 -0.02 -3.60 16 55 H 0.17 -2.31 4.86 -2.91 -0.01 -2.33 16 Total: 0.00 -37.18 441.15 3.41 -33.77 By element: Atomic # 1 Polarization: -19.18 SS G_CDS: 0.24 Total: -18.95 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 4.51 Total: 13.14 kcal Atomic # 7 Polarization: 4.30 SS G_CDS: -2.43 Total: 1.87 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.35 Total: -18.06 kcal Atomic # 14 Polarization: -14.22 SS G_CDS: 2.45 Total: -11.77 kcal Total: -37.18 3.41 -33.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739290_4549638.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.360 kcal (2) G-P(sol) polarization free energy of solvation -37.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds